BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318651
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unkn... 2242 0.0
AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:65... 939 0.0
AT5G47300.1 | Symbols: | F-box and associated interaction doma... 95.3 2e-18
AT3G49980.1 | Symbols: | F-box and associated interaction doma... 60.2 9e-08
AT1G54550.1 | Symbols: | F-box and associated interaction doma... 58.4 3e-07
AT3G20690.1 | Symbols: | F-box and associated interaction doma... 56.5 1e-06
> AT3G18900.2 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: synergid; CONTAINS
InterPro DOMAIN/s: F-box associated domain, type 1 (InterPro:IPR006527),
F-box associated interaction domain (InterPro:IPR017451),
Protein of unknown function DUF547 (InterPro:IPR006869);
BEST Arabidopsis thaliana protein match is: Protein
of unknown function, DUF547 (TAIR:AT5G66600.3). | chr3:6517181-6521019
FORWARD LENGTH=2500
Length=2500
Score = 2242 bits (1214), Expect = 0.0
Identities = 1606/1785 (90%), Gaps = 68/1785 (4%)
Strand=Plus/Plus
Query 1 ATGACGACAAGAACATCGAAACATAAACGTTCTAGAAGCGACCCCGTCCCTAGAAAATCT 60
|||||||||||||| ||||| || ||||||||||||||||| || ||||| |||||||||
Sbjct 1 ATGACGACAAGAACTTCGAATCACAAACGTTCTAGAAGCGATCCGGTCCCAAGAAAATCT 60
Query 61 CTCAAGAACAAGAAATCAAGTGAAACCCTTTACAACATCGATCGATTTCACATGGATGAA 120
|||||||| || |||||||| || |||||| ||| | | | ||||||||||||||
Sbjct 61 CTCAAGAATAAAAAATCAAGCGAGGCCCTTT---ACA---A-C-A-TTCACATGGATGAA 111
Query 121 CATTTGCAGAGAGAGATAGAACAGCTAAAATCTCTTCTAAAGTCCAGAAAATTACAT-CC 179
| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 112 CTTTTGCAGAGAGAGATAGAACAGCTAAAATCTCTTTTAAAGTCCAGAAAATTACATCCC 171
Query 180 -----CAAGAGAGTCTCAAGTGATGAGATTGATTTGTTGCTTCAAGAAGATGAAGTCTTA 234
|| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 172 GGGGGCAGGAGAGTCTCAAGTGATGAGATTGATTTATTGCTTCAAGAAGATGAAGTCTTA 231
Query 235 GTACGGCGAGAAATGGAGACAGTCATTCGACGCAAACTGTTCTTGGAAGATTCTAAAAAT 294
|| ||||| |||||| |||||||| || ||||||||||||||||||||||||||||||||
Sbjct 232 GTTCGGCGTGAAATGAAGACAGTCCTTGGACGCAAACTGTTCTTGGAAGATTCTAAAAAT 291
Query 295 GAAGATTCTTCTATCCCCAAGGAGGCAAAGAAACTGGT-GAGGGAAATCGCGGGTTTGGA 353
|||||||||||||||||||||||||| ||||||||||| || |||||| |||||||||||
Sbjct 292 GAAGATTCTTCTATCCCCAAGGAGGCGAAGAAACTGGTGGA-GGAAATAGCGGGTTTGGA 350
Query 354 GCTGCAAGTGATGTACTTAGAAACATATCTTCTTTTGTTATATCGAAGATTCTTCAACAA 413
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 351 GCTGCAAGTGATGTACTTAGAAACATATCTTCTTTTGTTATACCGGAGATTCTTCAACAA 410
