BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318595 Length=1002 Score E Sequences producing significant alignments: (Bits) Value AT4G09870.1 | Symbols: | F-box and associated interaction doma... 713 0.0 AT2G07140.1 | Symbols: | F-box and associated interaction doma... 145 1e-33 AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:65... 121 2e-26 AT3G22350.1 | Symbols: | F-box and associated interaction doma... 100 2e-20 AT3G13820.1 | Symbols: | F-box and associated interaction doma... 52.8 6e-06 > AT4G09870.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:6200089-6201215 FORWARD LENGTH=1014 Length=1014 Score = 713 bits (386), Expect = 0.0 Identities = 834/1036 (81%), Gaps = 87/1036 (8%) Strand=Plus/Plus Query 13 CTTTCGCAGGATTTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAAACGA 72 ||||| || || ||||||||||||||||||||||||||||| || | ||| || ||| | Sbjct 16 CTTTCACAAGACTTGTTAGAGGAGATACTCTGTCGCGTTCCTGCCATATCCCT-AAAAAA 74 Query 73 -TTACGATCTACTTGCAAGCGATGGAACAGTTTATTCAACGACAAGA-GG---GG--TGA 125 ||||||||||||||||||| ||||||||||||||||| |||||||| || || ||| Sbjct 75 GTTACGATCTACTTGCAAGCTATGGAACAGTTTATTCATCGACAAGAGGGTTAGGAATGA 134 Query 126 ACTTAGGCGAGTCAGTATATCTCAAGTCTTTCACTGTGATGGCTTATTGATATACATCAA 185 |||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||| Sbjct 135 ACTTAGGCGAGTCACTGTATCTCAAGTCTTTCACTGTGATGGCTTATTGTTATACATCAA 194 Query 186 CAAAGGAGACACTATGATGGTGGTTTGGAACCCGTTTATGGGTA-AAATC-AGGTGG-TC 242 | || ||||||||| ||||| ||||||||||| |||||||| | ||| | |||||| || Sbjct 195 CGGAGTAGACACTATAATGGTTGTTTGGAACCCATTTATGGG-ACAAA-CGAGGTGGGTC 252 Query 243 CCAACACATAGATCGTGACAAGACACACTACGACTATGTTCTTGGATCCTACCAAGACGA 302 | ||| ||||| ||||||| |||| || || | |||||||||||||||||||||||| | Sbjct 253 C-AACCCATAGCTCGTGACCAGACCCA-TAA-A-TATGTTCTTGGATCCTACCAAGAC-A 307 Query 303 TAAA-TCAGGCAATA-CTAGCTACAAAGTTTTGAGATACA--T----GTTTTGGGGCAGC 354 |||| || ||| || ||||||| ||| | ||||||||| | ||| || |||||| Sbjct 308 TAAAATCCCGCA-TAACTAGCTATAAAATACTGAGATACAGATACACGTTATGTGGCAGC 366 Query 355 aaaaaaa-aTTTAGAAATTTGTGAG-TTGTACTCTAGTTCTTGGAGGATTCTTGATGTCA 412 ||| | ||| |||||||||||| || |||||||||||||||||| |||||||| ||| Sbjct 367 AAACTAGCATTC-GAAATTTGTGAGCTT-TACTCTAGTTCTTGGAGGGTTCTTGATATCA 424 Query 413 CTACGGACTGC-A-CGTTTTATGC-TGAGTCGACCCGCGCGTCTCTGAAAGGTAAGACTT 469 ||| ||||| | | | ||| || | | | || | ||| |||| |||| |||||||||| Sbjct 425 CTATGGACTTCGATC-TTT-AT-CATAATTC--CT-GCGTGTCTTTGAAGGGTAAGACTT 478 Query 470 ACTGGTTTGCTTTTGATGAAAAAGACTGGCAGATCTATATGGTTAGTTTTGATTATACAA 529 ||||| | |||| ||| |||||||| || || || ||||| |||||||||||||| ||| Sbjct 479 ACTGGCTCACTTTCGATAAAAAAGACCGGGAGCTCGATATGTTTAGTTTTGATTATGCAA 538 Query 530 CAGAGAGATTTGGAAGTCGTATGAGTCTTCCCTATCAGTTTCCTAT-TGGTAGTTATAAA 588 ||||||| ||||||| ||||||| |||||||||||||||||||| || ||||||| || Sbjct 539 CAGAGAGTTTTGGAAATCGTATGCCTCTTCCCTATCAGTTTCCTAGATG-TAGTTATGAA 597 Query 589 ACTGTAGCTCTATCTTGT-GTTAGAGAAGAGAAACTTTCAGTGCTATTACATCTCAGAGA 647 ||||| |||||||| || ||| ||||||||||||| || || ||||||| ||||||| Sbjct 598 ACTGTGGCTCTATCC-GTTGTTCGAGAAGAGAAACTATCCGTATTATTACAGCTCAGAGG 656 Query 648 TACATCAAGGAAAGAGATATGGGTAACAAATAAGATTGATGAGACAACTCAAGTCTTGTC 707 ||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| Sbjct 657 TACATCAAGGAAAGAAATATGGGTAACAAATAAGATTAATGAGACCACTCAAGTCTTGTC 716 Query 708 