BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318695
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19400.1 | Symbols: | Cysteine proteinases superfamily prot... 1029 0.0
AT3G19390.1 | Symbols: | Granulin repeat cysteine protease fam... 616 2e-175
AT1G47128.1 | Symbols: RD21, RD21A | Granulin repeat cysteine p... 145 9e-34
> AT3G19400.1 | Symbols: | Cysteine proteinases superfamily protein
| chr3:6725468-6727000 FORWARD LENGTH=1253
Length=1253
Score = 1029 bits (557), Expect = 0.0
Identities = 695/761 (91%), Gaps = 11/761 (1%)
Strand=Plus/Plus
Query 172 GAACCTAAAGATTTC-ATGAAAGCTGACAGATATTTGTACAAAGAAGGAGATATTTTGCC 230
||| ||||||| ||| ||||| |||| |||||||||||||||||||||||| |||||||
Sbjct 377 GAA-CTAAAGA-TTCGGTGAAAACTGAGAGATATTTGTACAAAGAAGGAGATGTTTTGCC 434
Query 231 TGATGAAATCGATTGGAGAGCGAAAGGTGCAGTTGTACCAGTCAAAGATCAAGGAAACTG 290
||||||| | |||||||||||||| || |||||||| ||||||||||||||||||||||
Sbjct 435 TGATGAAGTAGATTGGAGAGCGAATGGCGCAGTTGTTTCAGTCAAAGATCAAGGAAACTG 494
Query 291 TGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAAGGGATAAACCAGATCAAGAC 350
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 495 TGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAAGGGATCAACCAGATCACTAC 554
Query 351 CGGAGAATTGATATCTTTGTCAGATCAAGAACTCATTGACTGTGACAGAGGCTTTGTTAA 410
|||||| |||||||||||||| || ||||||||| |||||||||||||||| ||||| ||
Sbjct 555 CGGAGAGTTGATATCTTTGTCGGAGCAAGAACTCGTTGACTGTGACAGAGGTTTTGTCAA 614
Query 411 CGCTGGATGTGAAGGAGGTCTCATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGG 470
|||||||||||| |||||| ||||| |||||||||||||||||||||| || ||||||||
Sbjct 615 CGCTGGATGTGATGGAGGTATCATGAACTATGCTTTTGAGTTCATTATGAAAAATGGTGG 674
Query 471 TATTGAGACAGATCAAGATTACCCTTATACCGCCACCGATCTTGGCGTGTGCAATGCCGA 530
||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||| ||
Sbjct 675 TATTGAGACAGATCAAGATTACCCTTATAACGCCAACGATCTTGGCTTGTGCAATGCAGA 734
Query 531 TAAGAAGAACAACACTCGTGTTGTTA-AGATCGATGGTTACGA-GTATGTTGCTCAAA-A 587
|||||| ||||| ||||||||||||| | || |||||||| || | ||||| || | | |
Sbjct 735 TAAGAATAACAATACTCGTGTTGTTACA-ATTGATGGTTATGAAG-ATGTTCCT-AGAGA 791
Query 588 CGATGAGAAGTCTTTGAAGAAAG-CTGTTGCTCATCAACCTGTTGGTGTTGCCATTGAAG 646
|||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||||||
Sbjct 792 CGATGAGAAGTCTTTGAA-AAAGGCTGTTGCTCATCAACCTGTTAGTGTTGCTATTGAAG 850
Query 647 CCAGTAGCCAAGCTTTCAAGCTTTACAAATCCGGTGTGTTTACAGGAACATGTGGAATAT 706
| ||||||||||||||| |||||||||||||||||||| | |||||||||||||||||||
Sbjct 851 CTAGTAGCCAAGCTTTCCAGCTTTACAAATCCGGTGTGATGACAGGAACATGTGGAATAT 910
Query 707 ATTTGGACCATGGTGTGGTAGTGGTTGGGTATGGAACCTCAAGTGGTGAAGATTACTGGA 766