Query 414 CAAAATTACATCTGAA-TTAAAATCAGAGGGGAAAGAGATATCAGAAGCTATTCTTGGGA 472
||||||||||||| || ||| ||||||| | |||||||| |||||| | | |||||| |
Sbjct 411 CAAAATTACATCT-AAGTTAGAATCAGAAGAGAAAGAGAGATCAGAGGATCTTCTTGAGT 469
Query 473 GCACTAAAGTCACTGATTCACCCAAAAACA-CAGTCTGCAGTCCGCAGAAAGTTGTAGAA 531
| || ||| ||| ||||||| ||||||| | ||||||||| ||||||||| ||||||||
Sbjct 470 GTACCAAACTCATTGATTCA-CCAAAAAAAGGAGTCTGCAGCCCGCAGAAACTTGTAGAA 528
Query 532 GACTCTGGAATCTTCCGCAGTCACTCATCCTTGTCTCATTGTTCAGGCTATTCCTTTAGA 591
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 529 GACTCTGGAATATTCCGCAGTCACTCATCGTTGTCTCATTGTTCAGGCTATTCCTTTAGA 588
Query 592 ATGTCTCCCCAAGCAATGGACTCGTCATATCATCGATCTCTTCCTTTCTCAATGCTTGAG 651
||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 589 ATGTCTCCCCATGCAATGGACTCATCATATCATCGATCTCTTCCTTTCTCAATGCTTGAG 648
Query 652 CAATCCGATATCGATGAAATGATCGGGACATATGTTTCTGAAAACGTTCATAATTCACCA 711
||||| ||||||||||| |||| ||||||||||||||||||||||||||||| ||||||
Sbjct 649 CAATCTGATATCGATGAGTTGATTGGGACATATGTTTCTGAAAACGTTCATAAGTCACCA 708
Query 712 AATAGTTTGTCTGAAGAGATGATCAAGTGCATCTTACAAGTATTTCGTCAACTTGCT-GA 770
|||||||| |||||||||||| |||||||||||| | || ||| ||||||||||| | ||
Sbjct 709 AATAGTTTATCTGAAGAGATGGTCAAGTGCATCTCAGAATTATGTCGTCAACTTG-TGGA 767
Query 771 TCCAGAATCACTCGATGATGATCGAGAAACAAGCAGTCCTTTCCGCGGGAAAGAGCGACT 830
||||| ||||||||| |||||| |||| | ||||||||||||||||||||||||| ||
Sbjct 768 TCCAGGATCACTCGACAATGATCTAGAATCGAGCAGTCCTTTCCGCGGGAAAGAGCCTCT 827
Query 831 GAAGGTCATTTGTCGACCTTACGACAAATTATTAATGGTGAAATCGA-TATGTAGAGACC 889
|||| ||||| |||||||||||||||| ||||||||||||||||||| || ||||||||
Sbjct 828 GAAGATCATTAGTCGACCTTACGACAAGTTATTAATGGTGAAATCGATTA-GTAGAGACT 886
Query 890 CAGGGAAGTTAAATGCAGTTGAACCTGCTTTGAAACATTTCAGGTCGCTTGTTAATAAGT 949
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 887 CAGAGAAGTTAAATGCAGTTGAACCTGCTTTGAAACATTTCAGGTCGCTTGTTAATAAGT 946
Query 950 TAGAAGGAGTGAATCCAAGGAAGTTAAATCATGAAGAAAAGCTAGCTTTCTGGATTAACA 1009
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 947 TAGAAGGAGTGAATCCAAGGAAGTTAAATCATGAAGAAAAGCTAGCTTTCTGGATTAATA 1006
Query 1010 TACACAACTCTCTGGTTATGCATTCGATAATTGTCTATGGGAACCCTAAAAACAGTATGA 1069
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1007 TACACAACTCTCTGGTTATGCATTCGATACTTGTCTATGGGAACCCTAAAAACAGTATGA 1066
Query 1070 AAAGGGTATCTGGGTTGCTGAAGGCAGCGTACAACGTTGGAGGTCGAAGCTTGAACTTAG 1129
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1067 AAAGAGTATCTGGGTTGCTGAAGGCAGCTTACAACGTTGGAGGTCGAAGCTTGAACTTAG 1126
