BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318572
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT3G27740.1 | Symbols: CARA | carbamoyl phosphate synthetase A ... 1011 0.0
AT3G18145.1 | Symbols: | pseudogene, similar to putative carba... 484 7e-136
> AT3G27740.1 | Symbols: CARA | carbamoyl phosphate synthetase
A | chr3:10281261-10283866 REVERSE LENGTH=1576
Length=1576
Score = 1011 bits (547), Expect = 0.0
Identities = 963/1160 (83%), Gaps = 43/1160 (4%)
Strand=Plus/Plus
Query 152 TTGCACTCTCATACAATGCTAGGCTTGTGTTAGAAGATGGCTCTGTGTGGTCGGCTAAGT 211
||| ||| || ||||||||||||||||||||||||||||| ||| | ||| | |||||||
Sbjct 230 TTGGACT-TCGTACAATGCTAGGCTTGTGTTAGAAGATGGTTCTATCTGGCCTGCTAAGT 288
Query 212 CTTTTGGTGCTTCTGGAACCCGTGTTGCTGAATTGGTTTTTAACACCTCTTTGACAGGGT 271
||||||||||| ||||||||||| ||||||||||||| |||||||| || ||||||||||
Sbjct 289 CTTTTGGTGCTCCTGGAACCCGTATTGCTGAATTGGTGTTTAACACTTCCTTGACAGGGT 348
Query 272 ATCAAGAGATTCTGAC-GAGTCCCAGGCTAAGAAGTTATGCTGGACAATTTGTGCTAATG 330
||||||| ||| | || || | | || ||||||||||| || ||||||||||||
Sbjct 349 ATCAAGAAATTTTAACTGA-T--C---CT----AGTTATGCTGGGCAGTTTGTGCTAATG 398
Query 331 ACAAATCCTCAGATCGGTAACACCGGTGTCAATCCCGATGATGAAGAATCAAGGCAATG- 389
||||| || || || ||||| || ||||||||||| |||||||||||||| |||||||
Sbjct 399 ACAAACCCACAAATTGGTAATACTGGTGTCAATCCTGATGATGAAGAATCTGGGCAATGC 458
Query 390 TTTTTTGGCTGGTTTGGTGATAAGAAGTCTTAGCATCAGTACCTCAAACTGGAGATGTAT 449
||| || |||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 459 TTTCTT-ACTGGTTTGGTGATAAGAAACCTAAGCATTAGTACCTCAAACTGGAGATGCAC 517
Query 450 GATTACACTTGGTGACTATCTAGCAGAGAGGAACATTATGGGAATCTATGATCTTGACAC 509
|| ||||||| ||| |||||| | || ||| |||| |||||| | ||||||||||||||
Sbjct 518 GAAGACACTTGCTGATTATCTAACCGAAAGGGACATCATGGGAGTTTATGATCTTGACAC 577
Query 510 ACGGGCAATAACCCGTCGATTAAGAGAAAG-CGGCAGTCTTAACGGTGTGCTT-AGCACT 567
|| |||||||||||||| ||||||| ||| || ||||||| ||| ||| || |||||
Sbjct 578 TCGAGCAATAACCCGTCGGTTAAGAG-AAGATGGTAGTCTTATCGGGGTG-TTGAGCACA 635
Query 568 G-ATGGATCTAAAACCGACGAGGAACTTTTGCATATGTCCCGCTCTTGGGATATCGTAGG 626
| | | || ||||| || || |||||| |||| ||||| || || ||||||||||||||
Sbjct 636 GAACAG-TCCAAAACAGATGATGAACTTCTGCAAATGTCTCGTTCATGGGATATCGTAGG 694
Query 627 CCTTGATCTAATAAGCAATGTTTCGTGTAAATCTCCCTACGAATGGGTTGAAAAAACAAA 686
||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||
Sbjct 695 TATTGATCTAATAAGTGATGTTTCATGTAAATCTCCCTATGAATGGGTTGACAAAACAAA 754
Query 687 TC-CTGAATGGGAGTTT-AACAC-AACCTCCTCACATCACA-AAG-AATCCTACAGAGTT 741
| |||||||||| ||| ||||| || | |||| | | | ||||||||| ||||
Sbjct 755 -CGCTGAATGGGA-TTTCAACACGAA--T--TCAC--GAGATGGGAAATCCTACAAAGTT 806
Query 742 ATTGCATATGATTTCGGGATCAAGCAAAACATCCTAAGACG-CTTGGCATCATACGGCTG 800
||||| || ||||| || ||||||||||||||||||||||| ||| |||| ||||| ||
Sbjct 807 ATTGCTTACGATTTTGGAATCAAGCAAAACATCCTAAGACGCCTT-TCATCTTACGGATG 865
Query 801 TGAAATCACGGTTGTCCCATCAACATGGCCAGCTGCAGAGGCACTTG-AAATGAATCCAG 859
