BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318673
Length=2508
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19180.1 | Symbols: ARC6H, PARC6, ATCDP1, CDP1 | paralog of ... 2039 0.0
> AT3G19180.1 | Symbols: ARC6H, PARC6, ATCDP1, CDP1 | paralog of
ARC6 | chr3:6632676-6637224 FORWARD LENGTH=2865
Length=2865
Score = 2039 bits (1104), Expect = 0.0
Identities = 1194/1239 (96%), Gaps = 0/1239 (0%)
Strand=Plus/Plus
Query 10 GCTTACACATTTCCAGTTCTCCCTTCTTCTTGTCTGCTTTGCGCAATCTCTAATCGCGGC 69
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 144 GCTTACACATTTCCAGTTCTCCCTTCTTCTTGTCTGCTTTGCGGAATCTCCAATCGCAGC 203
Query 70 ACCAGCTTCGTCGTAGATCGCCCGGAGCTTCAGATCTCAGGTCTCTTCGTCGTTCGTTCT 129
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 204 ACCAGCTTCGTCGTAGATCGCCCGGAGCTTCAGATCTCAGGTCTCCTCGTCGTTCGTTCT 263
Query 130 GAATCCGGTGAAATCTTCGGTTCTGGTTTATCTTTGCGGCGGTTTCAGCGTGAAGGACGG 189
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 264 GAATCCGGTGAATTCTTCGGTTCTGGTTTATCTTTGCGGCGGTTTCAGCGAGAAGGACGG 323
Query 190 AGGAGGCTGAATGCTGGTGGTGGTGGTATCCATGTTGTGGACAATGCGCCGTCTCGTACT 249
|||||| ||||||||| |||||||||||||||||| || |||||||||||||||||||||
Sbjct 324 AGGAGGTTGAATGCTGCTGGTGGTGGTATCCATGTCGTCGACAATGCGCCGTCTCGTACT 383
Query 250 TCTTCCCTCGCTGCATCTACCTCGGCAATCGAAATCCCGGTTACGTGTTACCAGCTTATC 309
||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 384 TCTTCTCTCGCTGCATCTACCTCTACAATCGAACTCCCGGTTACGTGTTACCAGCTTATC 443
Query 310 GGAGTTTCTGATCAAGCTGAGAAAGACGAGGTGGTGAAGTCGGTTATAAATTTGAAAAAA 369
||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 444 GGAGTTTCTGAGCAAGCTGAGAAAGACGAGGTCGTTAAGTCGGTTATAAATTTGAAAAAA 503
Query 370 GCTGATGCTGAAGAAGGTTATACAATGGAAGCTGCTGTAGCTCGCCAGGATCTTCTCATG 429
||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 504 ACTGATGCTGAAGAGGGTTATACAATGGAAGCTGCTGCAGCTCGCCAGGATCTTCTCATG 563
Query 430 GATGTTAGGGATAAACTTCTTTTTGAACCAGAATATGCTGGTAACCTGAAAGAAAAGATC 489
||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 564 GATGTTAGGGATAAACTTCTTTTTGAATCAGAATATGCTGGTAACCTAAAAGAAAAGATT 623
Query 490 GCTCCTAAATCTCCTCTTAGAATTCCGTGGGCATGGTTGCCTGGTGCTCTTTGCCTTCTT 549
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 624 GCTCCTAAATCTCCTCTCAGAATTCCGTGGGCATGGTTGCCTGGTGCTCTATGCCTTCTT 683
Query 550 CAAGAGGTTGGACAAGAAAAACTCGTGCTGGATATTGGCCGGGCTGCTCTCAGGAACCTT 609
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 684 CAAGAGGTTGGACAAGAAAAACTTGTGCTGGATATTGGCCGGGCTGCTCTCAGGAACCTT 743
Query 610 GATTCGAAGCCATATATTCATGATATATTTTTATCTATGGCACTTGCTGAGTGTGCGATT 669
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 744 GATTCAAAGCCATATATTCATGATATATTCTTATCTATGGCACTTGCTGAGTGTGCAATT 803
Query 670 GCGAAGGCTGCTTTCGAGGCTAACAAGGTCTCTCAAGGATTTGAAGCTCTTGCTCGTGCT 729
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 804 GCCAAGGCTGCTTTCGAGGTTAACAAGGTCTCTCAAGGATTTGAAGCTCTTGCTCGTGCT 863
Query 730 CAATGTTTTCTGAAGAGTAAAGTTACTCTTGGGAAACTTGCATTGTTAACTCAGATTGAG 789
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 864 CAAAGTTTTCTGAAGAGTAAAGTTACTCTTGGGAAACTTGCATTGTTAACTCAGATTGAG 923
