BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318486
Length=1065
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17230.1 | Symbols: | invertase/pectin methylesterase inhib... 1395 0.0
AT3G17225.1 | Symbols: | Plant invertase/pectin methylesterase... 826 0.0
> AT3G17230.1 | Symbols: | invertase/pectin methylesterase inhibitor
family protein | chr3:5886381-5889236 REVERSE LENGTH=1056
Length=1056
Score = 1395 bits (755), Expect = 0.0
Identities = 968/1067 (91%), Gaps = 29/1067 (3%)
Strand=Plus/Plus
Query 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCGTTCTTCTA 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTTCTCGTTCTTCTA 60
Query 61 TCAGTCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAATCACAAAAGACTTACTT 120
||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 61 TCAATCACCCCTTTGTCTTCATCTTTATCTCCGAGTGACAAAATCACAAAAGATTTACTT 120
Query 121 TA-CTACCTCTGCAC-AGAACCAAACATTGA-CAGCAGCTTCTGCATCCCTTGGCTAACC 177
| | | |||||| | || || ||||||| || | |||||||||| |||||||||||
Sbjct 121 CAGC-AACTCTGCGCAAG-TCCGCACATTGACCA-CCCCTTCTGCATCACTTGGCTAACC 177
Query 178 TCTGATCCAACAACATTCACTCTCGACCTACAAGGTCTTCTCGATTTGGTCTTCCAAAAG 237
||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 178 GCTGATCCTACAACATTCACCCTCGACCTACAAGGTCTTCTCGATTTAGTCTTCCAAAAG 237
Query 238 ACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGAGAACCA-TGCC 296
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
Sbjct 238 ACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCGCAGTGAGAACCACT-AC 296
Query 297 TGGTTCGACGCTCAAGATCC-CATTTGAGACTTGCGTGAAAGATTATGAATCAGCCATTA 355
|| | ||||||||| || || ||| |||||||||||||| |||||||||| ||||||||
Sbjct 297 TGATCCGACGCTCAGGA-CCTCATATGAGACTTGCGTGAGAGATTATGAAGGAGCCATTA 355
Query 356 AATCGATCGAGGAAGCTCAAGGGTTTCTGACCTCTAAGGCGTACGC-GTTAGCATCTCAA 414
|| ||||||||||||||||||||| | ||||||||||||||||| | |||||||||||||
Sbjct 356 AAGCGATCGAGGAAGCTCAAGGGTCTGTGACCTCTAAGGCGTAC-CAGTTAGCATCTCAA 414
Query 415 GGGGCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGCT 474
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 415 GGGGCTGCTAAAGCCTTTGTTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGAT 474
Query 475 GATGTGCCGGCTTATGGTGCCAAGAA-AATGGCTTATCCTTGCGTCAAAAGAAACGTATT 533
|||||| | | ||||| || ||||||||||||||||||||||||||||||||
Sbjct 475 GATGTG-C--C-------GCCAAAAACAATGGCTTATCCTTGCGTCAAAAGAAACGTATC 524
Query 534 TTCACTTCTTCCTCTACTCGTTCTTCTATCAGTCACCCCTTTGTCTTCATCTTTGTCTCC 593
||||||||||||||| ||||||||||||||| |||| ||||| || ||||||||||||||
Sbjct 525 TTCACTTCTTCCTCTTCTCGTTCTTCTATCAATCACTCCTTTTTCATCATCTTTGTCTCC 584
Query 594 GAGTGACAAAGTCACAAAAGGATTACTTTACCAACTCTGCACAAAACCGAACATTGACAG 653
|||||||||||||||||| | | |||| ||||||||||| ||||||| |||||| |||
Sbjct 585 GAGTGACAAAGTCACAAACGAAACACTTAACCAACTCTGCTCAAAACCAAACATTTACAA 644
Query 654 CTACTTCTGCATCCCTTGGCTAAACTCTGATCCAACAACATTCACCCTCGACCTACAAGG 713
| ||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 645 CCACTTCTGCATCGCTTGGCTAACCTCTGATCCTACAACATTCACCCTCGACCTACAAGG 704