Query 1130 ATACCATTCAGACTTCAATCCTTGGTTGCCGTGTATTTAGGTTCTTGTTTGCTTCTAGAT 1189
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1127 ATACCATTCAGACTTCAATCCTTGGTTGCCGTGTATTTAGGTTCTTGTTTGCTTCTAGAT 1186
Query 1190 CAAAAGGTAAAGCTGGAGATTTAGGAAGAGATTATGCTGTAACTCACTC-TGAGCCTCTT 1248
|||| |||| |||||||||||||||||||||||||||| |||||||| | |||| ||||
Sbjct 1187 CAAAGGGTAGAGCTGGAGATTTAGGAAGAGATTATGCTATAACTCAC-CGTGAGTCTCTA 1245
Query 1249 CTTCATTTCGCTCTTTGCTCGGGGAACTTGTCAGATCCATCA------A-A----C---- 1293
||||||||||||||||||||||||| |||||||||||||||| | | |
Sbjct 1246 CTTCATTTCGCTCTTTGCTCGGGGAGCTTGTCAGATCCATCAGTTCGTATATATACCCCC 1305
Query 1294 --G----TGATGATGGAGCTAGAATGTGGTAGAGAAGAGTATGTAAGATCAAACCTAGGA 1347
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1306 AAGAACGTGATGATGGAGCTAGAATGTGGTAGAGAAGAGTATGTAAGATCAAACCTAGGA 1365
Query 1348 ATATCCAAAGACAACAAGATTCTTTTGCCGAAGCTTGTTGAATTATATGCCAAGGATACT 1407
|| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 1366 ATTTCCAAAGACAACAAGATTCTATTGCCGAAGCTTGTTGAAATATATGCCAAGGATACT 1425
Query 1408 CAACTTTGCAACGTCGGTATTCTCGACATGATCGGCAACTTTTTTCCTTGTGAAGCAAGA 1467
|||| |||||||||||| |||| |||||||| || || | ||| |||||||||||||||
Sbjct 1426 GAACTCTGCAACGTCGGTGTTCTTGACATGATTGGGAAATGTTTGCCTTGTGAAGCAAGA 1485
Query 1468 GATAGAATCCAGCAGTGTCGGAACAAGAAGCATGGAAGATTCTCCATCGATTGGATT--- 1524
|||||||||||| ||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 1486 GATAGAATCCAGAAGTGTCGCAACAAGAAGCATGGAAGATTCTCTATAGATTGGATTGCA 1545
Query 1525 --TGG----A-AT--G--A-C---TACAGGATTTTTCCAATTAGCGTCAATCTCCATGGA 1569
|| | || | | | |||||||| ||||| | |||| ||||||||||||||
Sbjct 1546 CATGATTTCAGATTCGGGAACGACTACAGGATATTTCCGAGTAGCTTCAATCTCCATGGA 1605
Query 1570 AATAGTCCATCTCTAGAGCTTAAAAGTGAGCTAATCGATCCTCATTCTAAGAATTCAG-T 1628
| |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 1606 ACTAGTCCATCTGTAGAGTTTAAAAGTGAGCTAATCGATCCTCATTCTAAGAATTCAGCT 1665
Query 1629 AGCTCAATTCGAAATATCTCGAGTCCTTCACTGTGACGGCTTGTTGTTATGCTCCTCCCA 1688
|||| |||||||||||| |||||| |||||||||||||||||||||||||| |||||||
Sbjct 1666 -GCTCCATTCGAAATATCACGAGTCTTTCACTGTGACGGCTTGTTGTTATGCACCTCCCA 1724
Query 1689 TGTCGACGAATCTAGAGTCTTGGTTTGGAATCCTTTAACTGATGA 1733
| |||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 1725 TTTCGACGCATCTAGAGTCTTGGTTTGGAACCCTTTAACTGGTGA 1769
Score = 577 bits (312), Expect = 2e-163
Identities = 447/509 (88%), Gaps = 21/509 (4%)
Strand=Plus/Plus
Query 1837 GATATCATCGCTCCAGGCGGGAGCTTTGGATACTCTGAACTTAGCGTGTCTTTGAAGGGA 1896
||||| ||| ||||||||| ||||||||||||||||||||| || |||||||||||||||
