BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg318576

Length=276
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G45875.1 | Symbols: SCRL27 | SCR-like 27 | chr5:18608457-186...   388    1e-107
  AT1G14182.1 | Symbols: SCRL28 | Encodes a member of a family of...  63.9    7e-10 
  AT4G33465.1 | Symbols: SCRL22 | SCR-like 22 | chr4:16100758-161...  52.8    2e-06 


> AT5G45875.1 | Symbols: SCRL27 | SCR-like 27 | chr5:18608457-18608911 
REVERSE LENGTH=282
Length=282

 Score =  388 bits (210),  Expect = 1e-107
 Identities = 260/283 (92%), Gaps = 8/283 (3%)
 Strand=Plus/Plus

Query  1    ATGAAGTCTACTACTTTGTTTATGGTTTCTTGTGTTCTCATGTTTTATGTTCTTAGTCAC  60
            |||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||
Sbjct  1    ATGAAGTCTACTACCTTGTTCATGGTTTCTTGTGTTCTCATATTTTGTGTTCTTAGTCAC  60

Query  61   GTGAGAGAGGTGAAATCGGT-G-G-C----GCCGAAGAGGGTGAAGAAGGTGTGCGAAAA  113
            |||||||||||||||||||| | | |    ||| ||||| ||||||||||||||||||||
Sbjct  61   GTGAGAGAGGTGAAATCGGTGGAGACTAAGGCC-AAGAGAGTGAAGAAGGTGTGCGAAAA  119

Query  114  GTCGCAAGTATTCAAACAAAATTGTGGGTGGAACGGAAACAAGACTTGCATAAGAGGCTT  173
            | | ||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct  120  GGCACAAGTATTCGAACAAAATTGTGGGTGGGACGGAAACAAAACTTGCATAAGAGGCTT  179

Query  174  TAATAAAATTAAGGAATACCCTTTTCATTGCGAGTGTGGCATTTATGATGAACTCAATAG  233
            ||||||||| || ||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct  180  TAATAAAATCAAAGAATACCCTTTTCATTGCGAGTGTGGCATTTATGATGCACCCAATAG  239

Query  234  CAGACGTCTTTGCAAATGTAAATTTCCATATTCTCCTTGCTAA  276
            ||||||| |||||||||||||||||||||||||||||||||||
Sbjct  240  CAGACGTATTTGCAAATGTAAATTTCCATATTCTCCTTGCTAA  282


> AT1G14182.1 | Symbols: SCRL28 | Encodes a member of a family 
of small, secreted, cysteine rich proteins with sequence similarity 
to SCR (S locus cysteine-rich protein). | chr1:4849448-4849826 
REVERSE LENGTH=287
Length=287

 Score = 63.9 bits (34),  Expect = 7e-10
 Identities = 34/34 (100%), Gaps = 0/34 (0%)
 Strand=Plus/Plus

Query  11  CTACTTTGTTTATGGTTTCTTGTGTTCTCATGTT  44
           ||||||||||||||||||||||||||||||||||
Sbjct  11  CTACTTTGTTTATGGTTTCTTGTGTTCTCATGTT  44


> AT4G33465.1 | Symbols: SCRL22 | SCR-like 22 | chr4:16100758-16101231 
FORWARD LENGTH=297
Length=297

 Score = 52.8 bits (28),  Expect = 2e-06
 Identities = 28/28 (100%), Gaps = 0/28 (0%)
 Strand=Plus/Plus

Query  9   TACTACTTTGTTTATGGTTTCTTGTGTT  36
           ||||||||||||||||||||||||||||
Sbjct  15  TACTACTTTGTTTATGGTTTCTTGTGTT  42



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 12667472748


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5