Query 714 TCTTCTCGATTTGGTCTTCCAAAAGACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGAT 773
||||||||||| ||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TCTTCTCGATTCGGTTTTTCAAAAGACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGAT 764
Query 774 GAAAGGCTCAGTGAGA-ACCACGACTGATCCGACGCTCAAGATCCCATTTGAGACTTGCG 832
|||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 765 GAAAGGCTCAGTGA-ATACCACGACTGATCCGGCGCTCAAGATCCCATTTGAGACTTGCG 823
Query 833 TGAAAGATTATGAAGTAGCCATTAAAGCGATCGAGGAAGCTCAAGGGTTTGTGACCTCTA 892
||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 824 TGACGGATTATGAAGTAGCCATTAAAGCGATCGAGGAAGCTCAAGGGTTTGTGACATCTA 883
Query 893 AGGCGTACC-CGTTAGCATCTCAAGGGGCTGCTAAAGCCTTCATTAGTATATCAGTGTGT 951
|||||||| | |||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 884 AGGCGTACGAC-TTAGCATCTCTGGGGGCAGCTAAAGCCTTCATTAGTATATCAGTGTGT 942
Query 952 GAAGCTCAGTTTGAAGGACGGGTTAATGTGCCGGATTATGTAGCGAAACTCAAT-TCATT 1010
||| |||||||||||||||||| ||||||||| | ||||||| ||||||||||| | ||
Sbjct 943 GAAACTCAGTTTGAAGGACGGGATAATGTGCCAGTTTATGTAACGAAACTCAATATG-TT 1001
Query 1011 TTTTAAAAGAATGTGTAACATTGATAGGGTTTTCTCCGACGTTTTGA 1057
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1002 TTTTAAGAGAATGTGTAACATTGATAGGGTTTTCTCCGACGTTTTGA 1048
Score = 699 bits (378), Expect = 0.0
Identities = 451/486 (93%), Gaps = 6/486 (1%)
Strand=Plus/Plus
Query 502 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCGTTCTTCTA 561
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTTCTCGTTCTTCTA 60
Query 562 TCAGTCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAGTCACAAAAGGATT-ACT 620
||| |||||||||||||||||||||| ||||||||||||||| ||||||||| ||| |||
Sbjct 61 TCAATCACCCCTTTGTCTTCATCTTTATCTCCGAGTGACAAAATCACAAAAG-ATTTACT 119
Query 621 TTACCAACTCTGCACAAAACCGAACATTGAC-AGCTACTTCTGCATCCCTTGGCTAAACT 679
| | ||||||||| ||| ||| |||||||| | | |||||||||| ||||||||| |
Sbjct 120 TCAGCAACTCTGCGCAAGTCCGCACATTGACCACCC-CTTCTGCATCACTTGGCTAACCG 178
Query 680 CTGATCCAACAACATTCACCCTCGACCTACAAGGTCTTCTCGATTTGGTCTTCCAAAAGA 739
||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 179 CTGATCCTACAACATTCACCCTCGACCTACAAGGTCTTCTCGATTTAGTCTTCCAAAAGA 238
Query 740 CGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGAGAACCACGACTG 799
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||
Sbjct 239 CGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCGCAGTGAGAACCACTACTG 298
Query 800 ATCCGACGCTCAAGATCC-CATTTGAGACTTGCGTGAAAGATTATGAAGTAGCCATTAAA 858
|||||||||||| || || ||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 299 ATCCGACGCTCAGGA-CCTCATATGAGACTTGCGTGAGAGATTATGAAGGAGCCATTAAA 357
Query 859 GCGATCGAGGAAGCTCAAGGGTTTGTGACCTCTAAGGCGTACCCGTTAGCATCTCAAGGG 918
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 358 GCGATCGAGGAAGCTCAAGGGTCTGTGACCTCTAAGGCGTACCAGTTAGCATCTCAAGGG 417
Query 919 GCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGTTAAT 978
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 418 GCTGCTAAAGCCTTTGTTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGATGAT 477