||||||||||||||| ||||||||||| |||||| || |||||||||||||||| ||||
Sbjct 911 CTTTGGACCATGGTGTAGTAGTGGTTGGATATGGATCCACAAGTGGTGAAGATTATTGGA 970
Query 767 TCATTCGTAATTCATGGGGATTGAATTGGGGAGATAACGGTTATGTTAAGCTCCAACGTA 826
||||||| ||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 971 TCATTCGCAATTCATGGGGGTTGAATTGGGGAGATAGCGGTTACGTTAAGCTCCAACGTA 1030
Query 827 ACATCGATGATTCATTTGGGAAATGCGGTGTAGCAATGATGCCTTCTTACCCAACCAAAT 886
||||||||||| ||||||||||||| ||| |||||||||||||||||||||| |||||||
Sbjct 1031 ACATCGATGATCCATTTGGGAAATGTGGTATAGCAATGATGCCTTCTTACCCGACCAAAT 1090
Query 887 CATCATTCCCATCGTCATTTGATTTTTTGTCTGAGATTTGA 927
||||||||||||||||||||||||| |||||||||||||||
Sbjct 1091 CATCATTCCCATCGTCATTTGATTTGTTGTCTGAGATTTGA 1131
Score = 231 bits (125), Expect = 7e-60
Identities = 155/170 (91%), Gaps = 0/170 (0%)
Strand=Plus/Plus
Query 1 ATGTACGAGCGATGGCTCGTGGAGAATCGGAAGAACTATAATGGTCTTGGAGAGAAAGAG 60
|||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 169 ATGTACGAGCAATGGCTTGTGGAGAATCGAAAGAACTATAATGGTCTTGGAGAGAAAGAG 228
Query 61 AGACGATGCAAGATCTTCAAAGAAAACTTGAAGTTCATAGACGAACACAATTCTCTTCCG 120
||||||| ||||||||||||||| ||||||||||| | || |||||||||||| |||||
Sbjct 229 AGACGATTCAAGATCTTCAAAGACAACTTGAAGTTTGTCGATGAACACAATTCTGTTCCG 288
Query 121 AATCAGACTTTTGAAGTCGGGTTGACCCGGTTCGCAGATCTAACAAATGA 170
||| |||||||||||| ||||||||| ||||||| ||||||||||||||
Sbjct 289 GATCGGACTTTTGAAGTAGGGTTGACCAGGTTCGCTGATCTAACAAATGA 338
> AT3G19390.1 | Symbols: | Granulin repeat cysteine protease family
protein | chr3:6722989-6725027 FORWARD LENGTH=1653
Length=1653
Score = 616 bits (333), Expect = 2e-175
Identities = 580/698 (83%), Gaps = 22/698 (3%)
Strand=Plus/Plus
Query 202 TATTTGTACAAAGAAGGAGATATTTTGCCTGATGAAATCGATTGGAGAGCGAAAGGTGCA 261
|||||||| || | ||||||| || ||||||| |||||||||||||| ||||||||
Sbjct 396 TATTTGTATAAGGTTGGAGATAGCTTACCTGATGCTATCGATTGGAGAGCTAAAGGTGCT 455
Query 262 GTTGTA-CCAGTCAAAGATCAAGGAAACTGTGGAAGTTGTTGGGCGTTTTCTGCGGTTGG 320
||| | |||||||||||||||||| |||||||||||||||||||||||| ||| ||||
Sbjct 456 GTT-AATCCAGTCAAAGATCAAGGATCCTGTGGAAGTTGTTGGGCGTTTTCCGCGATTGG 514
Query 321 AGCAGTGGAAGGGATAAACCAGATCAAGACCGGAGAATTGATATCTTTGTCAGATCAAGA 380
||| || ||||| ||||| ||||| ||||| ||||| |||||||||||||| || |||||
Sbjct 515 AGCGGTTGAAGGTATAAATCAGATTAAGACAGGAGAGTTGATATCTTTGTCTGAGCAAGA 574
Query 381 ACTCATTGACTGTGACAGAGGCTTTGTTAACGCTGGATGTGAAGGAGGTCTCATGGACTA 440
||| |||| ||||||| | | || || | |||||||| |||||||| ||||| ||
Sbjct 575 ACTTGTTGATTGTGACACAAG--TT-ACAATGATGGATGTGGTGGAGGTCTTATGGATTA 631
Query 441 TGCTTTTGAGTTCATTA-TCAAGAATGGTGGTATTGAGACAGATCAAGATTACCCTTATA 499
||||||| ||||||||| | || || ||||||||||| ||||| ||||||| |||||||
