BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318665
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19080.1 | Symbols: | SWIB complex BAF60b domain-containing... 2202 0.0
AT1G49520.1 | Symbols: | SWIB complex BAF60b domain-containing... 560 1e-158
> AT3G19080.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr3:6595344-6598848 FORWARD LENGTH=1722
Length=1722
Score = 2202 bits (1192), Expect = 0.0
Identities = 1330/1396 (95%), Gaps = 11/1396 (1%)
Strand=Plus/Plus
Query 1 ATGGTTTCCGACTTGGACCTCGTGACCCGACTCCGTGAGATTCTCGGTAGCTCCGACCTA 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 153 ATGGTTTCCGACTTGGACCTCGTGACCCGACTCCGTGAGATTCTCGGTAGCTCCGACCTG 212
Query 61 AACACGGCGACTCCGGCTAGCGTCCGTCGTCAGCTGGAGGCAGATTTCGGTGTCGACTTG 120
||||||||||||||||| ||||||||||||||| ||||||| ||||||||||| ||||||
Sbjct 213 AACACGGCGACTCCGGCAAGCGTCCGTCGTCAGTTGGAGGCGGATTTCGGTGTGGACTTG 272
Query 121 ACAGATAAAAAAGGC-TATATTAGGGATCAAATCGATACTTTTCTCGAGAGCAATGGCGC 179
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 ACAGATAAAAAA-GCGTATATTAGGGATCAAATCGATACTTTTCTCGAGAGCAATGGCGC 331
Query 180 TGTAGAAGACAAACCTGAGAGCT-CTAAGCCAGAAGAAGACATTAATGCCGACGAAATCA 238
|||||||||||||||||||| | | ||| ||||||| |||||||||||||||||||||
Sbjct 332 GGTAGAAGACAAACCTGAGAG-TCCCAAGGTAGAAGAATACATTAATGCCGACGAAATCA 390
Query 239 AGGCGGAAATTGAAGGAGGCGATGGAGAAGACCTCGACGGAGATGGAAGTGAAAGTGAGG 298
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 391 AGGCGGAAATTGAAGGAGGCGATGGAGAAGACCTCGACGGAGATGGAAGTGGAAGTGAGG 450
Query 299 AAGAGAAGGAGGAACGGCCAGTAAAGGCCAAGAAACGAGGTGGTGGCTTTACCAAAGTAT 358
|||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 451 AAGAGAAGGAAGAACGGCCAGTAAAGGCCAAGAAGCGAGGTGGTGGCATTACCAAAGTAT 510
Query 359 CTCAGTTATCTCCACAACTTGAGAAAGTTGTTGGAGCATCTCAGTTAGGTCGAACCGAGG 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 511 CTCAGTTATCTCCACAACTTGAGAAAGTTGTTGGAGCATCTCAGTTAGGTCGAACCGAGG 570
Query 419 TTGTGAAGAAAATGTGGGCCTATATCCGAGAGAACGATTTGCAAGACCCAAAGGACAGGA 478
||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||
Sbjct 571 TTGTGAAGAAAATGTGGGCATATATCCGAGAGAAGGATTTGCAAGACCCAAAGGATAGGA 630
Query 479 GGAAGATAGTGTGTGACGAGTTGCTGCATTCCTTGTTCCGTGTAAAGACCATTAATATGT 538
||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 631 GGAAGATAGTGTGTGACGAGTTGTTGCATTCCTTGTTCCGTGTTAAGACCATTAATATGT 690
Query 539 TTCAAATGAGCAAGGCATTAACCAAGCATATTTGGCCCTTAGGTGATGGAGATGGGTGTG 598
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 691 TTCAAATGAACAAGGCATTAACCAAGCATATTTGGCCCTTAGGTGATGGAGATGGGTGTG 750
Query 599 CTAACAATGTGAAAGAAGAAGATGAAGAGGAGGCATCagagggaacagataagaaaaggg 658
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 751 CTAACGATGTGAAAGAAGAAGATGAAGATGAGGCATCAGAGGGAACAGATAAGAAAGGGG 810
Query 659 agcaaagcgaagaagtggaagagaataaggaagaagaaagtgaagaggaggaagTTAGGA 718
