BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318682
Length=840
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19260.1 | Symbols: LAG1 HOMOLOG 2, LOH2 | LAG1 homologue 2 ... 1363 0.0
> AT3G19260.1 | Symbols: LAG1 HOMOLOG 2, LOH2 | LAG1 homologue
2 | chr3:6669146-6671519 REVERSE LENGTH=1455
Length=1455
Score = 1363 bits (738), Expect = 0.0
Identities = 805/838 (96%), Gaps = 2/838 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGTGTGGCATTTCCAGATTGCTGTCTATTTCGCTTTCGGATTCTTCTTCTTGAGG 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 311 ATGGAGGTCTGGCATTTCCAGATTGCTGTCTATTTCGCTTTCGGATTCTTCTTCTTGAGG 370
Query 61 CTTTTCCTCGATAGATTCGTCTTTCAAAGGATAGCTGTTTGGCTTTTGAGTACCGGTTCT 120
||| |||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 371 CTTGTCCTCGATAGATACGTCTTTCAAAGGATAGCTCTTTGGCTTTTGAGTACTGGTTCT 430
Query 121 TCTCCGGTTAAAATGAATGATGCTACTACTCGGGCAAAAATCGTCAAATGCAAGGAGTCT 180
||||| ||||| ||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 431 GCTCCGATTAAATTGAATGATGCTGCTACTCGGGCAAAAATCGTCAAATGCAAAGAGTCC 490
Query 181 TTGTGGAAATTGTTGTATTACGCTGGTTGTGACTTTTTCGTTCTTCAAGTCGTTTATCAC 240
|||||||||||||||||||| |||| |||||||||||||||||| |||||| ||||||||
Sbjct 491 TTGTGGAAATTGTTGTATTATGCTGCTTGTGACTTTTTCGTTCTACAAGTCATTTATCAC 550
Query 241 GAGCCGTGGGCTAGAGATATCAAACTCTACTTCGACGGTTGGCCAAATCAAGAGTTGAAG 300
||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 551 GAGCCGTGGGCTAGAGATATCAAACTCTACTTCCACGGTTGGCCTAATCAAGAGTTGAAG 610
Query 301 CTTTCAATAAAGCTTTACTATATGTGCCAGTGCGGGTTTTATGTGTATGGTGTGGCTGCG 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 611 CTTTCAATAAAGCTTTACTATATGTGCCAGTGCGGTTTTTATGTGTATGGTGTGGCTGCG 670
Query 361 TTGCTTGCATGGGAGACAAGAAGAAAGGATTTTGCTGTCATGATGTCTCACCATGTAATT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 671 TTGCTTGCATGGGAGACAAGAAGAAAGGATTTTGCTGTCATGATGTCTCACCATGTAATT 730
Query 421 ACAATCATCCTGCTTAGCTACTCCTACTTAACCAGTTTTTTCCGGATTGGAGCAATCATC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 ACAATCATCCTGCTTAGCTACTCCTACTTAACCAGTTTTTTCCGGATTGGAGCAATCATC 790
Query 481 CTAGCCCTTCATGATGCAAGTGACGTGTTTATGGAAACTGCTAAAATTTTCAAGTACTCT 540
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 791 CTAGCCCTTCATGATGCAAGTGATGTCTTTATGGAAACTGCTAAAATTTTCAAGTACTCT 850
Query 541 GAAAAAGAATTTGGAGCAAGTGTGTGTTTTGCACTATTTGCTCTCTCCTGGCTATTGCTA 600
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct 851 GAAAAAGAATTTGGAGCAAGTGTATGTTTTGCATTATTTGCTGTCTCCTGGCTATTGCTA 910
Query 601 CGGTTGATATACTTCCCATTTTGGATCATCTGGGCCACGAGCATTGAACTCCTGGATTAT 660
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 911 CGGTTGATATACTTCCCATTTTGGATCATCAGGGCCACGAGCATTGAACTCCTGGATTAT 970
Query 661 TTGGATATGACATCAGCTGAAGGCACGATC-ATGTACTATTCTTTCAACACAATGTTACT 719
|||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 971 TTGGATATGACATCAGCTGAAGGCAC-ATTGATGTACTATTCTTTCAACACTATGTTACT 1029
Query 720 GATGCTTCTCGTTTTCCACATATATTGGTGGTATCTTATATGTGCCATGATTGTAAGACT 779
||||| || |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1030 AATGCTGCTTGTTTTCCACATATATTGGTGGTATCTCATTTGTGCCATGATTGTAAGACT 1089
Query 780 ACTTAAAAACAGAGGAAAAGTTGGAGAAGACATAAGATCCGATTCAGAGGATGATGAT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1090 ACTTAAAAACAGAGGAAAAGTTGGAGAAGACATAAGATCCGATTCAGAGGATGATGAT 1147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40940829805
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5