BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318490
Length=951
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17265.1 | Symbols: | F-box and associated interaction doma... 773 0.0
AT2G13128.1 | Symbols: | pseudogene of F-box family protein | ... 409 3e-113
AT3G24700.1 | Symbols: | F-box and associated interaction doma... 285 5e-76
AT2G13116.1 | Symbols: | pseudogene, hypothetical protein | ch... 241 1e-62
AT2G13126.1 | Symbols: | unknown protein; Has 35333 Blast hits... 191 1e-47
> AT3G17265.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:5899515-5900637 REVERSE LENGTH=1038
Length=1038
Score = 773 bits (418), Expect = 0.0
Identities = 594/676 (88%), Gaps = 24/676 (4%)
Strand=Plus/Plus
Query 142 GTGACAGAGATGAATACTCTGATCCATAGCATCAATCTCCGTGGAATCCAAAACAGCTTT 201
|||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||
Sbjct 190 GTGACAGAGATGAATACTTTGGTTCATAGCATCAATCTCCGTGGAATCCAAAACAGCTTT 249
Query 202 GATTCATCCATTGGGGTCG-ATGTTAAACTTTACGAGCTAAAGGATCCAGAACATGATAA 260
||| |||||||||| || | | | |||||||||||||||||| ||||| |||||||||||
Sbjct 250 GATCCATCCATTGGTGTTGAACG-TAAACTTTACGAGCTAAATGATCCTGAACATGATAA 308
Query 261 GATACGTT-GTATTATCTCTCACTGTGATGGTTTATTATTGTGCACTACCAAGGACAATA 319
||||| || |||||||||||||||| |||||||||||||||||| ||||||||||| |
Sbjct 309 GATAC-TTGGTATTATCTCTCACTGCGATGGTTTATTATTGTGCGCTACCAAGGAC---A 364
Query 320 ATAGTAGAGTCGTGGTTTGGAACCCTTGTACTGGTCAAACCAGGTGGATCC-AATC--CA 376
| | |||| |||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 365 AGACTAGACTCGTGGTTTGGAACCCTTGTACTGGTCAAACCAGGTGGATCCAAATCAAGA 424
Query 377 ATATGTTCATG---AA----CAG-TTATTCTCTT-G---CTAAGTTTGAGATCTATGAGT 424
|| |||||| | || ||| |||||||||| | ||||||| | ||||||||||
Sbjct 425 ATGTGTTCAAGAACAATCCCCAGCTTATTCTCTTGGTAATTAAGTTTAAAATCTATGAGT 484
Query 425 TCAACTCTGATTCATGGAGAATTCTTGATGAGATCTCTCCTGATTGTTTCAGACGTTCCG 484
||||||||||||||||||||||||||||||| |||||||||| |||||||| ||| ||
Sbjct 485 TCAACTCTGATTCATGGAGAATTCTTGATGACATCTCTCCTGTTTGTTTCATACGCTCAA 544
Query 485 ATGGCGTGACTTTGAAGGGAAATGCTTATTG-GTTTGGTTCAAATCTAGAAAGCAAATCC 543
||||||||| |||||||||||||||||||| ||| | |||| || ||||||||||| |
Sbjct 545 ATGGCGTGAATTTGAAGGGAAATGCTTATTTTGTT-GCTTCAGATAAAGAAAGCAAATTC 603
Query 544 ATACTCAAGTTTGATTTCACAACAGAGAGATTCGGACGTCTATCGCTTCCTTTTCAGAAT 603
||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||
Sbjct 604 ATACTCAAGTTTGATTTCACAACAGAGAGATTCCTACGTCTATCGTTTCCTTCTCAGAAC 663
Query 604 AATTATCGAAGTGTGTTTCTATCAGTTGTTAGAGAAGAGAAACTTGCCTTGATACAACAG 663
|| ||| || || | ||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 664 GATGATCAAATTGCGGTTCTATCAGTTGTTAGACAAGAGAAACTTGCCTTGTTACAACAA 723
Query 664 AGGCTTGATACAGATTCATTAAAGATGAATATATGGGTGACCAAAACTAAGATCGATGAG 723