|||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 811 AGCAGAGCGAAGAAGTGGAAGAGAATAAGGAAGAAGAAAGTGAAGAGCAGGAAGTTAGGA 870
Query 719 GTTTGCGGAAACGCAAGAGAAAAAAGCCTGCCAAGTCGGTAGAGAAGCCCAAAAGAAAAG 778
|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 871 GTTTGCGGAAACGCAAGAGAAAAAAGCCAGCCAAGTCGGTAGAGAAGCCCAAGAGAAAAG 930
Query 779 GAGGAGGTGGCTTTGCTAAAGTTTGCAGCCTCTCGCCGGAGCTTCAGGCATTTACTGGGG 838
||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 931 GAGGAGGCGGCTTTGCTAAAGTTTGCAGCCTCTCGCCAGAGCTTCAGGCGTTTACTGGGG 990
Query 839 TGACAGAATTAGCCAGGACCGAGGTTGTGAAAATGCTTTGGAAGTACATAAAGGAGAACA 898
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 991 TGACAGAATTAGCCAGGACAGAGGTTGTGAAATTGCTTTGGAAGTACATAAAGGAGAACA 1050
Query 899 ATTTGCAAGATCCGAATGATAAACGCAT-AATAATATGCGACGAATCATTGCGATCTTTA 957
|||| ||||||||||||||||||||| | |||||||||||||||||||| |||||| |
Sbjct 1051 ATTTACAAGATCCGAATGATAAACGC-TCTATAATATGCGACGAATCATTTCGATCTCTG 1109
Query 958 TTCCCTTTCGAGTCCATCAATATGTTTCAAATGAGTAAACTGCTAACAAAGCACATATGG 1017
|||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1110 TTCCCTGTCGAGTCCATCAATATGTTTCAAATGAATAAACAGCTAACAAAGCACATATGG 1169
Query 1018 CCTTTAGAGGATAATGCAGGAGAATCAGTTAGCTCTAACTCTCCAAAGAATGGAAAGCAA 1077
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1170 CCTTTAGAGGATAATGCAGGAGAATCAGTTAGCTCTAAGTCTCCAAAGAATGGAAAGCAA 1229
Query 1078 AAAATGGAATCAGATGGAGATAGTGAGGAACCAAATGAGAAAGATAAAAAGCAGAAGAAA 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1230 AAAATGGAATCAGATGGAGATAGTGAGGAACCAAATGAGAAAGATAAAAAGCAGAAGAAA 1289
Query 1138 GAAGTTCTTGCTCCCCTTCCACTTTCAGTTGCTCTTGTCAAGTTCTTGGGTAATAATGGA 1197
|||||||||||||||||||||||||||| |||||||||||||||||||||| || |||
Sbjct 1290 GAAGTTCTTGCTCCCCTTCCACTTTCAGATGCTCTTGTCAAGTTCTTGGGTGAT---GGA 1346
Query 1198 GAAAGCTCGCTGTCAAGGGCGGATGTGGTAAAGAGATTGTGGGAGTACATAAAACAGAAT 1257
|||| ||||||||| |||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1347 GAAAACTCGCTGTCGAGGGCGGATGTGGTAAAGAGATTGTGGGAGTACATAAATCATAAT 1406
Query 1258 GATCTTCAGGATCCTTCTGACAAGAAGAGAATCATATGTGATGAGAAGCTGAAAGAACTC 1317
||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||
Sbjct 1407 GATCTTCAGGATCCTTCTGACAAGAGGAGAGTCATATGCGATGAGAAGCTGAAAGAACTC 1466
Query 1318 TTCAAAGTTGATTCATTCGAAGACACGTC-GTTCTCAACACTTCTGACCAACCACTTCAC 1376
|| |||||||||||||||||||||| || || ||||| ||||||||||||||||||||
Sbjct 1467 TTTGAAGTTGATTCATTCGAAGACACATCAGT-CTCAAAACTTCTGACCAACCACTTCAT 1525
Query 1377 CAAGGCCGAACAATGA 1392
||||||||||||||||
Sbjct 1526 CAAGGCCGAACAATGA 1541
> AT1G49520.1 | Symbols: | SWIB complex BAF60b domain-containing
protein | chr1:18329696-18331869 FORWARD LENGTH=1337
Length=1337
Score = 560 bits (303), Expect = 1e-158
Identities = 615/763 (81%), Gaps = 31/763 (4%)
Strand=Plus/Plus
