BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318699 Length=1434 Score E Sequences producing significant alignments: (Bits) Value AT3G19440.1 | Symbols: | Pseudouridine synthase family protein... 2244 0.0 > AT3G19440.1 | Symbols: | Pseudouridine synthase family protein | chr3:6740695-6743253 FORWARD LENGTH=1638 Length=1638 Score = 2244 bits (1215), Expect = 0.0 Identities = 1363/1436 (95%), Gaps = 4/1436 (0%) Strand=Plus/Plus Query 1 ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTCCAATCC-CAATCGCC 59 |||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||| Sbjct 84 ATGGCCAAATGGAGACTTGCGACTGCGACGCTCCGTCGACAACTTCAATCCTC-ATCGCC 142 Query 60 TACTATCTCCGCCTTCAAGGATCCAACCAAATCCTTGTCTGCAGCGGCTCATCACTGTAG 119 |||||||| |||||||| ||||||||||| | |||||||| ||||||||||| | || Sbjct 143 AACTATCTCTACCTTCAAGAATCCAACCAAAGCATTGTCTGCGGCGGCTCATCAGTCTAC 202 Query 120 TCGCAGCTACAGTACAGCTCAGACCGATGATTCGAGAGGGAATTGGCTAACTTTACCTCC 179 |||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 203 TCGCAGCTACAGTACAACTCAGACCGATGATTCGAGAGGGAAATGGTTAACTTTACCTCC 262 Query 180 TTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTC 239 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 263 TTTTTCTCCCACCATCGATGGCACCGCCGTTGGAAAGGATCTCCTTTCCGACGGAGACTC 322 Query 240 CGTCAAAGCTTCAACGGATAACTCTAAAACGACGGCGCTTAGGTGGATTCTTCGCTGTCG 299 |||||| |||||||||| ||||| ||||||||||||||||||||||||||||| ||||| Sbjct 323 TGTCAAATCTTCAACGGACAACTCAAAAACGACGGCGCTTAGGTGGATTCTTCGTTGTCG 382 Query 300 TCCAGATTTACCCAGGACTCTCGTTCAGAAACTCTTCCGTTTAAGACAGGTGAGAAGACA 359 ||| ||||||||||| ||||||||||||||||||||||| ||||||||||| |||||| | Sbjct 383 TCCCGATTTACCCAGAACTCTCGTTCAGAAACTCTTCCGCTTAAGACAGGTTAGAAGAGA 442 Query 360 AATGTCTCTGAGTGTTGATGGTCATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGC 419 ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 443 AATGTCTATGAGTGTTGATGGTGATGAACTACAAAGAAGCCAGCTTAAAAGGGTGGCAGC 502 Query 420 TAAGGAATCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTGTCGGTTGACAATGATAC 479 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 503 TAAGGAGTCCTTGAATGTAGGAGATAGAATTTACCTTCCTTTATCGGTTGACAATGATAC 562 Query 480 GCCGCCGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGAAGAAGAACGCAAATT 539 ||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 563 GCCGCAGACGCCACCTGCTAAGAAAGAAAGCTTTCAATGTAGTGATGAAGAACGCAAATT 622 Query 540 TGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCTATTATTGTTCTGAATAAACCTCATGG 599 |||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 623 CGTTTGCAGTTTGGTGTTGTATAAGGATCCAGCCATTATTGTTTTGAATAAACCTCATGG 682 Query 600 TTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATCGATGAGCTTGCTGCCACTTG 659 ||||||||||||||||||||||||||||||||||||||| ||||| || |||||| |||| Sbjct 683 TTTGGCTGTTCAAGGTGGGAGTGGGATCAAAACCAGTATTGATGAACTCGCTGCCTCTTG 742 Query 660 CTTGACATTTGATAAATCAGAATCTCCCCGGCTGGTGCACCGACTTGACAGAGACTGTAG 719 ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 743 CTTGAAATTTGATAAATCAGAATCTCCCCGGCTGGTGCACAGACTTGACAGAGACTGTAG 802 Query 720 TGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCG 779 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 803 TGGACTTTTGGTGTTGGCAAGAACACAGACGGCTGCAACAGTTCTTCATTCCATATTCCG 862 Query 780 CGAGAAAACATGTGGTGCATCTGCATATGGTGTCAAAAAGAACATAAAATCCTTGAAAAG 839 ||||||||| ||||||||| ||||||||||||||||||||| |||||||||||||||| Sbjct 863 AGAGAAAACAACTGGTGCATCCGCATATGGTGTCAAAAAGAACGTAAAATCCTTGAAAAG 922 Query 840 AAAATATATGGCACTTGTGATCGGGTGTCCAAGACGTCAAAAGGGACAGATTTCAGCGCC 899 ||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| Sbjct 923 AAAATATATGGCACTTGTGATCGGGTGTCCACCACGTCAAAGGGGACAGATTTCAGCGCC 982 Query 900 ACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGATCGTATCACTGTTAATGACAATGG 959 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 983 ACTCAGAAAGGTGGTTGTGGATGATGGAAAATCTGAACGTATCACTGTTAATGACAATGG 1042 Query 960 AGAACTCGTTTCTACTCAGCATGCTATCACTGAATACAAAGTAATTGAATCTTCACCACA 1019 |||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||| Sbjct 1043 AGAACTCGTTTCTACTCAGCATGCTATCACCGAATACCGAGTGATTGAATCTTCACCACA 1102 Query 1020 TGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACA 1079 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1103 TGGATACACATGGCTTGAGCTTCGCCCTTTAACCGGGAGAAAACATCAGCTTCGTGTACA 1162 Query 1080 CTGCGCAGAAGTTCTAGGAACACCAATACTCGGGGACTACAAATACGGTTGGCAAGCTCA 1139 |||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 1163 CTGCGCTGAAGTGCTAGGAACACCGATAGTCGGGGACTACAAATACGGTTGGCAAGCTCA 1222 Query 1140 TAAAGCCCGGGAACCTTTTGTCTCTTCTGAAACCACCCCGACCAAGCCATCATCATCTCC 1199 |||||||||||||||||||||||||||||||| || ||| ||||||| |||||||||||| Sbjct 1223 TAAAGCCCGGGAACCTTTTGTCTCTTCTGAAAACAACCCAACCAAGCAATCATCATCTCC 1282 Query 1200 TTTTGGCCTTG-ATCTAGACGGTGGAGATGTCTCTTCAAAACAGCCACACCTTCATCTCC 1258 |||||| ||| |||| || ||||||||||||||||| |||||||||||||||||||||| Sbjct 1283 TTTTGGA-TTGGATCTGGATGGTGGAGATGTCTCTTCGAAACAGCCACACCTTCATCTCC 1341 Query 1259 ATTCAAAGCAAATCGATCTGCCAAACATATCTCAGCTCTTGGAGAAAATGCAGGTTTCTT 1318 ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| Sbjct 1342 ATTCAAAGCAAATCGATCTGCCAAACATATCACAGCTCTTGGAGAAAATGCAGGTCTCTT 1401 Query 1319 CAGATTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCACCATTGCCTAGTCATA 1378 |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1402 CAGACTCTGATATTTCGGATCTCGATAGCCTTAAATTCGATGCTCCATTGCCTAGTCATA 1461 Query 1379 TGCAGCTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG 1434 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1462 TGCAACTAAGCTTTAATTTGTTGAAATCTAGAGTCGAAACTTGTGACAAAAATTAG 1517 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 70682367360 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5