BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318548

Length=471
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G17890.1 | Symbols:  | unknown protein; Has 31 Blast hits to...   612    1e-174


> AT3G17890.1 | Symbols:  | unknown protein; Has 31 Blast hits 
to 31 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa 
- 5; Fungi - 10; Plants - 12; Viruses - 0; Other Eukaryotes 
- 0 (source: NCBI BLink). | chr3:6127041-6127874 FORWARD 
LENGTH=675
Length=675

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 428/473 (90%), Gaps = 13/473 (3%)
 Strand=Plus/Plus

Query  1    ATGAGGCGGTTACCACCGTGGATGCTCGGTGGCGCGTCCACCGGTGAAGCAGCTCCACGC  60
            ||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct  99   ATGAGGCGGCTACCACCGTGGATGCTCGGTGGCGCGTCAACCGGTGAAGCAGCTGCACGC  158

Query  61   AACGCTTCAGAGCCCGAAGCTCCTAAAACAAAGTCTGAAAAACGACCAAGAAGAGTCCAA  120
            || | |||| | ||||||||||| ||||||||| ||||||||||||||| ||||||||||
Sbjct  159  AATGGTTCACAACCCGAAGCTCCCAAAACAAAGGCTGAAAAACGACCAAAAAGAGTCCAA  218

Query  121  AAACCCAAAGAGAAAGACTTAAATCTCAAATCAGAGGAACCTAAACGAGTTCGTAGGAAG  180
            ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||  ||||||
Sbjct  219  AAAACCAAAGAGAAAGACTTAAATCTCAAGTCAGATGAACCTAAACGAGTTCCCAGGAAG  278

Query  181  A-TCGGAGAAGAAGCTAAGCGTAGTAGCAATGGCCCGGAGATGATTCAGTCAGTGACTTG  239
            | | || |||||||||||||   ||    |  |||||||| ||||||| |||||||| ||
Sbjct  279  ATTAGG-GAAGAAGCTAAGC---GT----A--GCCCGGAGGTGATTCAATCAGTGAC-TG  327

Query  240  -TCCAGAAGATGATGATCTCACAGTTGATGACTTATTAAGCTTTGCTCATGAGTATGTCC  298
             ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  328  TTCCTGAAGATGATGATCTCACAGTTGATGACTTATTAAGCTTTGCTAATGAGTATGTCC  387

Query  299  AACGTGATGAGGAAGAAACAAGAAAGGAGCGTGAAAGAAGCTTGTCAATGTCTGAAACTA  358
            ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  388  AACGTGATGAGGAAGGAACAAGAAAGGAGCGTGAAAGAAGCTTGTCAGTGTCTGAAACTA  447

Query  359  CGCTAGTTCTGGATGAATCCAATACGACAACATCATCTCAAGGAGGAACCAAAGATCCAA  418
            |||||||||| |||||| |||||| ||| ||||||||||||||||||||||||||| |||
Sbjct  448  CGCTAGTTCTCGATGAAACCAATATGACTACATCATCTCAAGGAGGAACCAAAGATTCAA  507

Query  419  CAGCCGATGAAATGTTAGAATTGCTAATGGGTCCTTTTTTCAAGAAACGTTAG  471
            |||| || || |||||| ||||||||||||||||||||| |||||||||||||
Sbjct  508  CAGCAGAAGACATGTTACAATTGCTAATGGGTCCTTTTTACAAGAAACGTTAG  560



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22404429562


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5