Query 790 GAGTCACTAGAGGAGCTTGCACCTCCTTGCACACTGGATCTACTGGGCCTGCCTCGCACG 849
||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||
Sbjct 924 GAGTCACTAGAGGAGCTTGCACCACCTTGCACATTGGATCTACTGGGCCTGCCACGCACG 983
Query 850 CCAGAAAATGCAGAGAGGAGGCGAGGTGCAATTGCAGCGTTACGCGAACTGCTCAGACAG 909
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct 984 CCAGAAAATGCAGAGAGGAGGCGAGGTGCAATTGCCGCGCTACGCGAACTGCTCAGACAG 1043
Query 910 GGCCTTAGTGTTGAAGCTTCATGTCAAATTCAAGACTGGCCATGCTTTTTGAGCCAGGCG 969
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 GGCCTTAGTGTTGAAGCTTCATGTCAAATTCAAGACTGGCCATGCTTTTTGAGCCAGGCA 1103
Query 970 ATTAGTAGGTTATTGGCCACAGAGATTGTCGATCTTCTTCCATGGGATGACTTAGCCATT 1029
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1104 ATTAGCAGGTTATTGGCCACAGAGATTGTCGATCTTCTTCCATGGGATGATTTAGCCATT 1163
Query 1030 ACACGGaaaaataaaaaaTCACTCGAATCCCACAATCAAAGAGTGGTAATTGATTTTAAT 1089
||||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 1164 ACACGGAAAAATAAAAAATCACTGGAATCCCACAATCAAAGAGTTGTTATTGATTTTAAT 1223
Query 1090 TGTTTCTACATGGTGTTACTTGCTCACATCGCTGTTGGATTTTCAGGCAAGCAAAATGAA 1149
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1224 TGTTTCTACATGGTGTTACTTGGTCACATCGCTGTTGGATTTTCAGGCAAGCAAAATGAA 1283
Query 1150 ACGATTAATAAAGCAAAAACAATATGCGAATGTCTCATAGCATCAGAAGGTGTTGATCTG 1209
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1284 ACGATTAATAAAGCAAAAACGATATGCGAATGTCTCATAGCATCAGAAGGTGTTGATCTG 1343
Query 1210 AAATTTGAGGAAGCTTTTTGCTCATTTCTTCTAAAACAG 1248
|||||||||||||||||||||||||||||||||||||||
Sbjct 1344 AAATTTGAGGAAGCTTTTTGCTCATTTCTTCTAAAACAG 1382
Score = 1869 bits (1012), Expect = 0.0
Identities = 1158/1228 (94%), Gaps = 12/1228 (1%)
Strand=Plus/Plus
Query 1281 ACAGGGTTCCGAGGCAGAGGCCCTGGAAAAACTTAAGCAGCTGGAATCAAATTCAGACTC 1340
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 ACAGGGTTCCGAGGCAGAGGCCCTGGAAAAACTTAAGCAGCTGGAATCAAATTCAGACTC 1438
Query 1341 TGCCGTTCGTAATTCGATCCTGGGGAAAGAGTCGAGAAGTACTTCTGCTGCTCCATCACT 1400
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 1439 TGCCGTTCGTAATTCGATCTTGGGGAAAGAGTCGAGAAGTACTTCTGCTACTCCCTCACT 1498
Query 1401 GGAAGCGTGGCTTACGGAGTCCGTGCTTGCTAACTTTCCAGACACAAGGGGTTGTTCTCC 1460
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 GGAAGCGTGGCTAATGGAGTCCGTGCTTGCTAACTTTCCAGACACAAGGGGTTGTTCTCC 1558
Query 1461 ATCATTGGCCAAtttttttCGGGGTGAAAAGAAATATCCAGAAAACAAGAAAATGGGGTC 1520
||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 1559 ATCTTTGGCCAATTTTTTCCGGGCTGAAAAGAAATATCCAGAAAACAAGAAAATGGGGTC 1618
Query 1521 ACCTTCGATCATGAATTACAAGACAAACCAAAGACCGCTTTCCACAACGCAGTTCGTGAA 1580
|||||||||||||||| | ||||| ||||||||||| ||||||||||| |||||||||||
Sbjct 1619 ACCTTCGATCATGAATCATAAGACGAACCAAAGACCACTTTCCACAACACAGTTCGTGAA 1678
Query 1581 CTCGTCACAACATCTTTATACAGCTGTCGAGCAGTTGACACCAACAGATTTGCAGAGCCC 1640
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1679 CTCGTCACAACATCTTTATACAGCTGTCGAGCAGTTGACACCAACAGATTTGCAGAGCCC 1738
Query 1641 AGTGGTTTCAGCCAAGAATATTGATGAAAGCGGTGCCAGTATGCCATCTGTTCAACTGAA 1700
|||||| ||||||||||||| |||||||| | ||||||||||||||||||||||||||||