||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 724 AGGTTTGATACATCTTCAATAAAGATGAATATATGGGTGACCAAAACTAAGATCGATGCG 783
Query 724 GACAAAGACTTGTCTTGGAGCAACTTCTTAGTAGTGGATTTTGGTAGATTTCCGTTAACA 783
||||||||||||||||||||||||||||||||||| |||||||||| | || | ||||||
Sbjct 784 GACAAAGACTTGTCTTGGAGCAACTTCTTAGTAGTAGATTTTGGTAAAGTTACATTAACA 843
Query 784 AGTGAGACGTTGAGTT 799
|||||| |||||||||
Sbjct 844 AGTGAGCCGTTGAGTT 859
Score = 219 bits (118), Expect = 5e-56
Identities = 134/142 (94%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 1 ATGATGTTTGCTGATCTTCCAAGTGATTTAGAATCCGAAATACTCTCTAGGGTTCCTGCC 60
|||||||||||| |||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGATGTTTGCTTATCTTCCACCTGATTTAGAATCGGAAATACTCTCTAGGGTTCCTGCC 60
Query 61 ACATCTCTAAAAGAATTGCAAACTACTTGCAAACGATGGTACACTTTATTTAGAGATCCA 120
|||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 ACATTTCTAAAAGAATTGCAAACTACTTGCAAACGATGGTACGCTTTATTTAGAGATCCG 120
Query 121 AGATTCGTCAAGAAGAACTTGG 142
| ||||||||||||||||||||
Sbjct 121 ATATTCGTCAAGAAGAACTTGG 142
Score = 191 bits (103), Expect = 1e-47
Identities = 121/130 (93%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 813 GATTAGTCACATTGAAAAGAAGATTAGAATTTACTTTGCTAAAGAGGGTATACAAGTTCA 872
|||| |||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 903 GATTCGTCACATTGAAAGGAAGACTATAATTTACTTTGCTAAAGAGGGTATACAAGTTCA 962
Query 873 TCAAAAGATTGCACGGAAACCCAAAGGTTGTTGTCCATTTCTCGTCAGCTATGTTCCAAG 932
|||| ||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||
Sbjct 963 TCAAGAGATTGCACAGAAACCAAAAGGTTGTTGTTCATTTCTCGTCAGTTATGTTCCAAG 1022
Query 933 TTTGGTTCAA 942
||||||||||
Sbjct 1023 TTTGGTTCAA 1032
> AT2G13128.1 | Symbols: | pseudogene of F-box family protein
| chr2:5418240-5419103 REVERSE LENGTH=864
Length=864
Score = 409 bits (221), Expect = 3e-113
Identities = 350/409 (86%), Gaps = 21/409 (5%)
Strand=Plus/Plus
Query 390 CAG-TTATTCTCTTGCTAAGTTTGAGATCTATGAGTTCAACTCTGATTCATGGAGAATTC 448
||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 463 CAGCTTATTCTCTTGGTAAGTTTGAAATCTATGAGTTCAACTCTGATTCATGGAGAATTC 522
Query 449 TTGATGA-GATCTCTCCTGATTGTTTCA-GACGTTCCGATGGCGTGACTTTGAAGGGAAA 506
|||||| | |||||||| |||||||| | | || ||||| ||||||||||| |||||
Sbjct 523 TTGATGGCG-TCTCTCCTAATTGTTTCCTG-CATTTTGATGGTGTGACTTTGAAAGGAAA 580
Query 507 TGCTTATTGGT-TTGGTTCAAATCTAGAAAGCAAATCCATACTCAAGTTTGATTTCACAA 565
| ||||||||| || |||| || |||| |||||| |||||||||||||||||||||||
Sbjct 581 TACTTATTGGTCTTC-TTCAGATAAAGAAGGCAAATTCATACTCAAGTTTGATTTCACAA 639
Query 566 CAGAGAGATTCGGACGTCTATCGCTTCCTTTTCAGAATAAT--TATCGAAG-T-----G- 616
|| |||||||| ||||||||||||||||| || |||||||| ||| || | | |
Sbjct 640 CAAAGAGATTCCGACGTCTATCGCTTCCTATTGAGAATAATCATAT-GATGATTAAAAGG 698