Sbjct 1774 GATATGATCCCTCCAGGCGTGAGCTTTGGATACTCTGAACTCAGTGTGTCTTTGAAGGGA 1833
Query 1897 AATACTTACTGGTTGGCTAGAGGTATAACAGAAACGCCCCGCATCATATCGTTGCTCAAA 1956
||||||||||||||||||| || | |||||||||||||||||| |||||| ||||||||
Sbjct 1834 AATACTTACTGGTTGGCTATAGTTGTAACAGAAACGCCCCGCACCATATCATTGCTCAAG 1893
Query 1957 TTTGATTTTTCAACAGATAAATCTGTACCTGTGCCTCTTCCCTATC---G------GAGT 2007
||||||||||||| ||| |||||||||| ||||||||||||||||| | ||||
Sbjct 1894 TTTGATTTTTCAATAGAGAAATCTGTACTTGTGCCTCTTCCCTATCATAGTCTTCAGAGT 1953
Query 2008 CGTCGTTTCGAAGCTACTAGTCTTACTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTG 2067
|||||||| ||||||| ||| ||| | |||||||||||||| |||||||||||||||||
Sbjct 1954 CGTCGTTTTGAAGCTAGTAGCCTTTCCGTTGTTAGAGAAGAGAAACTTTCTGTGTTATTA 2013
Query 2068 CAGCGAGATA-ACAGTTCCAAGACTGAGATATGGGTGACTGA-TAAGATTGATGAGACTA 2125
|||||||||| | |||||||||||||||||||||||||| | |||||||||||| || |
Sbjct 2014 CAGCGAGATATA-AGTTCCAAGACTGAGATATGGGTGAC-AAGTAAGATTGATGACACCA 2071
Query 2126 CCGAAGTGGTGTCTTGGAGCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTT 2185
|| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2072 CCAAAGTGGTGTCTTGGAGCAAGATCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTT 2131
Query 2186 GGAATGATGCAAGTTTCTTGCTAGGC-AAGGAGAAGAAAGTCGTCATGTGCTGTGAGAAA 2244
|||||||||||||||||||| ||||| ||| ||||||||||| ||||||| || ||||
Sbjct 2132 GGAATGATGCAAGTTTCTTGATAGGCGAAG-AGAAGAAAGTCATCATGTG-TGAGAGA-- 2187
Query 2245 TTGATTGATGAGAACAAGGTC-AAAGACATGGTCTACATTGTTGGGGTGGATAATGTAGT 2303
||| |||||| | ||| | || |||| |||||||||||||||||||| | | ||||| ||
Sbjct 2188 TTGGTTGATGTGCACACG-TCCAAAGTCATGGTCTACATTGTTGGGGAGAACAATGTTGT 2246
Query 2304 CACAGAAGTGGAATTTGGAGTAGATGAAA 2332
|||| ||||||||||||| ||| || |||
Sbjct 2247 CACACAAGTGGAATTTGGGGTAAAT-AAA 2274
> AT3G18910.1 | Symbols: ETP2 | EIN2 targeting protein2 | chr3:6521719-6523043
FORWARD LENGTH=1325
Length=1325
Score = 939 bits (508), Expect = 0.0
Identities = 641/703 (91%), Gaps = 17/703 (2%)
Strand=Plus/Plus
Query 1732 GACAACAAATCCTGGATCAAGAGCTACAAAATGTTGAGCTATTATCGTGGTACCAAATAT 1791
||||| | |||||||||||||||||||||| | ||| |||||||||||||||||||||||
Sbjct 510 GACAAGAGATCCTGGATCAAGAGCTACAAACTCTTGTGCTATTATCGTGGTACCAAATAT 569
Query 1792 TTTGAAATCTACGATTTTGACTCTGATTCATGGAGGATTCTTGATGATATCATCGCTCCA 1851
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 570 TTTGAAATCTACGATTTTGACTCTGATTCATGGAGGATTCTTGATGATATTATCGCTCCA 629
Query 1852 -GGCGGGAGCT-TTGGATACTCTGAACTTAGCGTGTCTTTGAAGGGAAATACTTACTGGT 1909
|| ||||| | |||||||||| ||||||||||||||| |||| ||||||||||||||||