Sbjct 1739 AGTGGTATCAGCCAAGAATAATGATGAAACCAGTGCCAGTATGCCATCTGTTCAACTGAA 1798
Query 1701 GAGGAACCTTGGTGTACACAAAAATAAAATATGGGATGAGTGGCTCTCTCAAAGCAGTTT 1760
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 GAGGAACCTTGGTGTACACAAAAATAAAATATGGGATGAGTGGCTCTCTCAAAGCAGTTT 1858
Query 1761 GATCGGAAGGGTATCTGTTGTTGCTTTACTGGGTTGCACCGTGTTCTTCTCTCTAAAGCT 1820
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1859 GATCGGAAGGGTATCTGTTGTTGCTTTACTGGGTTGCACCGTGTTCTTCTCTCTGAAGCT 1918
Query 1821 AACAGGCATTAGGTCTGGTAGACTACAGAGGCTGCCTATATCGGTTTCTGGTAAGCCGCA 1880
| |||||||||||||||||||||||||||| |||||||||||||||||| || ||||||
Sbjct 1919 ATCAGGCATTAGGTCTGGTAGACTACAGAGTATGCCTATATCGGTTTCTGCTAGGCCGCA 1978
Query 1881 TTCGGAATCAGATTCTTTTCTGTGGAAAACAGAGTCTGGGAGTTTCAGAAAAAACCTTGC 1940
||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1979 TTCAGAATCAGATTCTTTTCTGTGGAAAACAGAGTCTGGGAATTTCAGAAAAAACCTTGA 2038
Query 1941 TTCTGTGAATAGAAATGGTATCGTGGGCAACATTAAAGTGCTCATGGACATGTTAAAGAT 2000
||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||
Sbjct 2039 TTCTGTGAATAGAAATGGTATCGTGGGAAACATCAAAGTGCTCATTGACATGTTAAAGAT 2098
Query 2001 GGATCATGGCGAACATCCAGATGCCTTGTATCTGAAAAGCTCTGGTCAATCAGCTACATC 2060
| || |||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 2099 GCATTGTGGCGAACATCCGGATGCCCTGTATCTGAAAAGCTCTGGTCAATCAGCTACATC 2158
Query 2061 ATTGTCTCATTCTGCGTCAGAACTGCATAAAAGACCAATGGATACAGAAGACGCGGAAGA 2120
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 2159 ATTGTCTCATTCTGCGTCAGAACTGCATAAGAGACCAATGGATACAGAAGAAGCGGAAGA 2218
Query 2121 GCTTGTGAGACAGTGGGAAAATGTTAAGGCTGAAGCTCTTGGACCAACACATCAAGTTTA 2180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2219 GCTTGTGAGACAGTGGGAAAATGTTAAGGCTGAAGCTCTTGGACCAACACATCAAGTTTA 2278
Query 2181 TAGCCTTTCCGAAGTCCTTGATGAATCCATGCTTGTCCAGGTTACTGTTTCTTGGCAAAC 2240
|||||||||||||||||||||||||||||||||||||||| | | | |||||
Sbjct 2279 TAGCCTTTCCGAAGTCCTTGATGAATCCATGCTTGTCCAG-T----G------G-CAAAC 2326
Query 2241 GTTGGCACAAACAGCAAAAGCTAAATCCTGTTATTGGAGATTCGTTTTGCTTCATCTAGA 2300
||||||||||||||| | || ||||||||||||||||| |||||| |||||||||| ||
Sbjct 2327 ATTGGCACAAACAGCAGAGGCGAAATCCTGTTATTGGAGGTTCGTTCTGCTTCATCTTGA 2386
Query 2301 GATTCTACAAGCACACATTTTCCAAGATGGTATCGCTGGTGAGACTGCAGAAATCGAAGC 2360
| || | |||||||| || ||| |||||||||| ||||||||| ||||||||||||||||
Sbjct 2387 GGTTTTGCAAGCACATATATTCGAAGATGGTATTGCTGGTGAGGCTGCAGAAATCGAAGC 2446
Query 2361 CCTTCTAGAGGAAGCAGCAGAATTAGTTGATGAATCTCAGCCCAAAAACGCAAAATATTA 2420
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2447 TCTTCTGGAGGAAGCAGCAGAATTAGTTGATGAATCTCAGCCCAAAAACGCAAAATATTA 2506
Query 2421 TAGCACTTACAAGATCCGCTATACGCTGAAGAAGCAAGAAGATGGATCGTGGAAATTCTG 2480
|||||||||||||||||| |||| |||||||||||||||||||||| ||||||||||||
Sbjct 2507 TAGCACTTACAAGATCCGATATATTCTGAAGAAGCAAGAAGATGGATTGTGGAAATTCTG 2566
Query 2481 CGAAAGCGATATTCAAATACAGAAGTGA 2508
| ||||||||||||||||||||||||||
Sbjct 2567 CCAAAGCGATATTCAAATACAGAAGTGA 2594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124464185583
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5