BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318480
Length=942
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17170.1 | Symbols: RFC3 | Translation elongation factor EF... 1415 0.0
> AT3G17170.1 | Symbols: RFC3 | Translation elongation factor
EF1B/ribosomal protein S6 family protein | chr3:5853059-5854906
REVERSE LENGTH=1125
Length=1125
Score = 1415 bits (766), Expect = 0.0
Identities = 891/950 (94%), Gaps = 13/950 (1%)
Strand=Plus/Plus
Query 1 ATGGAGTCACTCCTGCACGCGTCTTCGTCTCTGGTGTCTCTCAGACCCAGAATTGATGGT 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||
Sbjct 54 ATGGAGTCACTCCTGCACGCGTCTTCGTCTCTGGTGTCTCTGAGACCCAGAATCGACGGT 113
Query 61 CGAGATTCGTTCATCAACCCGTCGCGCGTGTGTCTTAATCCTAGTATCGGCCGCAGAGGA 120
|||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||
Sbjct 114 AGAGATTCGTTCATCAACCCGTCACGCGTGTGCCTTAATCCTAGTCTCGGCCGCAGAGGA 173
Query 121 TCTAAACCTCTTCCATTAGTTGCGGCGGCGAAGAAGAAGAAAAGCAAGAAAGATGACAAT 180
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 174 TCTAAACCTCTTCCGTTGGTCGCGGCGGCGAAGAAGAAGAAAAGCAAGAAAGATGACAAT 233
Query 181 CATAGCTTTTCAGCTAGACCTGACGAAGCCACTGGTCCTTTTCCTGAATCCGTTCTTCTC 240
|||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 234 CATAACTTTTCAGCTAGACCTGACGAAGCCACTGGTCCTTTTCCTGAATCCATTCTTCTC 293
Query 241 AAAGAGAAAAAGGTTGATGAAGAAGGTGAT-TTGCTTCCCGAGTTTGCTGATGCTGAAGA 299
|||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 294 AAAGAGAAGAAGATTGATGAAGAAGGTGATCTT-CTTCCCGAGTTTGCTGATGCTGAAGA 352
Query 300 AAAGGAGCTATATGAGTTTCTGGATCTTCAGCTTCAGAGTGACTTGAATGAAGAAAGGAT 359
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AAAGGAGCTATATCAGTTTCTGGATCTTCAGCTTCAGAGTGACTTGAATGAAGAAAGGAT 412
Query 360 GAGACACTATGAGGTGGTTTACTTGATTCATGAAAAACATGCTGAAGAGGTTGAAAACAT 419
||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 413 GAGGCACTATGAGGTGGTTTACTTGATTCATGAAAAACATGCTGAGGAGGTTGAAAGCAT 472
Query 420 CAACCAGAAAGTACAAGATTTCCTGAAGGAGAAGAAGGGGAAAGTTTGGAGGTTCAGTGA 479
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 473 TAACCAGAAAGTACAAGATTACCTGAAGGAGAAGAAGGGGAAAGTTTGGAGGTTTAGTGA 532
Query 480 TTGGGGAATGCGTAGACTGGCATACAAAATACAGAAGGCAGAGAATGCACATTATATACT 539
||||||||||||||||||||| |||||||||||||||||||||||||| || ||||||||
Sbjct 533 TTGGGGAATGCGTAGACTGGCTTACAAAATACAGAAGGCAGAGAATGCGCACTATATACT 592
Query 540 GATGAACTTTGAGATAGAGGCAAAATACTTGAACGAATTCAAGGGATTGCTGGATAGTGA 599
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct 593 GATGAACTTTGAGATAGAGGCAAAATACTTGAACGAATTCAAGGGATTGTTAGATAGTGA 652
Query 600 TGAGAGGGTGATTAGGCATCTCGTGATGAAACGTGATGAGGCCATTACTGAAGACTGCCC 659
||||||||||||||||||||| ||||||||||||||||||||||| || |||||||| ||
Sbjct 653 TGAGAGGGTGATTAGGCATCTTGTGATGAAACGTGATGAGGCCATAACCGAAGACTGTCC 712
Query 660 TCCACCTCCTGAGTTTCACTCTGTTCGGGCAGGTGATGAATATTatgatgatgatgaaga 719
|||||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct 713 TCCACCTCCTGAGTTTCACTCTGTCCGCGCAGGTGATGAATATTATGACGATGATGAAGA 772
Query 720 ggaagag---gaagagtttgatgtagatgagggtgagggtgaagatgaagaagatGGTGA 776
||||||| ||||| |||| |||||| ||||||||||||||||||||||||| |||
Sbjct 773 GGAAGAGATTGAAGAA---GATGAAGATGAAGGTGAGGGTGAAGATGAAGAAGATGCTGA 829
Query 777 TAATATAGAGTATGAAGTAGATGATGATGGTAATGTTGTTATGGTGTTGTATGGAGATGA 836
|||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 830 TAATATAGAGTACGAAGTAGATGATGATGGTAATGTCGTTATGGTGTTGTACGGAGATGA 889
Query 837 AGAAG--G-AGCAGAAGAAGAAGATGG-GACTAGTGAACCAGAAGAAGGACATGACAAGT 892
||||| | || ||||||||||||||| | ||||||||| |||||||||||| |||||||
Sbjct 890 AGAAGAAGGAGAAGAAGAAGAAGATGGAG-CTAGTGAACAAGAAGAAGGACAGGACAAGT 948
Query 893 CAACTAACGGCAGAAGAGAAACCCGGAGAACAGTTAACGTAGGAGGGTAG 942
||||||| || ||||||||||||||||||||||||||||||||||| |||
Sbjct 949 CAACTAATGGTAGAAGAGAAACCCGGAGAACAGTTAACGTAGGAGGTTAG 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46064712799
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5