BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318671
Length=1005
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19160.1 | Symbols: ATIPT8, PGA22, IPT8 | ATP/ADP isopenteny... 1500 0.0
> AT3G19160.1 | Symbols: ATIPT8, PGA22, IPT8 | ATP/ADP isopentenyltransferases
| chr3:6621988-6623278 REVERSE LENGTH=1040
Length=1040
Score = 1500 bits (812), Expect = 0.0
Identities = 939/1001 (94%), Gaps = 6/1001 (1%)
Strand=Plus/Plus
Query 1 ATGCAAAATCTTACTTCCACATTCGTGTCTCGTTCCATAG-TCCCGATCACTTCTCCGCG 59
|||||||||||||| ||||||||||| |||| |||||| | |||||||||||||||||||
Sbjct 43 ATGCAAAATCTTACGTCCACATTCGTCTCTCCTTCCAT-GATCCCGATCACTTCTCCGCG 101
Query 60 ACTGCGACTGCCACCACCACGATCAGTAGTTCCCATGACTACCGTTTGCATGGAACAATC 119
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 GCTGCGACTGCCACCACCACGATCAGTAGTTCCCATGACTACCGTTTGCATGGAACAATC 161
Query 120 ATCCAAGCAAAAAGTGGTTGTGATCATGGGAGCCACGGGATCAGGCAAGTCACGTCTCTC 179
|| ||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct 162 ATACAAGCAAAAAGTGGTTGTGATCATGGGAGCCACCGGATCAGGCAAGTCATGCCTCTC 221
Query 180 AATCGATCTAGCAACCCGTTTCTCTGGAGAGGTCGTCAATTCTGACAAAATTCAATTCTA 239
||||||||||||||| ||||||||||| ||| |||||||||| ||||| |||||||||||
Sbjct 222 AATCGATCTAGCAACTCGTTTCTCTGGCGAGATCGTCAATTCCGACAAGATTCAATTCTA 281
Query 240 CAATGGATTGAAGGTCACTACTAATCAAATGAGCATCCCTGAGAGATGTGGAGTCCCTCA 299
| ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 282 CGATGGATTGAAGGTCACTACGAATCAAATGAGCATCCTTGAGAGATGTGGAGTCCCTCA 341
Query 300 CCATCTCCTTGGTGAGCTCCCTCCGGATGACAGCGAACTAACTACCTCCGAATTCCGCTC 359
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 342 CCATCTCCTTGGTGAGCTCCCTCCGGATGATAGCGAACTAACTACCTCCGAATTCCGCTC 401
Query 360 TTTGGCGTCGCGGTCCATCTCCGAGATTACTGCTCGTGGAAATCTCCCGATTGTAGCTGG 419
|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 402 TTTGGCGTCGCGGTCCATCTCCGAGATTACTGCTCGTGGAAACCTCCCGATTATAGCTGG 461
Query 420 CGGATCAAACTCCTTTATTCATGCTCTCCTTGTCGACCGTTTCGACCCCCAAACCTATCC 479
|||||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 462 TGGATCAAACTCCTTCATTCATGCTCTCCTTGTCGACCGTTTTGACCCCAAAACCTATCC 521
Query 480 ATTCTCTTCCGAGGTC-TCCATCTCTTCCAACTTGAGGTACGAGTGTTGCTTCCTTTGGG 538
||||||||| ||| | |||||||||||| |||||||||||||||||||||||||||||
Sbjct 522 ATTCTCTTCTGAGA-CATCCATCTCTTCCGGCTTGAGGTACGAGTGTTGCTTCCTTTGGG 580
Query 539 TGGATGTCTCAGTCTCGGTCCTGTTCGAGTACCTCTCAAAACGTGTCGACCAGATGATGG 598
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 581 TGGATGTCTCAGTGTCGGTCCTGTTCGAGTACCTCTCGAAACGTGTCGACCAGATGATGG 640
Query 599 AGTCAGGGATGTTCGAGGAGCTCGCTGGTTTCTACAACCCGAGATATTCCGGGTCCACGA 658
|||||||||||||||||||||| || ||||||||| |||||||||||||||||||| | |
Sbjct 641 AGTCAGGGATGTTCGAGGAGCTAGCCGGTTTCTACGACCCGAGATATTCCGGGTCCGCAA 700
Query 659 TCCGAACCCACGGGATTCACAAGACCATAGGAATACCCGAGTTTGACCGGTACTTCAGCT 718
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 701 TCCGAGCCCACGGGATTCACAAGACCATAGGAATACCCGAGTTCGACCGGTACTTCAGCT 760
Query 719 TATACCCACCGGAGA-ATAACCACAAGATGCCCGAATGGGACCAAGCAAGAAAGGCGGCA 777
||||||| || |||| | || || |||||| |||||||||||||||||||||||| |||
Sbjct 761 TATACCCGCCTGAGAGA-AAGCAGAAGATGTCCGAATGGGACCAAGCAAGAAAGGGGGCG 819
Query 778 TACGAGGAAGCTGTGCAAGAGATCAAAGAGAACACATGGCGTCTTGCAAAGAAGCAGATT 837
|| || |||||||| |||||||||||||||||||||||| | ||||| ||||||||||||
Sbjct 820 TATGACGAAGCTGTCCAAGAGATCAAAGAGAACACATGGAGGCTTGCGAAGAAGCAGATT 879
Query 838 GAGAGGATCGTGAAGCTGAAAAGCAGCGGATGGGACATTCAGAGGTTGGACGCTACGCCG 897
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 880 GAGAGGATCATGAAGCTGAAAAGCAGCGGATGGGACATTCAGAGGTTGGACGCTACGCCG 939
Query 898 TCATTCAGAAGATCGTCGAGAGAGATTTGGGACAAGACTGTTTTGGATGAAAGCGTCAAG 957
||||| |||||||||| ||||||||||||||||| |||||||||||||||||| |||||
Sbjct 940 TCATTTGGAAGATCGTCAAGAGAGATTTGGGACAATACTGTTTTGGATGAAAGCATCAAG 999
Query 958 GTTGTGAAACGCTTCTTGGTGAAAGACAAAGTGGGAGTTAT 998
||||||||||||||||||||||||||||||||| |||||||
Sbjct 1000 GTTGTGAAACGCTTCTTGGTGAAAGACAAAGTGTGAGTTAT 1040
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49229464060
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5