BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318576 Length=276 Score E Sequences producing significant alignments: (Bits) Value AT5G45875.1 | Symbols: SCRL27 | SCR-like 27 | chr5:18608457-186... 388 1e-107 AT1G14182.1 | Symbols: SCRL28 | Encodes a member of a family of... 63.9 7e-10 AT4G33465.1 | Symbols: SCRL22 | SCR-like 22 | chr4:16100758-161... 52.8 2e-06 > AT5G45875.1 | Symbols: SCRL27 | SCR-like 27 | chr5:18608457-18608911 REVERSE LENGTH=282 Length=282 Score = 388 bits (210), Expect = 1e-107 Identities = 260/283 (92%), Gaps = 8/283 (3%) Strand=Plus/Plus Query 1 ATGAAGTCTACTACTTTGTTTATGGTTTCTTGTGTTCTCATGTTTTATGTTCTTAGTCAC 60 |||||||||||||| ||||| |||||||||||||||||||| |||| ||||||||||||| Sbjct 1 ATGAAGTCTACTACCTTGTTCATGGTTTCTTGTGTTCTCATATTTTGTGTTCTTAGTCAC 60 Query 61 GTGAGAGAGGTGAAATCGGT-G-G-C----GCCGAAGAGGGTGAAGAAGGTGTGCGAAAA 113 |||||||||||||||||||| | | | ||| ||||| |||||||||||||||||||| Sbjct 61 GTGAGAGAGGTGAAATCGGTGGAGACTAAGGCC-AAGAGAGTGAAGAAGGTGTGCGAAAA 119 Query 114 GTCGCAAGTATTCAAACAAAATTGTGGGTGGAACGGAAACAAGACTTGCATAAGAGGCTT 173 | | ||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||| Sbjct 120 GGCACAAGTATTCGAACAAAATTGTGGGTGGGACGGAAACAAAACTTGCATAAGAGGCTT 179 Query 174 TAATAAAATTAAGGAATACCCTTTTCATTGCGAGTGTGGCATTTATGATGAACTCAATAG 233 ||||||||| || ||||||||||||||||||||||||||||||||||||| || |||||| Sbjct 180 TAATAAAATCAAAGAATACCCTTTTCATTGCGAGTGTGGCATTTATGATGCACCCAATAG 239 Query 234 CAGACGTCTTTGCAAATGTAAATTTCCATATTCTCCTTGCTAA 276 ||||||| ||||||||||||||||||||||||||||||||||| Sbjct 240 CAGACGTATTTGCAAATGTAAATTTCCATATTCTCCTTGCTAA 282 > AT1G14182.1 | Symbols: SCRL28 | Encodes a member of a family of small, secreted, cysteine rich proteins with sequence similarity to SCR (S locus cysteine-rich protein). | chr1:4849448-4849826 REVERSE LENGTH=287 Length=287 Score = 63.9 bits (34), Expect = 7e-10 Identities = 34/34 (100%), Gaps = 0/34 (0%) Strand=Plus/Plus Query 11 CTACTTTGTTTATGGTTTCTTGTGTTCTCATGTT 44 |||||||||||||||||||||||||||||||||| Sbjct 11 CTACTTTGTTTATGGTTTCTTGTGTTCTCATGTT 44 > AT4G33465.1 | Symbols: SCRL22 | SCR-like 22 | chr4:16100758-16101231 FORWARD LENGTH=297 Length=297 Score = 52.8 bits (28), Expect = 2e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 9 TACTACTTTGTTTATGGTTTCTTGTGTT 36 |||||||||||||||||||||||||||| Sbjct 15 TACTACTTTGTTTATGGTTTCTTGTGTT 42 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 12667472748 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5