BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318692
Length=2178
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19370.1 | Symbols: | Plant protein of unknown function (DU... 2959 0.0
> AT3G19370.1 | Symbols: | Plant protein of unknown function (DUF869)
| chr3:6710754-6713650 FORWARD LENGTH=2436
Length=2436
Score = 2959 bits (1602), Expect = 0.0
Identities = 1827/1939 (94%), Gaps = 2/1939 (0%)
Strand=Plus/Plus
Query 12 AAGACATCTTACAGAATCAATGGAAACAAATCAGTGGCGGTCGAAGAAAAAGATAGAATC 71
||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 147 AAGACATCTTACAGAGTCAATGGAAACAAACCAGTGGCGGTCGAGGAAAAAGATAGAATC 206
Query 72 TGCAGCAGAAACACTCCAAGCTTCTTCTAGAAGAAGCAGAGTACAGGCACGTATGGTTGC 131
|| |||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
Sbjct 207 AGCTGCAGAAACACTCCAAGTTTCTTCTAGAAGAGGCAGAGGACAGGCACGTATGGTTCC 266
Query 132 TCCAGTAAATGGAGTTAGACCCGATAGAGCTCGAAAAAGTCTAAGTGAGAAGCTAGACAC 191
||| |||| |||||||||| |||| |||||||||||||||||||||||||||||||| ||
Sbjct 267 TCCTGTAAGTGGAGTTAGATCCGAGAGAGCTCGAAAAAGTCTAAGTGAGAAGCTAGAGAC 326
Query 192 TGTAGCCTTAAACTCTCCTAAAAAAGATGCTCGTGTGAATCTTTATGGCGACAAAAGTGT 251
|||||| |||||||||||||| |||||||||||||||| |||||||||||| ||||||||
Sbjct 327 TGTAGCTTTAAACTCTCCTAAGAAAGATGCTCGTGTGAGTCTTTATGGCGAGAAAAGTGT 386
Query 252 AGTAGATGAGATTTTCCTTGAAGATGAAGAAATGGGTCTTGAAACTGGTTTGGGGAATAG 311
|||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||| |
Sbjct 387 AGTAGATGAGATTTTCCTAGAAGATGAAGAAATGGGTCATGAAACTGGTTTGAAGAATGG 446
Query 312 TGAGTCATCGCCTTTTTGTGGTGTATCCGACAGGCTTCTGCAGCGAATCGAGCTTCTTGG 371
||||| |||||||||||||||||||| |||| |||||||||||||||||||||||||||
Sbjct 447 AGAGTCGTCGCCTTTTTGTGGTGTATCGGACAAGCTTCTGCAGCGAATCGAGCTTCTTGG 506
Query 372 GAGAGATCACGAGGCAAAGAGGCTTGATAAAAACAATTTCAGGTCAACT-GAAACTATGA 430
|||||| || ||||||| ||| |||||||| ||||| |||||||||| | ||| ||||||
Sbjct 507 GAGAGACCATGAGGCAACGAGACTTGATAACAACAAGTTCAGGTCAA-TCGAATCTATGA 565
Query 431 AAAAGATACAAGAAGAATCTTCAGGTGATGATCTAATTGAGATGAAGACAAAGTTTCAAA 490
|||||| |||||||||||| || ||||||||||| |||| |||||||||||| ||||||
Sbjct 566 AAAAGAGACAAGAAGAATCGGCATGTGATGATCTAGTTGATATGAAGACAAAGATTCAAA 625
Query 491 CTTTAGCTGTGGAGAACTCTCAGCTTAAGAAATCTCTTGTGGCGAAAGAAGAGCTTGCGG 550
| ||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct 626 CGTTAGCTGCGGAGAACACTCAGCTTAAGAAGTCTCTTGTGGCGAAAGAAGAGCTTGCGG 685
Query 551 TAAGTCTACAAGAGCGTAAATTTCAGGTGGAATCAGAATTTGAAGCGTTGATGACTAGAT 610
||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 686 TAAGTCTTCAAGAGCGTAAATTTCAGGTGGAATCAGAATTCGAAGCGTTAATGACTAGAT 745
Query 611 TAGATTCAACGGAGAAAGAAAACGCATTCTTGAGATATGAGTATAATGTTCTTGAGAAGG 670
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
Sbjct 746 TAGATTCAACGGAGAAAGAAAACGCATTCTTGAGATATGAGTATACTGTTCTTGAGAAAG 805
