BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318525
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT3G17660.1 | Symbols: AGD15 | ARF-GAP domain 15 | chr3:6037598... 1171 0.0
> AT3G17660.1 | Symbols: AGD15 | ARF-GAP domain 15 | chr3:6037598-6039319
FORWARD LENGTH=1045
Length=1045
Score = 1171 bits (634), Expect = 0.0
Identities = 687/711 (97%), Gaps = 10/711 (1%)
Strand=Plus/Plus
Query 1 ATGAACAGGAAGGCCTCTGTTTCCAAGGAGCTCAACGCCAAGCATTCAAAGATATTGGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 ATGAACAGGAAGGCCTCTGTTTCCAAGGAGCTCAACGCCAAGCATTCAAAGATATTGGAA 179
Query 61 GCACTTTTAAAGCATCCAGACAATCGAGAATGTGCAGATTGTAGATCAAAGGCACCAAGA 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GCACTTTTGAAGCATCCAGACAATCGAGAATGTGCAGATTGTAGATCAAAGGCACCAAGA 239
Query 121 TGGGCAAGTGTGAACCTTGGGATATTCATTTGTATGCAATGCTCTGGAATCCATCGTAGC 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 240 TGGGCAAGTGTGAACCTTGGGATATTCATTTGTATGCAATGTTCTGGAATCCATCGTAGC 299
Query 181 CTCGGTGTCCACATCTCACAGGTAAGGTCTATAACTCTGGATACATGGCTTCCAGATCAG 240
|| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 CTTGGCGTCCACATCTCTCAGGTAAGGTCTATAACTCTGGATACATGGCTTCCAGATCAG 359
Query 241 GTTGCTTTCATGAAATCTACCGGTAATGCTAAGGCAAATCAGTATTGGGAATCAGAATTA 300
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||
Sbjct 360 GTTGCTTTCATGAAATCTACCGGTAATGCTAAGGGAAATGAGTATTGGGAATCAGAATTG 419
Query 301 CCTCAACATTTCGAGAGAAGTTCAAGCGACACGTTTATAAGAGCCAAATACAGTGAGAAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 CCTCAACATTTCGAGAGAAGTTCAAGCGACACGTTTATAAGAGCCAAATACAGTGAGAAG 479
Query 361 AGATGGGTTTCACCGGGAGGGATTCAACCGGCTCCTATAGTTAGCCAGCTAAGCTGCAAA 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 AGATGGGTTTCACCGGGAGCGATTCAACCGGCTCCTATAGTTAGCCAGCTAAGCTGCAAA 539
Query 421 GTTAGTCACTTGGTAGAGAGCGGATATAAGCCTGAAACTCCAAAGAAAGCTAGAACTCTT 480
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 540 GTTAGTCACTTGGTAGAGAGTGGATATAAACCTGAAACTCCAAAGAAAGCTAGAACTCTT 599
Query 481 TCACTTGACGAAGAGATCCTTCTTCATCATGTTCTTCAAGTAACACCTCCAGAAACGAGA 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 TCACTTGACGAAGAGATCCTTCTTCATCATGTTCTTCAAGTAACACCTCCAGAAACGAGA 659
Query 541 ACTCGTGCGGGTTCGGTAGATATGAAGGAGAATGTATATGTTGTACCTCTACCAGTGGGG 600
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 ACTCGTGCGGGTTCGGTAGATATGAAGGAGAATGTATATGTTGTACCTCTACCAG----- 714
Query 601 ATGGAATTCAAGAAACCAAATCAAAAGAATGAGATTTTCTCCAGTGAAATAAACCAGAAT 660
| | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 715 A---A-TTCAAGAAACCAAATCAAAAGAATGAGAATTTCTCCAGTGAAGTAAACCAGAAT 770
Query 661 AGAAGAACCACCATAGCACCACCGTCAAGCTGGGCTACTTTCGACTGTAAG 711
|||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 771 AGAAGAACCACCATAGCACCACCGTCGAGCTGGGCTACTTTCGACTG-AAG 820
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5