| ||||||| ||||| || || |||| |||||||| ||||| | || ||||||||||||
Sbjct 866 TCAAATCACTGTTGTTCCGTCCACATTTCCAGCTGCCGAGGCGC-TGAAAATGAATCCAG 924
Query 860 ATGGAATTCTT-TTCAGCAACGGTCCAGGAGATCCTTCTGCAGTGCCTTATGCAGTTGAA 918
|||| ||| || |||||||||||||| ||||| |||||||| ||||| ||||| |||||
Sbjct 925 ATGGGATT-TTGTTCAGCAACGGTCCTGGAGACCCTTCTGCTGTGCCATATGCTGTTGAG 983
Query 919 ACGGTTAAAGAGCTTCTAGGAAAAGTTCCTGTCTATGGAATCTGTATGGGTCATCAGTTA 978
|| |||||||||||||| || ||||| ||||| || |||||||||||||| ||||||||
Sbjct 984 ACAGTTAAAGAGCTTCTCGGTAAAGTCCCTGTTTACGGAATCTGTATGGGCCATCAGTTG 1043
Query 979 CTTGGACAAGCTCTT-GGAGGTAAAACCTAT-AAGATGAAGTTTGGTCATCATGGAGGAA 1036
||||| |||||| || || |||||||||| | ||||||||||||||||||||||||||||
Sbjct 1044 CTTGGTCAAGCT-TTGGGGGGTAAAACCT-TCAAGATGAAGTTTGGTCATCATGGAGGAA 1101
Query 1037 ACCATCCAGTTTGTAACAACAGAACCGGCCATGTCGAGATCAGTGCTCAGAACCATAACT 1096
|||| |||||| ||||||||||||| || || || ||||||||||||||||| || ||||
Sbjct 1102 ACCACCCAGTTCGTAACAACAGAACTGGTCAGGTGGAGATCAGTGCTCAGAATCACAACT 1161
Query 1097 ATGCAGTAGACCCAGCTTCTCTCCCCTCCGGTGTCGAAGTGACTCATGTCAATCTCAACG 1156
|||| || || |||||||| || ||| || || ||||| || |||||||||||||| |
Sbjct 1162 ATGCGGTTGATCCAGCTTCACTTCCCGGAGGCGTAGAAGTAACACATGTCAATCTCAATG 1221
Query 1157 ATGGAAGTTGCGCTGGTCTCTCTTTTCCGGCAATGAATGTCATGTCTCTTCAGTATCACC 1216
||||||| || || ||||| ||||| |||| ||||||||| ||||| || ||||| ||||
Sbjct 1222 ATGGAAGCTGTGCGGGTCTATCTTTCCCGGAAATGAATGTTATGTCACTCCAGTACCACC 1281
Query 1217 CTGAGGCTTCTCCTGGACCTCATGACTCCGATAACGCATTTGGAGAGTTTGTGGAGCTCA 1276
|||| || || ||||||||||| ||||| |||||||||||| ||||||| | ||||| |
Sbjct 1282 CTGAAGCCTCCCCTGGACCTCACGACTCTGATAACGCATTTAGAGAGTTCATAGAGCTTA 1341
Query 1277 TGAAAAGATTTAAACAGAGC 1296
|||| |||| ||||| |||
Sbjct 1342 TGAAGAGATCGAAACAAAGC 1361
> AT3G18145.1 | Symbols: | pseudogene, similar to putative carbamoyl
phosphate synthase small subunit, blastp match of 89%
identity and 4.4e-115 P-value to GP|21535793|emb|CAC85725.1||AJ319873
putative carbamoyl phosphate synthase small subunit
{Nicotiana tabacum} | chr3:6214980-6217276 FORWARD LENGTH=2297
Length=2297
Score = 484 bits (262), Expect = 7e-136
Identities = 288/301 (96%), Gaps = 0/301 (0%)
Strand=Plus/Plus
Query 786 GGCATCATACGGCTGTGAAATCACGGTTGTCCCATCAACATGGCCAGCTGCAGAGGCACT 845
|||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 1405 GGCATCATACGGTTGTGAAATCACAGTTGTCCCATCGACATGGCCAGCTGCAGAGGCGCT 1464
Query 846 TGAAATGAATCCAGATGGAATTCTTTTCAGCAACGGTCCAGGAGATCCTTCTGCAGTGCC 905
| ||||||| ||||| || ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1465 TAAAATGAAACCAGACGGGATTCTATTCAGCAACGGTCCAGGAGATCCTTCTGCAGTGCC 1524
Query 906 TTATGCAGTTGAAACGGTTAAAGAGCTTCTAGGAAAAGTTCCTGTCTATGGAATCTGTAT 965
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1525 TTATGCAGTTGAGACGGTTAAAGAGCTTCTAGGAAAAGTTCCTGTCTATGGAATCTGTAT 1584
Query 966 GGGTCATCAGTTACTTGGACAAGCTCTTGGAGGTAAAACCTATAAGATGAAGTTTGGTCA 1025
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||