Query 671 ATCTTGAGGTAAAAACAGAGGAAACAGAGCATACTCGTAGGTCTATGGAGCTAACGCATA 730
||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 806 ATCTTCAGGTAAAAACAGAGGAAACAGAGCATACTCGCAGGTCTATGGAGCTAACGCATA 865
Query 731 AACAACAACTTAGGAATGTGAACAAGATTGTTGAGCTTGAAGCTGAATGCCAAAGGTTAA 790
| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 866 AGCAGCAACTTAGGAATGTGAACAAGATTGTTGAGCTTGAAGCTGAATGCCAAAGGTTAA 925
Query 791 GACTTCTGTTTCGAAAGAAGTTTCCAGAGAAGTCTATATCGATGAGGAATGAAGGtgaag 850
||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 926 GACTTCTCTTTCGAAAGAAGTTTCCAGAGAAGTCTATATCTATGAGGAATGAAGGTGAAG 985
Query 851 aaaagaagatggagatgagaagaagaaacgcgaataagagcgatttgatgatgagagatg 910
||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||
Sbjct 986 AAAAGAAGATGGAGATGAGAAGACGAAACGCTAATAAGAGCGATATGATGATGAGAGATG 1045
Query 911 aaGTTCAGAGCAGGAAGCTTAAGTATGATCTGTTGATGGAGCAGATTGGGAATGTTAGGG 970
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 1046 AAGTTCAGAGCAGGAAGCTGAAGTATGATCTTTTGATGGAGCAGATTGGGAATGTTAGGG 1105
Query 971 CAGAGAACAAGAATCTAATGGACATAATTATGAAGAAAAACATGGAGATCAAAGATCTTA 1030
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1106 CAGAGAACAAGAATCTAATGGACATAATTATGAAGAAAAACATTGAGATCAAAGATCTTA 1165
Query 1031 GCCGCGGGCAGAAACCGTTAGAGGCTTCAAGTTTCGATATTCGAAGCGAAAGTAGTGTTA 1090
|||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |
Sbjct 1166 GCCGCGGGCAGAAACCGTTAGAGGCTTCGAGTTTCGATATTCAAAGCGAAAGTAGTGTGA 1225
Query 1091 TTAGCCCTTGTGGTTCGAAGGAGATGAAGTTACTGATGGATGATTTTAATGAGATGGAGA 1150
| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1226 TGAGCCCCTGTGGTTCCAAGGAGATGAAGTTACTGATGGATGATTTTAATGAGATGGAGA 1285
Query 1151 AGTTAGCCATTGTGTGTACTGAGAAAGATCCAAGAGTGGATGATGAAAAGGAAGGATCTT 1210
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1286 AGTTAGCCATTGTGTGTACTGAGAAAGATCCAAGAGTGGATGATGAGAAGGAAGGATCTT 1345
Query 1211 TTGATTGGATTCAAGTTGTTTTGAGCGCTATAACGAAGCAAGAGAGGATATCGAAACGCG 1270
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1346 TTGATTGGATTCAAGTTGTTTTGAGCGCTATAACGAAGCAAGAGAGGATATCGAAACGCG 1405
Query 1271 GTGTTAAAGAACTCTTACAAGACATCAAGATTGCTTTAGGATGTATGGATGAAAATTATA 1330
||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||
Sbjct 1406 GTGTTAAAGAACTCTTACAAGACATTAAGATTGCTTTAGGATGTATGGATGAAAATGATA 1465
Query 1331 ATGCAGCAAGAAACAAAGGTAAAGAAGATCCTCTCTGCATCACATGGAAATCTCCTAGTG 1390
||| || |||||| |||||| |||||||||||||||||||||||||||||||| || |
Sbjct 1466 ATGTAGAAAGAAAGAAAGGTGAAGAAGATCCTCTCTGCATCACATGGAAATCTAATAACG 1525
Query 1391 AATCGGGTCCAATGACGAAGGATGAGATCAAGAGACATTTGGGTCTAACAAAAGCAGATA 1450
|||||||||||||||| ||||||||||||||||||||||||||| | || ||| ||||||
Sbjct 1526 AATCGGGTCCAATGACTAAGGATGAGATCAAGAGACATTTGGGTTTGACGAAATCAGATA 1585