Query 279 AGATGGAAGTGAAAGTGAGGAAGAGAAGGA-GGAACGGCCAGTAAAGGCCAAGAAACGAG 337
||| |||||||||| || || || || || |||| || |||||||| |||||||| |
Sbjct 277 AGAGGGAAGTGAAAACGATGATGATAA-GACCGAACTACCGGTAAAGGCTAAGAAACGTG 335
Query 338 GTGGTGGCTTTACCAAAGTATCTCAG-TTATCTCCACAACTTGAGAAAGTTGTT-GGAGC 395
| ||||| |||| |||| ||| |||| || || |||||||| ||| ||||| || ||| |
Sbjct 336 GAGGTGGGTTTAACAAAATATGTCAGCTT-TCACCACAACTAGAG-AAGTTTTTAGGAAC 393
Query 396 ATCTCAGTTAGG-TCGAACCGAGGTTGTGAAGAAAATGTGGGCCTATATCCGAGAGAACG 454
||||| || || |||||| ||||||||||||||||||||||| |||||||||||| |||
Sbjct 394 TTCTCAATT-GGCTCGAACAGAGGTTGTGAAGAAAATGTGGGCGTATATCCGAGAGCACG 452
Query 455 ATTTGCAAGACCCAAAGGACAGGAGGAAGATAGTGTGTGACGAGTTGCTGCATTCCTTGT 514
|||||||||| |||| | | ||| |||| ||| | || ||||||| ||| ||||| || |
Sbjct 453 ATTTGCAAGATCCAACGAATAGGCGGAATATATTATGCGACGAGTCGCTTCATTCGTTAT 512
Query 515 TCCGTGTAAAGACCATTAATATGTTTCAAATGAGCAAGGCATTAACCAAGCATATTT-GG 573
| ||||||||||| ||||||||||||||||||| ||||||||| | |||||||||| ||
Sbjct 513 TTCGTGTAAAGACAATTAATATGTTTCAAATGAACAAGGCATTGGCAAAGCATATTTGGG 572
Query 574 CCCTTAGGTGATGGAGATGGGTGTGCTAACAATGTGAAAGAAGAAGATGAAGAGGAGGCA 633
| | || |||||||||||||||| ||| ||||||||||| ||||||| || ||| ||
Sbjct 573 CGC-TAAATGATGGAGATGGGTGTTTTAAGAATGTGAAAGAGGAAGATGTTGATGAGACA 631
Query 634 TCagaggg-aacagataagaaa-agggagcaaagcgaagaagtggaagagaataaggaag 691
|||| ||| || ||| ||||| | | | ||| |||||||| | ||||||||| ||||
Sbjct 632 TCAG-GGGAAAGAGACGAGAAAGATGTA-AAAATCGAAGAAGCGTTAGAGAATAACGAAG 689
Query 692 aagaaagtga-agaggaggaagTTAGGAGTTTGCGGAAACGC-AA-G--AG-AAA-AAAG 744
|||| ||| | ||| || |||| | | ||| | || |||||| || | || ||| |||
Sbjct 690 AAGAGAGT-AGAGAAGAAGAAGATCGTAGTGTCCGAAAACGCAAACGCAAGAAAAGAAAA 748
Query 745 CCTGCCAAGTCGGTA-GAGAAGCCCAAAAGAAAAGGAGGAGGTGGCTTTGCTAAAGTTTG 803
|| |||||||| | | ||||| || ||||||| ||||||||| ||| | ||||||||
Sbjct 749 CCAGCCAAGTCCG-AGGAGAA-ACC-GAAGAAAA-AAGGAGGTGGTTTTACCAAAGTTTG 804
Query 804 CAGCCTCTCGCCGGAGCTTCAGGCATTTACTGGGGTGACAGAATTAGCCAGGACCGAGGT 863
||| || || || || |||||||| |||||||| | | | ||||| || || |||||
Sbjct 805 CAGTCTTTCACCAGAACTTCAGGCTTTTACTGGAACGCCTCAGTTAGCTAGAACAGAGGT 864
Query 864 TGTGAAAATGCTTTGGAAGTACATAAAGGAGAACAATTTGCAAGATCCGA-ATGATAAAC 922
|||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||
Sbjct 865 TGTGAAAATGCTTTGGAAATACATAAAGGAGAACAATTTGCAAGATCC-ATCTGATAAAC 923
Query 923 GCATAATAATATGCGACGAATCATTGCGATCTTTATTCCCTTTCGAGTCCATCAATATGT 982
||| |||||||||||||||||||||||| ||| | |||||| | ||||| ||||||||||
Sbjct 924 GCACAATAATATGCGACGAATCATTGCGGTCTCTGTTCCCTGTGGAGTCTATCAATATGT 983
Query 983 TTCAAATGAGTAAACTGCTAAC-AAAGCACATATGGCCTTTAG 1024
||||||||| |||| ||| | ||| ||||| |||||| |||
Sbjct 984 TTCAAATGAACAAACAACTAGCCAAA-CACATTTGGCCTCTAG 1025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5