Query 979 GTGCCG 984
||||||
Sbjct 478 GTGCCG 483
Score = 628 bits (340), Expect = 2e-179
Identities = 444/494 (90%), Gaps = 8/494 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCGTTCTTCTA 60
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 493 ATGGCTTATCCTTGCGTCAAAAGAAACGTATCTTCACTTCTTCCTCTTCTCGTTCTTCTA 552
Query 61 TCAGTCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAATCACAAAAGACTTACTT 120
||| |||| ||||| || |||||||||||||||||||||||| ||||||| || ||||
Sbjct 553 TCAATCACTCCTTTTTCATCATCTTTGTCTCCGAGTGACAAAGTCACAAACGAAACACTT 612
Query 121 TACTACCTCTGCACAGAACCAAACATTGAC-AGCAGCTTCTGCATCCCTTGGCTAACCTC 179
|| | |||||| || ||||||||||| || | || |||||||||| |||||||||||||
Sbjct 613 AACCAACTCTGCTCAAAACCAAACATTTACAACCA-CTTCTGCATCGCTTGGCTAACCTC 671
Query 180 TGATCCAACAACATTCACTCTCGACCTACAAGGTCTTCTCGATTTGGTCTTCCAAAAGAC 239
|||||| ||||||||||| ||||||||||||||||||||||||| ||| || ||||||||
Sbjct 672 TGATCCTACAACATTCACCCTCGACCTACAAGGTCTTCTCGATTCGGTTTTTCAAAAGAC 731
Query 240 GCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGAGA-ACCATGCCTG 298
||||||||||||||||||||||||||||||||||||||||||||||| | |||| | |||
Sbjct 732 GCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGA-ATACCACGACTG 790
Query 299 GTTCGACGCTCAAGATCCCATTTGAGACTTGCGTGAAAGATTATGAA-TCAGCCATTAAA 357
| || |||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct 791 ATCCGGCGCTCAAGATCCCATTTGAGACTTGCGTGACGGATTATGAAGT-AGCCATTAAA 849
Query 358 TCGATCGAGGAAGCTCAAGGGTTTCTGACCTCTAAGGCGTACG-CGTTAGCATCTCAAGG 416
||||||||||||||||||||||| |||| ||||||||||||| | |||||||||| ||
Sbjct 850 GCGATCGAGGAAGCTCAAGGGTTTGTGACATCTAAGGCGTACGAC-TTAGCATCTCTGGG 908
Query 417 GGCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGCTGA 476
||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| | |
Sbjct 909 GGCAGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAACTCAGTTTGAAGGACGGGATAA 968
Query 477 TGTGCCGGCTTATG 490
|||||| | |||||
Sbjct 969 TGTGCCAGTTTATG 982
> AT3G17225.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:5884374-5884931 REVERSE
LENGTH=558
Length=558
Score = 826 bits (447), Expect = 0.0
Identities = 529/567 (93%), Gaps = 12/567 (2%)
Strand=Plus/Plus
Query 502 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCGTTCTTCTA 561
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCCTTCTTCTA 60
Query 562 TCAGTCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAGTCACAAAAGGATTACTT 621
||| ||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 61 TCAATCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAGTCACAAAAACCTT-CTT 119
Query 622 -TACCAACTCTGCACAAAACCGAACATTGACAGCTACTTCTGCATCCCTTGGCTAAACTC 680
| || |||||||||| ||||| ||||||||| | ||||||||||| ||||||||| |||
Sbjct 120 ATCCCGACTCTGCACAGAACCGCACATTGACACCAACTTCTGCATCACTTGGCTAATCTC 179
Query 681 TGATCCAACAACAT-TCACCCTCGACCTACAAGGTCTTCTCGATTTGGTCTTCCAAAAGA 739
|||||||||||||| | ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 180 TGATCCAACAACATAT-ACCCTCGACCTACAAGGTCTTCTCGATTTAGTCTTCCAAAAGA 238