GTGGAACAAGGTCTTAACTCTGGATTACCCTGATCTTGGTCGTTGTTTCCTAACTGGTCT 767 ||||| |||||| ||||| |||||| | ||||| ||||| ||| || |||| || Sbjct 717 GTGGAGCAAGGTGTTAACGCTGGATAATTCTGATTTTGGTTATTG---CC---CTGGACT 770 Query 768 AAGTTTTTT-GTTCGACGAGGAGAATAGAAA-AA-TCGTGTGTTGTGAGAGA---CGTAT 821 ||||||||| || |||||||||||| |||| || || |||||| ||||| | ||| | Sbjct 771 AAGTTTTTTTGT-CGACGAGGAGAA--GAAACAAGTCTTGTGTTTTGAGAAATGTCGTGT 827 Query 822 GT-C----TG-A-A-----GACGAGGCCGCCGA---CTGGGTTTACATTGTTGAGGAGGA 866 || | | | | || |||| | ||| | || || | ||||| |||||| Sbjct 828 GTTCCACATCCACACCAATGATGAGGTCTTCGAAAACAAAGTATATACTGTTGGGGAGGA 887 Query 867 TAATAAAGTCACACAACTGTGTTTTGGAA-AATGTAACGACTTTGATACGTTGGAGTCGG 925 ||||||||||||||||||| |||||| || ||| | | | | | | | | | || Sbjct 888 TAATAAAGTCACACAACTGCGTTTTG-AACAATCTTTC---T--G-TCC-TAAAA-T-GG 937 Query 926 ATCCATATCTGTTTGGTTATGTGCCAAGTTTGGTTCAAATCGAGCATCCTCGACACAAAA 985 |||||||| ||||||||||||| |||||||||||||||||||| || ||||||| |||| Sbjct 938 ATCCATATGTGTTTGGTTATGTTCCAAGTTTGGTTCAAATCGAACAACCTCGACGCAAA- 996 Query 986 C-TAAAAGAGGTGACT 1000 | |||||||||||||| Sbjct 997 CGTAAAAGAGGTGACT 1012 > AT2G07140.1 | Symbols: | F-box and associated interaction domains-containing protein | chr2:2957561-2959851 FORWARD LENGTH=1329 Length=1329 Score = 145 bits (78), Expect = 1e-33 Identities = 106/119 (89%), Gaps = 3/119 (3%) Strand=Plus/Plus Query 173 TGATATACATCAACAAAGGAGACACTATGATGGTGGTTTGGAACCCGTTTATGGGTAAAA 232 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| Sbjct 1121 TGATATACATCAACAAAGGAGACACTATAATGGTGGTTTGGAACCCGTTTATGGGTCAAA 1180 Query 233 TCAGGTGG-TCCCAACACATAGATCGTGACAAGACACACTACGACTATGTTCTTGGATC 290 ||||||| ||| |||| ||||||| |||||| |||| |||| |||||| || || ||| Sbjct 1181 CCAGGTGGATCC-AACATATAGATCTTGACAATACACGCTACAACTATGATCATG-ATC 1237 > AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:6521719-6523043 FORWARD LENGTH=1325 Length=1325 Score = 121 bits (65), Expect = 2e-26 Identities = 80/87 (92%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 25 TTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAAACGATTACGATCTACT 84 ||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||| Sbjct 75 TTGGTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAGACGTTTACGATCGACT 134 Query 85 TGCAA-GCGATGGAACAGTTTATTCAA 110 ||||| || ||||||| |||||||||| Sbjct 135 TGCAAAGC-ATGGAACCGTTTATTCAA 160 > AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:7901905-7903041 FORWARD LENGTH=1137 Length=1137 Score = 100 bits (54), Expect = 2e-20 Identities = 78/90 (87%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 21 GGATTTGTTAGAGGAGATACTCTGTCGCGTTCCGGCAACATCTCTGAAACGATTACGATC 80 ||||||| |||| || ||||||| | ||| |||| ||||||||||||||||||||||| Sbjct 18 GGATTTGGTAGAAGAAATACTCTCAAGGGTTTCGGCCACATCTCTGAAACGATTACGATC 77 Query 81 TACTTGCAAGCGATGGAACAGTTTATTCAA 110 ||||||||| | |||||||| ||||||||| Sbjct 78 TACTTGCAAACAATGGAACACTTTATTCAA 107 > AT3G13820.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:4549616-4550863 FORWARD LENGTH=1248 Length=1248 Score = 52.8 bits (28), Expect = 6e-06 Identities = 28/28 (100%), Gaps = 0/28 (0%) Strand=Plus/Plus Query 515 GTTTTGATTATACAACAGAGAGATTTGG 542 |||||||||||||||||||||||||||| Sbjct 719 GTTTTGATTATACAACAGAGAGATTTGG 746 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49078761619 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5