Query 1451 AGGTGGAGAATATTGAATGTGATGAGAAGCAAGAACTGAGAAAGAAGCTTGAGGAATCAG 1510
|||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 1586 AGGTGGAGAAGATTGAATCTGATGAAAAGCAAGAACTGAGAAAGAAGCTTGAGGAATCAG 1645
Query 1511 AGGAGAAGATCAGAAACTTAGAAGCAGAGATCAAAACATTGAGAGAGAGTAAGGAAGCGT 1570
|||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
Sbjct 1646 TGGAGAAGATCAGAAACTTAGAAGCAGAGATGAAAACATTGAGAGAGAATAAGGAAAAGG 1705
Query 1571 TAGAGTCAGAGACGGAAACGGAGAAATCGATGAAGGGAGATCTTGATACAAATCTGAACA 1630
||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 1706 TAGAGGCAGAGATGGAAACGGAGAAATCGATGAAGGAAGATCTTGATACAAAGCTGAACA 1765
Query 1631 TAATAAGAGCTAAGCTCAACGAGACACAGAAGAAGTTGTCTTCTCTTGAAGTAGAACTTG 1690
||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1766 TAACAAGAGCTAACCTCAACGAGACACAGAAGAAGTTGTCTTCTCTTGAAGTAGAATTTG 1825
Query 1691 ATTACAGAAAGAGCTGTTGTGAAGAACTCGAAGGAACTTGCATAGAGCTTCAGCTTCAGC 1750
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1826 ATTACAGAAAGAGCTGTTGTGAAGAACTCGAAGGGACTTGCATCGAGCTTCAGCTTCAGC 1885
Query 1751 TAGAAAGTGTTGAAACGAAGAAATCGACGCAGAGAAACAAAAACGGATGGGATATAGCAA 1810
|||||||||||||||| |||||| |||||||||||||||||||||| |||||||||||||
Sbjct 1886 TAGAAAGTGTTGAAACAAAGAAACCGACGCAGAGAAACAAAAACGGGTGGGATATAGCAA 1945
Query 1811 CAGCTTCTGTGAAGTTATCAGAGTGTCAAGAGACGATTACCAATTTACGGAAGCAACTAA 1870
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 1946 CAGCTTCTGTGAAGTTATCAGAGTGTCAAGAAACGATTACCAGTTTACGGAAGCAACTAA 2005
Query 1871 GAGCGTTATCTACAACAGAAACAAGCAGCACCATGAAATTTCTACACAAAAGATCTTCTC 1930
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2006 GAGCGTTATCTACAACAGAAACAAGCAGCACCATTAAATTTCTACACAAAAGATCTTCTC 2065
Query 1931 TCCGAGAAAATATAGAAGA 1949
|||| |||||||||| |||
Sbjct 2066 TCCGGGAAAATATAGCAGA 2084
Score = 329 bits (178), Expect = 6e-89
Identities = 194/202 (96%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 1977 AGCAGAGGATGATAATAACAGAGTTACTCATGATGATGATGGTAACCATTACAATGCATT 2036
|||||||||||||| |||||||||| |||| |||||||||||||||| |||||| || ||
Sbjct 2079 AGCAGAGGATGATACTAACAGAGTTGCTCAAGATGATGATGGTAACCGTTACAACGCTTT 2138
Query 2037 GATAGTGTACGAACCAGTGAAGGCGAGAGGTGAGAAGATGGAGATGGTACAGAGAAAGAA 2096
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2139 GATCGTGTACGAACCAGTGAAGGCGAGAGGTGAGAAGATGGAGATGGTACCGAGAAAGAA 2198
Query 2097 GCAAGGATTAGGGTTCTTGAAAAAACTGTTGTTCAGGAGGAAAAGAGTGAGCAGCAAGAA 2156
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2199 GCAAGGATTAGGGTTCTTGAAAAAACTGTTGTTCAGGAGGAAAAGAGTGAGCAGCAAGAA 2258
Query 2157 ATGTCTTGCCTTGACTATGTGA 2178
||||||||||||||||||||||
Sbjct 2259 ATGTCTTGCCTTGACTATGTGA 2280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108031572840
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5