Query 740 CGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGAGA-ACCACGACT 798
||||||| |||||| |||||| |||||||||||||||||||||||||| | |||||||||
Sbjct 239 CGCAATTATTGGGCAATAAGAACCTAGCGGCGATGAAAGGCTCAGTGA-ATACCACGACT 297
Query 799 GATCCGACGCTCAAGATCCCATTTGAGACTTGCGTGAAAGATTATGAAGTAGCCATTAAA 858
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 298 GATCCGACGCTCAAGATCCCATTTGAGACTTGCGTGAGAGATTATGAAGGAGCCATTAAA 357
Query 859 GCGATCGAGGAAGCTCAAGGGTTTGTGACCTCTAAGGCGTACCCGTTAGCATCTCAAGGG 918
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 358 GCGATCGAGGAAGCTCAAGGGTTTGTGACCTCTAAGGCGTACCCGTTAGCATCTCAAGGG 417
Query 919 GCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGACGGGTTAAT 978
|||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 418 GCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGCAGGA------AAT 471
Query 979 GTGCCGGATTATGTAGCGAAACTCAATTCATTTTTTAAAAGAATGTGTAACATTGATAGG 1038
||||||| ||||||||| |||||||||| |||||||| ||||||||||| |||||||||
Sbjct 472 GTGCCGGCTTATGTAGCAAAACTCAATTTGTTTTTTAAGAGAATGTGTAATATTGATAGG 531
Query 1039 GTTTTCTCCGACGTTTTGACTTCTTGA 1065
|||||||||||||||||||||||||||
Sbjct 532 GTTTTCTCCGACGTTTTGACTTCTTGA 558
Score = 660 bits (357), Expect = 0.0
Identities = 436/473 (92%), Gaps = 10/473 (2%)
Strand=Plus/Plus
Query 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCGTTCTTCTA 60
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGGCTTATCCTTGCGTCAAAAGAAACGTATTTTCACTTCTTCCTCTACTCCTTCTTCTA 60
Query 61 TCAGTCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAATCACAAAAGA-CTTACT 119
||| |||||||||||||||||||||||||||||||||||||| |||||||| | ||| ||
Sbjct 61 TCAATCACCCCTTTGTCTTCATCTTTGTCTCCGAGTGACAAAGTCACAAAA-ACCTT-CT 118
Query 120 T-T-ACTACCTCTGCACAGAACCAAACATTGACAGCAGCTTCTGCATCCCTTGGCTAACC 177
| | | | |||||||||||||| ||||||||| || |||||||||| ||||||||| |
Sbjct 119 TATCCCGA-CTCTGCACAGAACCGCACATTGACACCAACTTCTGCATCACTTGGCTAATC 177
Query 178 TCTGATCCAACAACAT-TCACTCTCGACCTACAAGGTCTTCTCGATTTGGTCTTCCAAAA 236
|||||||||||||||| | || |||||||||||||||||||||||||| |||||||||||
Sbjct 178 TCTGATCCAACAACATAT-ACCCTCGACCTACAAGGTCTTCTCGATTTAGTCTTCCAAAA 236
Query 237 GACGCAATTGTTGGGCTATAAGAGCCTAGCGGCGATGAAAGGCTCAGTGAGA-ACCATGC 295
||||||||| |||||| |||||| |||||||||||||||||||||||||| | |||| |
Sbjct 237 GACGCAATTATTGGGCAATAAGAACCTAGCGGCGATGAAAGGCTCAGTGA-ATACCACGA 295
Query 296 CTGGTTCGACGCTCAAGATCCCATTTGAGACTTGCGTGAAAGATTATGAATCAGCCATTA 355
||| | ||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 296 CTGATCCGACGCTCAAGATCCCATTTGAGACTTGCGTGAGAGATTATGAAGGAGCCATTA 355
Query 356 AATCGATCGAGGAAGCTCAAGGGTTTCTGACCTCTAAGGCGTACGCGTTAGCATCTCAAG 415
|| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 356 AAGCGATCGAGGAAGCTCAAGGGTTTGTGACCTCTAAGGCGTACCCGTTAGCATCTCAAG 415
Query 416 GGGCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGAAGGA 468
|||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 416 GGGCTGCTAAAGCCTTCATTAGTATATCAGTGTGTGAAGCTCAGTTTGCAGGA 468
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52158366255
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5