Sbjct 632 TGCTTTTAAGTTCATTATTGAA-AACGGTGGTATTGATACAGAGGAAGATTATCCTTATA 690
Query 500 CCGCCACCGATCTTGGCGTGTGCAATGCCGATAAGAAGAACAACACTCGTGTTGTTAAGA 559
|| || ||| || |||||||||| | ||||||||| |||||||||||||||| |
Sbjct 691 TTGCAACTGATGTTAACGTGTGCAATTCTGATAAGAAG---AACACTCGTGTTGTTACCA 747
Query 560 TCGATGGTTACGAGTATGTTGCTCAAAACGATGAGAAGTCTTTGAAGAAAGCTGTTGCTC 619
|||||||||| ||| ||||| |||||||||||||||||||||||||||| ||| |||||
Sbjct 748 TCGATGGTTATGAGGATGTTCCTCAAAACGATGAGAAGTCTTTGAAGAAGGCTCTTGCTA 807
Query 620 ATCAACCTGTTGGTGTTGCCATTGAAGCCAGTAGCCA-AGCTTTCAAGCTTTACAAATCC 678
|||||||| || |||||||||||||||| || || | ||||||| ||||||||| |||
Sbjct 808 ATCAACCTATTAGTGTTGCCATTGAAGCTGGTGGC-AGAGCTTTCCAGCTTTACACATCT 866
Query 679 GGTGTGTTTACAGGAACATGTGGAATATATTTGGACCATGGTGTGGTAG-TGGTTGGG-T 736
||||||||||||||||||||||||| || ||||||||||||||| |||| || | ||| |
Sbjct 867 GGTGTGTTTACAGGAACATGTGGAACATCTTTGGACCATGGTGTTGTAGCTG-T-GGGAT 924
Query 737 ATGGAACCTCAAG-TGGTGAAGATTACTGGATCATTCGTAATTCATGGGGATTGAATTGG 795
| ||| | ||| |||| |||| |||||||| ||||||| |||||||||| || |||
Sbjct 925 ACGGATCAG-AAGGTGGTCAAGACTACTGGATTGTTCGTAACTCATGGGGATCAAACTGG 983
Query 796 GGAGATAA-CGGTTA-TGTTAAGCTCCAACGTAACATCGATGATTCATTTGGGAAATGCG 853
||||| || ||| || | |||||||| ||||||||||| | || |||| ||||||||||
Sbjct 984 GGAGA-AAGCGGATACT-TTAAGCTCGAACGTAACATCAAAGAGTCATCAGGGAAATGCG 1041
Query 854 GTGTAGCAATGATGCCTTCTTACCCAACCAAATCATCA 891
|||| || |||||| |||||||||| ||||||||||||
Sbjct 1042 GTGTGGCGATGATGGCTTCTTACCCTACCAAATCATCA 1079
> AT1G47128.1 | Symbols: RD21, RD21A | Granulin repeat cysteine
protease family protein | chr1:17282825-17285670 REVERSE LENGTH=1764
Length=1764
Score = 145 bits (78), Expect = 9e-34
Identities = 183/232 (79%), Gaps = 13/232 (6%)
Strand=Plus/Plus
Query 271 GTCAAAGATCAAGGAAACTGTGGAAGTTGTTGGGCGTTTTCTGCGGTTGGAGCAGTGGAA 330
||||||||||| || || || ||||||||||||||||| | |||||||||||| |
Sbjct 515 GTCAAAGATCAGGGTGGTTGCGGGAGTTGTTGGGCGTTTTCAACCATTGGAGCAGTGG-A 573
Query 331 GGG-ATAAACCAGATC-AAGACCGGAGAATTGATATCTTTGTCAGATCAAGAACTCATTG 388
||| |||||||||||| | |||||||| | ||| | ||||| || ||||| | | |
Sbjct 574 GGGAATAAACCAGATCGTA-ACCGGAGACCTAATAACCTTGTCTGAACAAGAGTTGGTCG 632
Query 389 ACTGTGACAGAGGCTTTGT-TAACGCTGGATGTGAA-GGAGGTCTCATGGACTATGCTTT 446
| |||||| | ||| | |||| || ||| || |||||||| ||||||||||||||
Sbjct 633 ATTGTGAC--A--CTTCATACAACGAAGGTTGT-AACGGAGGTCTTATGGACTATGCTTT 687
Query 447 TGAGTTCATTATCAAGAATGGTGGTATTGAGACAGATCAA-GATTACCCTTA 497
|||||||||||||||||||||||| || || ||||| ||| ||||| |||||
Sbjct 688 TGAGTTCATTATCAAGAATGGTGGAATCGATACAGA-CAAAGATTATCCTTA 738
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5