BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318699
Length=1434
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19440.1 | Symbols: | Pseudouridine synthase family protein... 2244 0.0
> AT3G19440.1 | Symbols: | Pseudouridine synthase family protein
| chr3:6740695-6743253 FORWARD LENGTH=1638
Length=1638
Score = 2244 bits (1215), Expect = 0.0
Identities = 1363/1436 (95%), Gaps = 4/1436 (0%)
Strand=Plus/Plus
Query 1 ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTCCAATCC-CAATCGCC 59
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 84 ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTC-ATCGCC 142
Query 60 TACTATCTCCGCCTTCAAGGATCCAACCAAATCCTTGTCTGCAGCGGCTCATCACTGTAG 119
|||||||| |||||||| ||||||||||| | |||||||| ||||||||||| | ||
Sbjct 143 AACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTAC 202
Query 120 TCGCAGCTACAGTACAGCTCAGACCGATGATTCGAGAGGGAATTGGCTAACTTTACCTCC 179
|||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 203 TCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCC 262
Query 180 TTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 263 TTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTC 322
Query 240 CGTCAAAGCTTCAACGGATAACTCTAAAACGACGGCGCTTAGGTGGATTCTTCGCTGTCG 299
|||||| |||||||||| ||||| ||||||||||||||||||||||||||||| |||||
Sbjct 323 TGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCG 382
Query 300 TCCAGATTTACCCAGGACTCTCGTTCAGAAACTCTTCCGTTTAAGACAGGTGAGAAGACA 359
||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| |
Sbjct 383 TCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGA 442
Query 360 AATGTCTCTGAGTGTTGATGGTCATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGC 419
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 443 AATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGC 502
Query 420 TAAGGAATCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTGTCGGTTGACAATGATAC 479
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 503 TAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATAC 562
Query 480 GCCGCCGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGAAGAAGAACGCAAATT 539
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 563 GCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATT 622
Query 540 TGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCTATTATTGTTCTGAATAAACCTCATGG 599
|||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||
Sbjct 623 CGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGG 682
Query 600 TTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATCGATGAGCTTGCTGCCACTTG 659
||||||||||||||||||||||||||||||||||||||| ||||| || |||||| ||||
Sbjct 683 TTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTG 742
Query 660 CTTGACATTTGATAAATCAGAATCTCCCCGGCTGGTGCACCGACTTGACAGAGACTGTAG 719
||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 743 CTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAG 802
Query 720 TGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 803 TGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCG 862
Query 780 CGAGAAAACATGTGGTGCATCTGCATATGGTGTCAAAAAGAACATAAAATCCTTGAAAAG 839
||||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 863 AGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAG 922
Query 840 AAAATATATGGCACTTGTGATCGGGTGTCCAAGACGTCAAAAGGGACAGATTTCAGCGCC 899
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 923 AAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCC 982
Query 900 ACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGATCGTATCACTGTTAATGACAATGG 959
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 983 ACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGG 1042
Query 960 AGAACTCGTTTCTACTCAGCATGCTATCACTGAATACAAAGTAATTGAATCTTCACCACA 1019
|||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||
Sbjct 1043 AGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACA 1102
Query 1020 TGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACA 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1103 TGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACA 1162
Query 1080 CTGCGCAGAAGTTCTAGGAACACCAATACTCGGGGACTACAAATACGGTTGGCAAGCTCA 1139
|||||| ||||| ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 1163 CTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCA 1222
Query 1140 TAAAGCCCGGGAACCTTTTGTCTCTTCTGAAACCACCCCGACCAAGCCATCATCATCTCC 1199
|||||||||||||||||||||||||||||||| || ||| ||||||| ||||||||||||
Sbjct 1223 TAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCC 1282
Query 1200 TTTTGGCCTTG-ATCTAGACGGTGGAGATGTCTCTTCAAAACAGCCACACCTTCATCTCC 1258
|||||| ||| |||| || ||||||||||||||||| ||||||||||||||||||||||
Sbjct 1283 TTTTGGA-TTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCC 1341
Query 1259 ATTCAAAGCAAATCGATCTGCCAAACATATCTCAGCTCTTGGAGAAAATGCAGGTTTCTT 1318
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||
Sbjct 1342 ATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTT 1401
Query 1319 CAGATTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCACCATTGCCTAGTCATA 1378
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1402 CAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATA 1461
Query 1379 TGCAGCTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG 1434
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 TGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG 1517
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70682367360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5