BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318595
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT4G09870.1 | Symbols: | F-box and associated interaction doma... 713 0.0
AT2G07140.1 | Symbols: | F-box and associated interaction doma... 145 1e-33
AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:65... 121 2e-26
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 100 2e-20
AT3G13820.1 | Symbols: | F-box and associated interaction doma... 52.8 6e-06
> AT4G09870.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:6200089-6201215 FORWARD LENGTH=1014
Length=1014
Score = 713 bits (386), Expect = 0.0
Identities = 834/1036 (81%), Gaps = 87/1036 (8%)
Strand=Plus/Plus
Query 13 CTTTCGCAGGATTTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAAACGA 72
||||| || || ||||||||||||||||||||||||||||| || | ||| || ||| |
Sbjct 16 CTTTCACAAGACTTGTTAGAGGAGATACTCTGTCGCGTTCCTGCCATATCCCT-AAAAAA 74
Query 73 -TTACGATCTACTTGCAAGCGATGGAACAGTTTATTCAACGACAAGA-GG---GG--TGA 125
||||||||||||||||||| ||||||||||||||||| |||||||| || || |||
Sbjct 75 GTTACGATCTACTTGCAAGCTATGGAACAGTTTATTCATCGACAAGAGGGTTAGGAATGA 134
Query 126 ACTTAGGCGAGTCAGTATATCTCAAGTCTTTCACTGTGATGGCTTATTGATATACATCAA 185
|||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 135 ACTTAGGCGAGTCACTGTATCTCAAGTCTTTCACTGTGATGGCTTATTGTTATACATCAA 194
Query 186 CAAAGGAGACACTATGATGGTGGTTTGGAACCCGTTTATGGGTA-AAATC-AGGTGG-TC 242
| || ||||||||| ||||| ||||||||||| |||||||| | ||| | |||||| ||
Sbjct 195 CGGAGTAGACACTATAATGGTTGTTTGGAACCCATTTATGGG-ACAAA-CGAGGTGGGTC 252
Query 243 CCAACACATAGATCGTGACAAGACACACTACGACTATGTTCTTGGATCCTACCAAGACGA 302
| ||| ||||| ||||||| |||| || || | |||||||||||||||||||||||| |
Sbjct 253 C-AACCCATAGCTCGTGACCAGACCCA-TAA-A-TATGTTCTTGGATCCTACCAAGAC-A 307
Query 303 TAAA-TCAGGCAATA-CTAGCTACAAAGTTTTGAGATACA--T----GTTTTGGGGCAGC 354
|||| || ||| || ||||||| ||| | ||||||||| | ||| || ||||||
Sbjct 308 TAAAATCCCGCA-TAACTAGCTATAAAATACTGAGATACAGATACACGTTATGTGGCAGC 366
Query 355 aaaaaaa-aTTTAGAAATTTGTGAG-TTGTACTCTAGTTCTTGGAGGATTCTTGATGTCA 412
||| | ||| |||||||||||| || |||||||||||||||||| |||||||| |||
Sbjct 367 AAACTAGCATTC-GAAATTTGTGAGCTT-TACTCTAGTTCTTGGAGGGTTCTTGATATCA 424
Query 413 CTACGGACTGC-A-CGTTTTATGC-TGAGTCGACCCGCGCGTCTCTGAAAGGTAAGACTT 469
||| ||||| | | | ||| || | | | || | ||| |||| |||| ||||||||||
Sbjct 425 CTATGGACTTCGATC-TTT-AT-CATAATTC--CT-GCGTGTCTTTGAAGGGTAAGACTT 478
Query 470 ACTGGTTTGCTTTTGATGAAAAAGACTGGCAGATCTATATGGTTAGTTTTGATTATACAA 529
||||| | |||| ||| |||||||| || || || ||||| |||||||||||||| |||
Sbjct 479 ACTGGCTCACTTTCGATAAAAAAGACCGGGAGCTCGATATGTTTAGTTTTGATTATGCAA 538
Query 530 CAGAGAGATTTGGAAGTCGTATGAGTCTTCCCTATCAGTTTCCTAT-TGGTAGTTATAAA 588
||||||| ||||||| ||||||| |||||||||||||||||||| || ||||||| ||
Sbjct 539 CAGAGAGTTTTGGAAATCGTATGCCTCTTCCCTATCAGTTTCCTAGATG-TAGTTATGAA 597
Query 589 ACTGTAGCTCTATCTTGT-GTTAGAGAAGAGAAACTTTCAGTGCTATTACATCTCAGAGA 647
||||| |||||||| || ||| ||||||||||||| || || ||||||| |||||||
Sbjct 598 ACTGTGGCTCTATCC-GTTGTTCGAGAAGAGAAACTATCCGTATTATTACAGCTCAGAGG 656
Query 648 TACATCAAGGAAAGAGATATGGGTAACAAATAAGATTGATGAGACAACTCAAGTCTTGTC 707
||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||||||
Sbjct 657 TACATCAAGGAAAGAAATATGGGTAACAAATAAGATTAATGAGACCACTCAAGTCTTGTC 716