Sbjct 1585 GGGTCATCAGTTACTTGGACAAGCTCTTGGAGGTAAAACCTTTAAGATGAAATTTGGTCA 1644
Query 1026 TCATGGAGGAAACCATCCAGTTTGTAACAACAGAACCGGCCATGTCGAGATCAGTGCTCA 1085
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1645 TCATGGAGGAAACCATCCAGTTCGTAACAACAGAACCGGCCATGTCGAGATCAGTGCTCA 1704
Query 1086 G 1086
|
Sbjct 1705 G 1705
Score = 252 bits (136), Expect = 7e-66
Identities = 156/166 (94%), Gaps = 0/166 (0%)
Strand=Plus/Plus
Query 1087 AACCATAACTATGCAGTAGACCCAGCTTCTCTCCCCTCCGGTGTCGAAGTGACTCATGTC 1146
||||||||||||||||| |||||||||||||| ||| |||| || ||||||||||| |||
Sbjct 1977 AACCATAACTATGCAGTGGACCCAGCTTCTCTTCCCACCGGCGTGGAAGTGACTCACGTC 2036
Query 1147 AATCTCAACGATGGAAGTTGCGCTGGTCTCTCTTTTCCGGCAATGAATGTCATGTCTCTT 1206
||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 2037 AATCTCAACGACGGAAGTTGCGCCGGTCTCTCTTTTCCGGCAATGCATGTCATGTCTCTT 2096
Query 1207 CAGTATCACCCTGAGGCTTCTCCTGGACCTCATGACTCCGATAACG 1252
||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2097 CAGTATCACCCTGAGGCTTCTCCTGGACCTCATGACTCCGACAACG 2142
Score = 230 bits (124), Expect = 3e-59
Identities = 128/130 (98%), Gaps = 0/130 (0%)
Strand=Plus/Plus
Query 497 ATGATCTTGACACACGGGCAATAACCCGTCGATTAAGAGAAAGCGGCAGTCTTAACGGTG 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 ATGATCTTGACACACGGGCAATAACCCGTCGATTAAGAGAAAGCGGCAGTCTTAACGGTG 933
Query 557 TGCTTAGCACTGATGGATCTAAAACCGACGAGGAACTTTTGCATATGTCCCGCTCTTGGG 616
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 934 TGCTTAGCACTGATGGATCCAAAACCGACGAGGAACTTTTGCATATGTCCCGCTCTTGGG 993
Query 617 ATATCGTAGG 626
|||| |||||
Sbjct 994 ATATAGTAGG 1003
Score = 187 bits (101), Expect = 2e-46
Identities = 109/113 (96%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 159 CTCATACAATGCTAGGCTTGTGTTAGAAGATGGCTCTGTGTGGTCGGCTAAGTCTTTTGG 218
|||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||
Sbjct 681 CTCATACAATGCTAGGCTAGTGTTAGAAGATGGCTCTGTTTGGTCAGCTAAGTCTTTTGG 740
Query 219 TGCTTCTGGAACCCGTGTTGCTGAATTGGTTTTTAACACCTCTTTGACAGGGT 271
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 741 TGCTTCTGGAACCCGTGTTGCTGAATTGGTATTTAACACCTCTTTGACAGGGT 793
Score = 185 bits (100), Expect = 8e-46
Identities = 112/118 (95%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 623 TAGGCCTTGATCTAATAAGCAATGTTTCGTGTAAATCTCCCTACGAATGGGTTGAAAAAA 682
|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct 1089 TAGGCCTTGATCTAATAAGCGATGTTTCCTGTAAATCTCCCTACGAATGGGTTGAAAAAA 1148
Query 683 CAAATCCTGAATGGGAGTTTAACACAACCTCCTCACATCACAAAGAATCCTACAGAGT 740
|||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||
Sbjct 1149 CAAATCCTGAATGGGAGTTTAAGACAACCTCCTCACGTCACAGGGAATCCTACAGAGT 1206
Score = 76.8 bits (41), Expect = 5e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Plus
Query 739 GTTATTGCATATGATTTCGGGATCAAGCAAAACATCCTAAGACG 782
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1293 GTTATTGCATATGATTTCGGGATCAAGCAAAACATTCTAAGACG 1336
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5