BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318610
Length=2118
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18480.1 | Symbols: AtCASP, CASP | CCAAT-displacement protei... 1766 0.0
> AT3G18480.1 | Symbols: AtCASP, CASP | CCAAT-displacement protein
alternatively spliced product | chr3:6336736-6341788 FORWARD
LENGTH=2450
Length=2450
Score = 1766 bits (956), Expect = 0.0
Identities = 994/1013 (98%), Gaps = 0/1013 (0%)
Strand=Plus/Plus
Query 1106 AGGATACTGTCATTGAAGAGATGAAGAAAGAGCTTCAAGAACGACCATCAGCAAAATTAG 1165
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1246 AGGATACTATCATTGAAGAGATGAAGAAAGAGCTTCAAGAAAGACCATCAGCAAAATTAG 1305
Query 1166 TTGATGATCTGCGCAAAAAAGTGAAAATTCTGCAGGCTGTAGGTTACAATTCAATTGAGG 1225
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 TTGATGATTTGCGCAAAAAAGTGAAAATTCTGCAGGCTGTAGGTTACAATTCAATTGAGG 1365
Query 1226 CTGAAGACTGGGATGCTGCTACCACTGGTGAAGAGATGAGCAAAATGGAGTCGCTTCTTC 1285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1366 CTGAAGACTGGGATGCTGCTACCACTGGTGAAGAGATGAGCAAAATGGAGTCGCTTCTTC 1425
Query 1286 TTGATAAAAACAGAAAAATGGAACATGAGGTCACTCAGTTAAAGGTTCAACTTTCTGAGA 1345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1426 TTGATAAAAACAGAAAAATGGAACATGAGGTCACTCAGTTAAAGGTTCAACTTTCTGAGA 1485
Query 1346 AAACTTCCTTGCTTGAGAAGGCTGAAGCCAAGGGAGAAGAACTGACAGCTAAGGTTAATG 1405
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1486 AAGCTTCCTTGCTTGAGAAGGCTGAAGCCAAGGGAGAAGAACTGACAGCTAAGGTTAATG 1545
Query 1406 AACAACAAAGACTGATACAAAAGTTGGAGGATGATATTTTGAAGGGTTACAGTTCAAAAG 1465
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1546 AACAACAAAGACTGATACAAAAGTTGGAGGATGATATTTTGAAGGGTTACGGTTCAAAAG 1605
Query 1466 AGCGAAAAGGTGCTCTATTTGATGAGTGGGAGTTCTCAGAAGCAGGTGTGGCTGAGCAGT 1525
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1606 AGCGAAAAGGTGCTCTATTTGATGAATGGGAGTTCTCAGAAGCAGGTGTGGCTGAGCAGT 1665
Query 1526 CTGAGCCTATGGATCAGAAACATGTTCCATCAGATCAAGATCAAAGCTCAATGCTAAAAG 1585
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1666 CTGAGCCTATGGATCAGAAACATGTTCCATCAGAGCAAGATCAAAGCTCAATGCTAAAAG 1725
Query 1586 TCATCTGCAGCCAAAGAGATCGGTTCCGAGCACGATTACGGGAAACAGAAGAGGAAATAA 1645
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1726 TTATCTGCAGCCAAAGAGATCGGTTCCGAGCACGATTACGGGAAACAGAAGAGGAAATAA 1785
Query 1646 GGCGATTAAAAGAGAAGATAGGATTTCTCACAGACGAATTGGAGAAGACCAAAGCTGACA 1705
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1786 GGCGATTAAAAGAGAAGATAGGTTTTCTCACAGACGAATTGGAGAAGACCAAAGCAGACA 1845
Query 1706 ACGTCAAACTCTATGGGAAAATCCGTTATGTCCAAGACTATAACCACGATAAAGTTGTTT 1765
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1846 ACGTCAAACTCTATGGGAAAATCCGTTATGTCCAAGACTATAACCATGATAAAGTTGTTT 1905
Query 1766 CCCGAGGATCGAAAAAGTATGTGGAAGATCTTGAAAGTGGATTCAGCTCGGATGTCGAAT 1825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1906 CCCGAGGATCGAAAAAGTATGTGGAAGATCTTGAAAGTGGATTCAGCTCGGATGTCGAAT 1965
Query 1826 CAAAATACAAGAAAATTTACGAAGATGACATTAACCCTTTTGCAGCATTCTCAAAAAAGG 1885
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1966 CAAAATACAAGAAAATTTACGAAGATGACATCAACCCTTTTGCAGCATTCTCGAAAAAGG 2025
Query 1886 AAAGAGAGCAACGGATCAAAGATTTGGGAATCAGAGATCGGATTACGCTAAGCAGTGGTC 1945
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2026 AAAGAGAGCAACGGATCAAAGATTTGGGAATCAGAGATCGGATTACGCTAAGCAGTGGGC 2085
Query 1946 GCTTCCTTCTAGGAAACAAATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGC 2005
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2086 GGTTCCTTCTAGGAAACAAATACGCAAGGACATTTGCTTTCTTCTACACAATAGGATTGC 2145
Query 2006 ACGTACTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGCTATCTCAGCCATGGAG 2065
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2146 ACGTCCTTGTCTTCACTTGTCTCTACCGTATGTCTGCTTACAGTTATCTCAGCCATGGAG 2205
Query 2066 CAGAGGAGACTCTGATGACAGAAGCAACCACAAACCTCCCTCACGGTCTTTAA 2118