Query 708 GTGGAACAAGGTCTTAACTCTGGATTACCCTGATCTTGGTCGTTGTTTCCTAACTGGTCT 767
||||| |||||| ||||| |||||| | ||||| ||||| ||| || |||| ||
Sbjct 717 GTGGAGCAAGGTGTTAACGCTGGATAATTCTGATTTTGGTTATTG---CC---CTGGACT 770
Query 768 AAGTTTTTT-GTTCGACGAGGAGAATAGAAA-AA-TCGTGTGTTGTGAGAGA---CGTAT 821
||||||||| || |||||||||||| |||| || || |||||| ||||| | ||| |
Sbjct 771 AAGTTTTTTTGT-CGACGAGGAGAA--GAAACAAGTCTTGTGTTTTGAGAAATGTCGTGT 827
Query 822 GT-C----TG-A-A-----GACGAGGCCGCCGA---CTGGGTTTACATTGTTGAGGAGGA 866
|| | | | | || |||| | ||| | || || | ||||| ||||||
Sbjct 828 GTTCCACATCCACACCAATGATGAGGTCTTCGAAAACAAAGTATATACTGTTGGGGAGGA 887
Query 867 TAATAAAGTCACACAACTGTGTTTTGGAA-AATGTAACGACTTTGATACGTTGGAGTCGG 925
||||||||||||||||||| |||||| || ||| | | | | | | | | | ||
Sbjct 888 TAATAAAGTCACACAACTGCGTTTTG-AACAATCTTTC---T--G-TCC-TAAAA-T-GG 937
Query 926 ATCCATATCTGTTTGGTTATGTGCCAAGTTTGGTTCAAATCGAGCATCCTCGACACAAAA 985
|||||||| ||||||||||||| |||||||||||||||||||| || ||||||| ||||
Sbjct 938 ATCCATATGTGTTTGGTTATGTTCCAAGTTTGGTTCAAATCGAACAACCTCGACGCAAA- 996
Query 986 C-TAAAAGAGGTGACT 1000
| ||||||||||||||
Sbjct 997 CGTAAAAGAGGTGACT 1012
> AT2G07140.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:2957561-2959851 FORWARD LENGTH=1329
Length=1329
Score = 145 bits (78), Expect = 1e-33
Identities = 106/119 (89%), Gaps = 3/119 (3%)
Strand=Plus/Plus
Query 173 TGATATACATCAACAAAGGAGACACTATGATGGTGGTTTGGAACCCGTTTATGGGTAAAA 232
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1121 TGATATACATCAACAAAGGAGACACTATAATGGTGGTTTGGAACCCGTTTATGGGTCAAA 1180
Query 233 TCAGGTGG-TCCCAACACATAGATCGTGACAAGACACACTACGACTATGTTCTTGGATC 290
||||||| ||| |||| ||||||| |||||| |||| |||| |||||| || || |||
Sbjct 1181 CCAGGTGGATCC-AACATATAGATCTTGACAATACACGCTACAACTATGATCATG-ATC 1237
> AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:6521719-6523043
FORWARD LENGTH=1325
Length=1325
Score = 121 bits (65), Expect = 2e-26
Identities = 80/87 (92%), Gaps = 2/87 (2%)
Strand=Plus/Plus
Query 25 TTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAAACGATTACGATCTACT 84
||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 75 TTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGACGTTTACGATCGACT 134
Query 85 TGCAA-GCGATGGAACAGTTTATTCAA 110
||||| || ||||||| ||||||||||
Sbjct 135 TGCAAAGC-ATGGAACCGTTTATTCAA 160
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 100 bits (54), Expect = 2e-20
Identities = 78/90 (87%), Gaps = 0/90 (0%)
Strand=Plus/Plus
Query 21 GGATTTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAAACGATTACGATC 80
||||||| |||| || ||||||| | ||| |||| |||||||||||||||||||||||
Sbjct 18 GGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCTCTGAAACGATTACGATC 77
Query 81 TACTTGCAAGCGATGGAACAGTTTATTCAA 110
||||||||| | |||||||| |||||||||
Sbjct 78 TACTTGCAAACAATGGAACACTTTATTCAA 107
> AT3G13820.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:4549616-4550863 FORWARD LENGTH=1248
Length=1248
Score = 52.8 bits (28), Expect = 6e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 515 GTTTTGATTATACAACAGAGAGATTTGG 542
||||||||||||||||||||||||||||
Sbjct 719 GTTTTGATTATACAACAGAGAGATTTGG 746
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5