Sbjct 630 CGG-GGGAG-TATTGGATACTCGGAACTTAGCGTGTCTCTGAAAGGAAATACTTACTGGT 687
Query 1910 TGGCTAGAGGTATAACAGAA-A-CG-CCCCGCATCATATCGTTGCTCAAATTTGATTTTT 1966
| |||| |||| |||||||| | || ||||||| |||||| |||||||||||||||||||
Sbjct 688 TCGCTAAAGGTGTAACAGAAGAGCGGCCCCGCACCATATCATTGCTCAAATTTGATTTTT 747
Query 1967 CA-ACAGATAAATCTGTACCTGTGCCTCTTCCCTATCGGAGTCGTCGT-TT--CGAAGCT 2022
| ||||| |||||||||||||||| ||||||||||| |||||||||| || | |||||
Sbjct 748 -ATACAGAGAAATCTGTACCTGTGCTTCTTCCCTATCAGAGTCGTCGTCTTTTCCAAGCT 806
Query 2023 ACTAGTCTTACTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCGAGAT-AACAG 2081
| ||| ||| ||||||||||||||||||||||||||||||||||||||| |||| || ||
Sbjct 807 AGTAGCCTTTCTGTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCTAGATCAA-AG 865
Query 2082 TTCCAAGACTGAGATATGGGTGACTGATAAGATTGATGAGACTACCGAAGT-G--GTGTC 2138
|||||||||||||||||||||||| || |||||||||||| ||| ||| | || ||
Sbjct 866 TTCCAAGACTGAGATATGGGTGACAAATGTGATTGATGAGACCACCAAAGGAGCAGTTTC 925
Query 2139 TTGGAGCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTTGGAATGATGCAAG 2198
||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct 926 TTGGACCAAGGTCTTAGCATTGGATTTGAGCCCTCATCTTCAGATTGGGAATGATGGAAG 985
Query 2199 TTTCTTGCTAGGCAAGGAGAAGAAAGTCGTCATGTGCTGTGAGAAATTGATTGATGAGAA 2258
|||||| |||||| |||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct 986 TTTCTTCCTAGGCGAGGATAAGAAAGTCGTCATGTTCTGTGAGAAATTGATTGATGAGAA 1045
Query 2259 CAAGGTCAAAGACATGGTCTACATTGTTGGGGTGGATAATGTAGTCACAGAAGTGGAATT 2318
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||
Sbjct 1046 CAAGGTCAAAGACATGGTCTACATTGTTGGGGAGGATAATGTTGTCACAGAAGTGGGATT 1105
Query 2319 TGGAGTAGATGAAATGGATGGATGTCGGGCAGTTATTTTTAATTATGTTCCAAGTTTGAT 2378
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1106 TGGAGTAGATGAAATGGATGGATGTCGGGCAGTTATTCTTAATTATGTTCCAAGTTTGGT 1165
Query 2379 TCAAATCGAGCAAGCTGGAGGCAACAGGAAAAGAGGTAACTAA 2421
||||||||||| |||||||||||||||||||||||| |||||
Sbjct 1166 TCAAATCGAGCGAGCTGGAGGCAACAGGAAAAGAGGGCACTAA 1208
Score = 296 bits (160), Expect = 6e-79
Identities = 197/214 (92%), Gaps = 5/214 (2%)
Strand=Plus/Plus
Query 1526 GGAATGACTACAGGATTTTTCCAATTAGCGTCAATCTCCATGGAAATAGTCCATCTCTAG 1585
||||||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 229 GGAATGATTACAGGATTTTTCCGATTAGCTTCAATCTCCATGGAAATAGTCCATCTCTAG 288
Query 1586 AGCTTAAAAGTGAGCTAATCGATCCTCATTCTAAGAATTCAG-TAGCTCAATTCGAAATA 1644
|||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||
Sbjct 289 AGCTTAAAAGTGAGCTAATCGATCCTCATTCTAAGAATTCAGCT-GCTCCATTCGAAATA 347