Query 617 TGTTTCTATCAGTTGTTAGAGAAGAGAAACTTGCCTTGAT-ACAACAGAGGCTTGATACA 675
|| ||| |||||||||||||||||||||| |||||||||| | |||| ||| ||||||||
Sbjct 699 TGGTTC-ATCAGTTGTTAGAGAAGAGAAATTTGCCTTGATGA-AACATAGGTTTGATACA 756
Query 676 GATTCATTAAAGATGAATATATGGGTGACCAAAACTAAGATCGATGAGGACAAAGACTTG 735
|||||| |||||||||||||||| ||||| ||| |||| ||||| | ||||||||||||
Sbjct 757 -ATTCATCAAAGATGAATATATGGTTGACCGAAAGTAAGCTCGATTATGACAAAGACTTG 815
Query 736 TCTTGGAGCAACTTCTTAGTAGTGGATTTTGGTAGATTTCCGTTAACAA 784
||||||||||| ||||| |||||||||||||||| | || |||||||||
Sbjct 816 TCTTGGAGCAAATTCTTGGTAGTGGATTTTGGTAAAGTTACGTTAACAA 864
Score = 207 bits (112), Expect = 1e-52
Identities = 128/136 (94%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 7 TTTGCTGATCTTCCAAGTGATTTAGAATCCGAAATACTCTCTAGGGTTCCTGCCACATCT 66
|||| |||||||||| |||||||||||| ||||||||||||||||||| ||||||| |
Sbjct 1 TTTGATGATCTTCCACTTGATTTAGAATCGGAAATACTCTCTAGGGTTCGAGCCACATGT 60
Query 67 CTAAAAGAATTGCAAACTACTTGCAAACGATGGTACACTTTATTTAGAGATCCAAGATTC 126
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 61 CTAAAAGAATTGCAAACTACTTGCAAACGATGGTACTCTTTATTTAGAGATCCAAGATTC 120
Query 127 GTCAAGAAGAACTTGG 142
||||||||||||||||
Sbjct 121 GTCAAGAAGAACTTGG 136
> AT3G24700.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:9022281-9023030 FORWARD LENGTH=750
Length=750
Score = 285 bits (154), Expect = 5e-76
Identities = 211/238 (89%), Gaps = 5/238 (2%)
Strand=Plus/Plus
Query 143 TGACAGAGATGAATACTCTGATCCATAGCATCAATCTCCGTGGAATCCAAAACAGCTTTG 202
||||||| || ||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 188 TGACAGATATAAATTCTCTGATTCATAGCATCAATCTCCGTGGAATCCAAAACAGCTTTG 247
Query 203 ATTCATCCATTGGGGTCGATGTTAAACTTTACGAGCTAAAGGATCCA-GAACATGATAAG 261
|| |||||||||||||||| ||||||||| ||| |||||||||||| || |||||||||
Sbjct 248 ATCCATCCATTGGGGTCGACGTTAAACTTAACGTTCTAAAGGATCCAAGA-CATGATAAG 306
Query 262 ATACGTTGTATTATCTCTCACTGTGATGGTTTATTATTGTGCACTACCAAGGACAATAAT 321
||| || ||||||||||||||| ||||||||||||||||||| ||| ||||| || |
Sbjct 307 ATAAGTCATATTATCTCTCACTGCGATGGTTTATTATTGTGCAAGACCGAGGAC--TA-T 363
Query 322 AGTAGAGTCGTGGTTTGGAACCCTTGTACTGGTCAAACCAGGTGGATCCAATCCAATA 379
||||| ||||||||||||||||||| |||||||||| || |||||||||| ||||||
Sbjct 364 GGTAGACTCGTGGTTTGGAACCCTTGCACTGGTCAAATCAAGTGGATCCAAGCCAATA 421
Score = 108 bits (58), Expect = 1e-22
Identities = 169/218 (78%), Gaps = 25/218 (11%)
Strand=Plus/Plus
Query 405 TAAGTTTGAGATCTATGAGTTCAACTCTGATTCATGGAGAATTCTTGATGA-GATCTCTC 463
||||| | | |||||||||||||||||||||||||||||||||||||| | | ||||||
Sbjct 531 TAAGTCTAAAATCTATGAGTTCAACTCTGATTCATGGAGAATTCTTGACCACG-TCTCTC 589
Query 464 CTGATTGTTTCAG-ACGT-TCCGATGGCGTGACTTTGAAGGGAAATGCTTATTGGTTTGG 521
| | || ||| | | | ||| | | | ||||||||||||||||||||||||||||||
