BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318646
Length=1128
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18850.1 | Symbols: LPAT5 | lysophosphatidyl acyltransferase... 1857 0.0
> AT3G18850.1 | Symbols: LPAT5 | lysophosphatidyl acyltransferase
5 | chr3:6499415-6501359 REVERSE LENGTH=1430
Length=1430
Score = 1857 bits (1005), Expect = 0.0
Identities = 1088/1129 (96%), Gaps = 2/1129 (0%)
Strand=Plus/Plus
Query 1 ATGGAAAAGAAGAGCGTA-AAAATTTCTGATAAGTTGTCTCTGATTAGAGTGTTAAGAGG 59
|||||||| ||||| ||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 189 ATGGAAAAAAAGAGTGTACCAAA-TTCTGATAAGTTGTCTCTGATTAGAGTGTTAAGAGG 247
Query 60 TATAATATGTCTGATGGTGTTAGTTTCAACAGCTTTTATGATGTTAATATTCTGGGGGTT 119
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 248 TATAATATGTCTGATGGTGTTAGTTTCAACAGCTTTTATGATGTTGATATTCTGGGGGTT 307
Query 120 CCTATCAGCTGTAGTTTTGAGGCTTTTCAGCGTACGCTATAGCCGTAAATGTGTTTCCTT 179
| ||||||||||||| ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 308 CTTATCAGCTGTAGTGTTGAGGCTTTTCAGCATTCGCTATAGCCGTAAATGTGTTTCCTT 367
Query 180 CTTCTTTGGTTCGTGGCTCGCCTTGTGGCCCTTCCTCTTTGAGAAGATTAACAGAACCAA 239
||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 368 CTTCTTTGGCTCGTGGCTCGCCTTGTGGCCTTTCCTCTTTGAGAAGATTAACAAAACCAA 427
Query 240 AGTTATCTTCTCTGGCGATAAGGTTCCTTGTGAGGATCGAGTATTGCTCATTGCAAACCA 299
||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 428 AGTTATCTTCTCTGGTGATAAGGTTCCTTGCGAGGATCGAGTATTGCTCATTGCAAACCA 487
Query 300 CCGAACAGAAGTTGATTGGATGTACTTCTGGGATCTTGCACTGCGTAAAGGCCAGATTGG 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 488 CCGAACAGAAGTTGATTGGATGTACTTCTGGGATCTTGCACTGCGTAAAGGCCAGATTGG 547
Query 360 GAATATAAAATATGTGCTTAAGAGTAGTTTGATGAAATTACCTCTCTTTGGTTGGGCGTT 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GAATATCAAATATGTGCTTAAGAGTAGTTTGATGAAATTACCTCTCTTTGGTTGGGCGTT 607
Query 420 TCACCTCTTTGAGTTTATTCCCGTTGAGCGGAAATGGGAAGTCGATGAAGCAAACTTGAG 479
||||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||
Sbjct 608 TCACCTCTTTGAGTTTATTCCAGTTGAGAGGAGATGGGAAGTCGATGAAGCAAACTTGAG 667
Query 480 GCAGATACTTTCGAGTTTTAAGGATCCCCGAGACGCTTTATGGCTTGCTCTTTTCCCCGA 539
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 ACAGATAGTTTCGAGTTTTAAGGATCCCCGAGACGCTTTATGGCTTGCTCTTTTCCCCGA 727
Query 540 GGGCACAGATTACACAGAGGCTAAATGCGAAAGGAGTAAGAAATTTGCTGCTGAAAATGG 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 728 GGGCACAGATTACACAGAGGCTAAATGCCAAAGGAGTAAGAAATTTGCTGCTGAAAATGG 787
Query 600 CCTTCCAATACTGAACAACGTGCTGCTTCCCAGGACAAAAGGTTTCTTCTCCTGCTTGCA 659
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 788 CCTTCCGATACTGAACAACGTGCTGCTTCCCAGGACAAAAGGTTTCGTCTCCTGCTTGCA 847
Query 660 AGAATTGAGTTGCTCACTTGATGCAGTTTATGATGTGACCATCGGTTATAAAACCCGCTG 719
|||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 848 AGAACTGAGTTGCTCACTTGACGCAGTTTATGATGTGACCATCGGTTATAAAACCCGCTG 907
Query 720 CCCATCTTTCTTAGACAATGTCTATGGAATTGAGCCATCAGAAGTTCACATTCACATCCG 779
|||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||
Sbjct 908 CCCATCTTTCTTAGACAACGTTTATGGAATTGAGCCATCAGAAGTTCACATCCACATCCG 967
Query 780 TCGTATCAACCTAACCCAAATCCCAAATCAAGAAAAGGACATCAATGCTTGGTTAATGAA 839
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TCGTATCAACCTGACCCAAATCCCAAATCAAGAAAAGGACATCAATGCTTGGTTAATGAA 1027
Query 840 CACATTCCAGCTCAAAGACCAGCTGCTCAATGACTTTTACTCCAATGGCCATTTCCCGAA 899
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1028 CACATTCCAGCTCAAAGACCAGCTGCTCAATGACTTTTACTCCAATGGTCATTTCCCTAA 1087
Query 900 CGAAGGAACAGAGAAAGAGTTCAACACAAAGAAGTACCTCATAAACTGCTTGGCAGTGAT 959
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1088 CGAAGGAACAGAGAAAGAGTTCAACACAAAGAAGTACCTCATAAACTGTTTGGCAGTGAT 1147
Query 960 TGCCTTCACCACCATCTGTACGCATCTCACCTTCTTCTCATCAATGATTTGGTTCAAGAT 1019
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 1148 TGCCTTCACCACCATCTGTACACATCTCACCTTCTTCTCATCAATGATTTGGTTCAGGAT 1207
Query 1020 TTATGTCTCTTTGGCCTGTGCCTACTTGACCTCTGCTACACATTTCAATCTTCGTTCTGT 1079
|||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1208 TTATGTCTCTTTGGCCTGTGTCTACTTGACCTCTGCTACGCATTTCAATCTTCGTTCTGT 1267
Query 1080 TCCACTTGTTGAGACTGCaaaaaaaGCCTTCAAATTACTAAACAAATAA 1128
|||||||||||||||||||||||| || |||||||| |||||||||||
Sbjct 1268 TCCACTTGTTGAGACTGCAAAAAATTCCCTCAAATTAGTAAACAAATAA 1316
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55321000590
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5