BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318670
Length=573
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19150.1 | Symbols: KRP6, ICK4, ACK1 | KIP-related protein 6... 710 0.0
> AT3G19150.1 | Symbols: KRP6, ICK4, ACK1 | KIP-related protein
6 | chr3:6616352-6617696 REVERSE LENGTH=908
Length=908
Score = 710 bits (384), Expect = 0.0
Identities = 530/596 (89%), Gaps = 28/596 (5%)
Strand=Plus/Plus
Query 1 ATGAGCGAGAGAAAGCGAGAGCTTGAAGAAGAAGCTTCAAGCACAAGCGTCTCACCTCTC 60
||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| ||
Sbjct 42 ATGAGCGAGAGAAAGCGAGAGCTTGCAGAAGAAGCTTCAAGCACAAGCTTCTCACCACT- 100
Query 61 AACAAAAAGACAAAGCTTAATGA---TTCTGATTCATCACCGGACTCTCATGACGTCATC 117
| | ||| || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 101 GA-AGAAA-ACGAAGCTTAATGATTCTTCTGATTCATCACCGGACTCTCATGACGTCATC 158
Query 118 GTCTTCGCGGCTTCTTATTCTTCTATTGCTTCGTCGGCGGCTTTAGCTTCAGATGAATGT 177
|||||||||| ||| | |||||| |||||||||||||||||||||| || |||||||||
Sbjct 159 GTCTTCGCGGTTTCATCTTCTTCCGTTGCTTCGTCGGCGGCTTTAGCGTCTGATGAATGT 218
Query 178 TCCGTTACTACCGCCGGAGAAGAAAACGATCAGTGCTCGAGTATCAGCTCCGGTTTTTTC 237
|||||||| | || |||||||||| ||||||| |||||||||||||||||||| ||||
Sbjct 219 TCCGTTACCATCGGTGGAGAAGAAAGTGATCAGTCCTCGAGTATCAGCTCCGGTTGTTTC 278
Query 238 A-C-------C---AG-AATCGCGAAGAACAGTTCGTCGTTTGGTGTAGATCTGGA-GAC 284
| | | || ||||||||||||||||||||||||||||||||||||||| ||
Sbjct 279 ACCAGTGAATCGAAAGAAATCGCGAAGAACAGTTCGTCGTTTGGTGTAGATCTGGAGGA- 337
Query 285 TCATGAAATC-AAGACCGAAACCGAAACCTCAACATTCATCAACAACAAATTCAGAAAAG 343
|||| ||||| || |||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 338 TCATCAAATCGAA-ACCGAAACCGAAACCTCAACATTCATCACCAGCAATTTCAGAAAAG 396
Query 344 AGACAAGTCCAGTGAGCGAGGGTTTGGGAGAAACAACAACAGAAATGGAATCATCATCGG 403
|||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 397 AGACGAGTCCAGTGAGTGAGGGTTTGGGAGAAACGACAACAGAAATGGAATCATCATCGG 456
Query 404 CGACGGAGAGAAAACAACCGAAAGTGAGCAAGACTCCAACGCCGACGGAGATTGAGGATT 463
| ||| |||||||||||||| ||||| |||||||||||| || |||||||||||||||
Sbjct 457 CAACGAAGAGAAAACAACCGGGGGTGAGGAAGACTCCAACGGCGGCGGAGATTGAGGATT 516
Query 464 TCTTCTCGGAGCT--AGAG---A-ACGATAAGAAGAAGCGATTCATAGAAAAGTACAACT 517
| ||||||||||| |||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 517 TGTTCTCGGAGCTAGAGAGTCAAGACGATAAGAAGAAGCAATTCATAGAAAAGTACAACT 576
Query 518 TCGATATTGTCAATGACGAACCGCTTGAAGGTCGCTACAAGTGGGATCGACTTTAA 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 577 TCGATATTGTCAATGACGAACCGCTTGAAGGTCGCTACAAGTGGGATCGACTTTAA 632
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27528312556
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5