||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 2206 CAGAGGAGACTCTAATGACAGAAGCAACCACAAACCTTCCTCACGGTCTTTAA 2258
Score = 1753 bits (949), Expect = 0.0
Identities = 1023/1059 (97%), Gaps = 3/1059 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTTTTGCAAGATGGATCGGAGAGAGATAAAACTCCTCCTCCTT-C-C-TCTTCG 57
|||||||||| ||||||||||||||| |||||||||||||||||||||| | | |||||
Sbjct 189 ATGGAGGTTTCGCAAGATGGATCGGAAAGAGATAAAACTCCTCCTCCTTCCTCTTCTTCT 248
Query 58 TCTTCTTCGTCTCCCATTCCTGTCGTCACCAATTTTTGGAAAGAATTTGATTTGGAGAAG 117
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 249 TCTTCTTCCTCTCCCATTCCTGTCGTCACCAATTTCTGGAAAGAATTTGATTTGGAGAAG 308
Query 118 GAGAAAAGCCTGCTTGACGAGCAAGGGCTTAGAATAGCTGAAAATCAAGAAAACAGCCAA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 GAGAAAAGCCTGCTTGACGAGCAAGGGCTTAGAATAGCTGAAAATCAAGAAAACAGCCAA 368
Query 178 AAGAATCGGCGGAAGCTTGCAGAGAGCACTCGAGACTTCAAGAAAGCTTCCCCTGAGGAC 237
|||||||| || ||||||||||||||||| |||||||||||||||||||| |||||| ||
Sbjct 369 AAGAATCGCCGAAAGCTTGCAGAGAGCACACGAGACTTCAAGAAAGCTTCGCCTGAGAAC 428
Query 238 AAACTTAGTATGTTTAATTCCCTCCTCAAGGGATATCAAGAAGAAGTAGATAATATTACC 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AAACTTAGTATGTTTAATTCCCTCCTCAAGGGATATCAAGAAGAAGTAGATAATATTACC 488
Query 298 AAGAGGGCCAAGTTTGGGGAGAATGCTTTCCTAAATATCTATCAGAAACTCTATGAAGCA 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 AAGAGGGCCAAGTTTGGGGAGAATGCTTTCCTAAATATCTATCAGAAACTCTATGAAGCA 548
Query 358 CCAGATCCATTTCCTGCTCTTGCTTCTATTGCTGAGCAAGATCGTAAATTATCTGAAGTG 417
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 549 CCTGATCCGTTTCCTGCTCTTGCTTCTATTGCTGAGCAAGATCGTAAATTATCTGAAGTG 608
Query 418 GAATCTGAGAATCGAAAAATGAAAGTTGAACTTGAGGAATTTAGGACAGAAGCCACTCAT 477
|||||||| |||||||| |||||||||||||||||||| |||||||||||||| ||||||
Sbjct 609 GAATCTGAAAATCGAAAGATGAAAGTTGAACTTGAGGAGTTTAGGACAGAAGCGACTCAT 668
Query 478 CTGAAAAATCAGCAGGCCACAATAAGAAGGCTAGAAGAACGGAACCGCCAGCTTGAGCAA 537
|| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 669 CTTAAAAATCAGCAGGCCACAATAAGAAGGCTTGAAGAACGGAACCGCCAGCTTGAGCAA 728
Query 538 CAGATGGAAGAAAAAATCAAAGAAGTTGTTGAGATCAAGCAACGAAATCTGGCTGAGGAA 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 729 CAGATGGAAGAAAAAATCAAAGAAGTTGTTGAGATCAAGCAACGAAATCTGGCTGAGGAA 788
Query 598 AACCAGAAAACGATGGAGCTTTTAAAGGATAGGGAGCAAGCTTTGCAAGATCAGTTAAGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 789 AACCAGAAAACGATGGAGCTTTTAAAGGATAGGGAGCAAGCTTTGCAAGATCAGTTAAGG 848
Query 658 CAAGCGAAAGACAGCGTCTCCACTATGCAAAAATTGCATGAGCTAGCACAGAGCCAACTT 717
||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 849 CAAGCAAAAGACAGCGTCTCCACTATGCAAAAATTGCATGAGTTAGCACAGAACCAACTT 908
Query 718 TTTGAAATCCGTGCTCAATCAGATGAAGAGACCGCGGCGAAGCAATCTGAAGTTAGTCTA 777
|||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 909 TTTGAACTCCGTGCTCAATCAGACGAAGAGACCGCGGGGAAGCAATCTGAAGTTAGTCTA 968
Query 778 TTGATGGATGAAGTGGAGCGTGCTCAAACCCGGCTCCTTACTCTTGAGAGGGAAAAGGGA 837
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 969 TTGATGGATGAAGTGGAGCGTGCTCAGACCCGACTCCTTACTCTTGAGAGGGAAAAGGGA 1028
Query 838 CATCTGCGTTCTCAGTTGCAAACAGCTAATGAAGATACTGATAACAAGAAAAGTGATAAT 897
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 CATCTGCGTTCTCAGCTGCAAACAGCTAATGAAGATACTGATAACAAGAAAAGTGATAAT 1088
Query 898 GTTGATTCAAATAGTATGCTGGAGAACTCTTTAACTGCAAAAGAGAAGATTATTTCGGAG 957
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1089 ATTGATTCGAATAGTATGCTGGAGAACTCGTTAACTGCAAAAGAGAAGATTATTTCGGAG 1148
Query 958 CTTAATATGGAGATTCACAATGTTGAGACAGCTTTAGCAAATGAGCGAGAAAGTCATGTT 1017
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1149 CTTAATATGGAGATTCACAATGTTGAGACAGCTTTAGCTAATGAGCGAGAAAGTCATGTT 1208
Query 1018 GCTGAAATAAAGAAATTGAATTCTTTGCTCAATAAAAAG 1056
|| || |||||||||||||||||||||||||||||||||
Sbjct 1209 GCCGAGATAAAGAAATTGAATTCTTTGCTCAATAAAAAG 1247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105019540140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5