Sbjct 590 CCGGTTACTTC-GCAA-TATCCAAAGCCATGACTTTGAAGGGAAATGCTTATTGGTTTGC 647
Query 522 TTCA-A-----AT-CT--AGA-AA-GCAA-A---TCCATACTCAAGTTTGATTTCACAA- 565
|||| | || || ||| || | || | | | ||| ||| |||||||||| ||
Sbjct 648 TTCAGATTGGTATGCTTCAGATAAAGAAAGAAAATTCTTACACAAATTTGATTTCAGAAG 707
Query 566 CAGAGAGATTCGGACGTCTATCGC-TTCCTTTTCAGAA 602
| |||||||| |||||||||| | ||||| |||||||
Sbjct 708 C-GAGAGATTTGGACGTCTAT-GTATTCCTATTCAGAA 743
> AT2G13116.1 | Symbols: | pseudogene, hypothetical protein |
chr2:5409925-5410530 REVERSE LENGTH=606
Length=606
Score = 241 bits (130), Expect = 1e-62
Identities = 204/238 (86%), Gaps = 11/238 (5%)
Strand=Plus/Plus
Query 142 GTGACAGAGATGAATACTCTGATCCATAGCATCAATCTCCGTGGAATCCAAAACAGCTTT 201
||| |||||||||||||||| || ||||| ||||||||||||||||||||||||||||||
Sbjct 226 GTGGCAGAGATGAATACTCTAATTCATAGTATCAATCTCCGTGGAATCCAAAACAGCTTT 285
Query 202 GATTCATCCATTGGGGTCGATGTTAAACTTTACGAGCTAAAGGATCCAGAACATGATAAG 261
||| |||||||||||| | | ||||||| ||| ||| | || |||||||||||| || ||
Sbjct 286 GATCCATCCATTGGGGGCCAAGTTAAAC-TTA-GAG-TTAATGATCCAGAACATTAT-AG 341
Query 262 ATACGTTGTATTATCTCTCACTGTGATGGTTTATTATTGTGCACTACCAAGGACAATAAT 321
|| | |||||||||||||||||||||||||||| ||||||||||| || ||||
Sbjct 342 AT-C---ATATTATCTCTCACTGTGATGGTTTATTACTGTGCACTACCGTTGA---TAAT 394
Query 322 AGTAGAGTCGTGGTTTGGAACCCTTGTACTGGTCAAACCAGGTGGATCCAATCCAATA 379
||| ||| | |||||||||||||||| || ||||||||||||||||| |||||||||
Sbjct 395 AGTGGAGCCATGGTTTGGAACCCTTGCACAGGTCAAACCAGGTGGATAAAATCCAATA 452
Score = 87.9 bits (47), Expect = 2e-16
Identities = 53/56 (95%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 393 TTATTCTCTTGCTAAGTTTGAGATCTATGAGTTCAACTCTGATTCATGGAGAATTC 448
||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 551 TTATTCTATCGCTAAGTTTGAAATCTATGAGTTCAACTCTGATTCATGGAGAATTC 606
> AT2G13126.1 | Symbols: | unknown protein; Has 35333 Blast hits
to 34131 proteins in 2444 species: Archae - 798; Bacteria
- 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). | chr2:5416690-5416872
REVERSE LENGTH=183
Length=183
Score = 191 bits (103), Expect = 1e-47
Identities = 127/138 (92%), Gaps = 4/138 (3%)
Strand=Plus/Plus
Query 7 TTTGCTGATCTTCCA-AGTGATTTAGAATCCGAAATACTCTCTAGGG--TTCCTGCCACA 63
||||||||||||||| | ||||||||||| || ||||||||||||| |||| ||||||
Sbjct 7 TTTGCTGATCTTCCACA-TGATTTAGAATTGGAGATACTCTCTAGGGAATTCCAGCCACA 65
Query 64 TCTCTAAAAGAATTGCAAACTACTTGCAAACGATGGTACACTTTATTTAGAGATCCAAGA 123
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 66 TCTCCAAAAGAATTGCAAACTACTTGCAAACGATGGTATACTTTATTTAGAGATACAAGA 125
Query 124 TTCGTCAAGAAGAACTTG 141
||||||||||||||||||
Sbjct 126 TTCGTCAAGAAGAACTTG 143
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46516820122
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5