Query 1645 TCTCGAGTCCTTCACTGTGACGGCTTGTTGTTATGCTCCTCCCA-TGTCGACGAATCTAG 1703
||||||||| |||||||||| || |||||||| ||||||||||| | | |||||||||||
Sbjct 348 TCTCGAGTCATTCACTGTGAGGGATTGTTGTTGTGCTCCTCCCAAT-TGGACGAATCTAG 406
Query 1704 AGTCTTGGTTTGGAATCCTTTAACTGATGACAAC 1737
|||| ||||||||||||||||||| | ||| |||
Sbjct 407 AGTCGTGGTTTGGAATCCTTTAACCGGTGA-AAC 439
> AT5G47300.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:19198125-19199375 FORWARD LENGTH=1251
Length=1251
Score = 95.3 bits (51), Expect = 2e-18
Identities = 107/133 (80%), Gaps = 7/133 (5%)
Strand=Plus/Plus
Query 2035 GTTGTTAGAGAAGATAAACTTTCTGTGTTATTGCAGCGAGATAACAGTTCCAA-GACTGA 2093
|||||||||||||| |||||| | ||||| || || || || || | | ||| ||| ||
Sbjct 865 GTTGTTAGAGAAGAGAAACTTGCGGTGTTGTTACAACGCGAAAATACAT-CAAGGACAGA 923
Query 2094 GATATGGGTGACTGA-TAAGATTGATGAGACTACCGAAGTGGTGTCTTGGAGCAAGGTCT 2152
|||||||||||| | || ||||| |||| ||| |||||||||| ||||||| |||||
Sbjct 924 GATATGGGTGAC-AAGTAGGATTGGTGAG---ACCAAAGTGGTGTCGTGGAGCATGGTCT 979
Query 2153 TAGCATTGGATTT 2165
||||| |||||||
Sbjct 980 TAGCAGTGGATTT 992
> AT3G49980.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:18530329-18531477 REVERSE LENGTH=1149
Length=1149
Score = 60.2 bits (32), Expect = 9e-08
Identities = 34/35 (97%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1880 GCGTGTCTTTGAAGGGAAATACTTACTGGTTGGCT 1914
||||||||||||||||||||||||||||||| |||
Sbjct 608 GCGTGTCTTTGAAGGGAAATACTTACTGGTTTGCT 642
> AT1G54550.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr1:20369651-20370986 FORWARD LENGTH=1336
Length=1336
Score = 58.4 bits (31), Expect = 3e-07
Identities = 85/109 (78%), Gaps = 12/109 (11%)
Strand=Plus/Plus
Query 1801 TACGATTTTGA-CTCTGATTCATGGAGGATTCTTGATGA-T-ATCATCGCTCCAGGCGGG 1857
||||||||| | |||||||||||||||| |||||||| | | || || | | ||| |
Sbjct 552 TACGATTTT-AGCTCTGATTCATGGAGGGTTCTTGAT-ATTGAT-ATAGAT--TGGCATG 606
Query 1858 AGCTTTGGATACTCTGAACTTAGCGTGTCTTTGAAGGGAAATACTTACT 1906
| | || || || || |||||||||||||||||||||||||||||
Sbjct 607 AAC--TGTTTAGTCACAA--TAGCGTGTCTTTGAAGGGAAATACTTACT 651
> AT3G20690.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7231570-7232682 REVERSE LENGTH=1113
Length=1113
Score = 56.5 bits (30), Expect = 1e-06
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 1880 GCGTGTCTTTGAAGGGAAATACTTACTGGT 1909
||||||||||||||||||||||||||||||
Sbjct 611 GCGTGTCTTTGAAGGGAAATACTTACTGGT 640
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120230305275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5