BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318716
Length=2598
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19620.1 | Symbols: | Glycosyl hydrolase family protein | c... 2115 0.0
AT3G19615.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 462 6e-129
> AT3G19620.1 | Symbols: | Glycosyl hydrolase family protein |
chr3:6815613-6818308 REVERSE LENGTH=2346
Length=2346
Score = 2115 bits (1145), Expect = 0.0
Identities = 1307/1387 (94%), Gaps = 3/1387 (0%)
Strand=Plus/Plus
Query 916 AAGACACGTTTGAACATGAACTGTGGAGATTTTCTAGGTAAGTACACAGAGAATGCAGTG 975
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 950 AAG-CAGGTTTGAACATGAACTGTGGAGATTTTCTAGGTAAGTACACAGAGAATGCAGTG 1008
Query 976 AAGCTTAAAAAACTGAACGGATCAGAGGTTGATGAAGCGCTGATTTACAACTACATTGTT 1035
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1009 AAGCTTAAGAAACTGAACGGATCAGATGTTGATGAAGCGCTGATTTACAACTACATTGTT 1068
Query 1036 CTCATGAGGCTCGGATTCTTTGACGGAGATCCAAAATCACTTCCCTTTGGTCAA-CTTGG 1094
|||||||||||||||||||| || ||||||||||| || ||||| |||||| || |||||
Sbjct 1069 CTCATGAGGCTCGGATTCTTCGATGGAGATCCAAAGTCGCTTCCTTTTGGT-AATCTTGG 1127
Query 1095 ACCGTCTGATGTCTGCAGCAAGGACCATCAAATGCTTGCGCTAGAAGCAGCAAAACAGGG 1154
||||||||||| ||||||||||| ||||||||||||||| ||||||| |||||||||||
Sbjct 1128 TCCGTCTGATGTTTGCAGCAAGGATCATCAAATGCTTGCGTTAGAAGCCGCAAAACAGGG 1187
Query 1155 GATTGTACTGCTTGAGAACAGAGGAGATCTTCCGTTATCGAAGACCGCGGTTAAGAAAAT 1214
|||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 1188 GATTGTTCTGCTTGAGAACAGAGGAGATCTTCCGTTACCGAAGACCACGGTTAAGAAACT 1247
Query 1215 AGCAGTTATAGGGCCAAATGCAAATGCTACAAAGGTAATGATTAGTAACTATGCGGGTGT 1274
|| |||||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 1248 TGCGGTTATAGGGCCAAATGCAAACGCTACAAAGGTCATGATTAGTAACTACGCAGGTGT 1307
Query 1275 TCCTTGTAAGTACACAAGCCCTTTACAAGGGTTGCAAAAGTATGTACCGGAAAAGGTTGT 1334
|| |||||||||||||||||| |||||||| |||||||||||||||||||||| ||||
Sbjct 1308 ACCCTGTAAGTACACAAGCCCTATACAAGGGCTGCAAAAGTATGTACCGGAAAAAATTGT 1367
Query 1335 TTACGAACCGGGGTGTAAAGATGTCAAATGTGGTGAGCAAACACTAATTTCAGCAGCGGT 1394
|||||| || |||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1368 TTACGAGCCAGGGTGTAAAGATGTCAAATGTGGTGACCAAACACTGATTTCAGCAGCGGT 1427
Query 1395 CAAGGCGGTTTCAGAGGCTGATGTGACAGTTTTGGTGGTTGGATTGGATCAGACGGTAGA 1454
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1428 CAAGGCGGTTTCAGAGGCTGATGTGACGGTTTTGGTGGTTGGATTGGATCAGACGGTAGA 1487
Query 1455 GGCAGAGGGTCTTGACCGGGTAAACTTAACCCTTCCGGGTTACCAAGAAAAGCTGGTGAG 1514
|||||||||||||||||| || ||| |||||||||||||||| |||||||||||||||||
Sbjct 1488 GGCAGAGGGTCTTGACCGTGTTAACCTAACCCTTCCGGGTTATCAAGAAAAGCTGGTGAG 1547
Query 1515 AGATGTGGCTAATGCTGCaaaaaaaaCTGTTGTGTTGGTCATAATGTCAGCCGGACCTAT 1574
||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1548 AGATGTGGCAAATGCTGCAAAGAAAACTGTTGTTTTGGTCATAATGTCAGCCGGACCTAT 1607
Query 1575 AGATATCTCATTCGCCAAGAATCTGAGCACGATTAGCGCGGTTTTATGGGTCGGATATCC 1634
|||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct 1608 AGATATCTCATTCGCCAAGAATCTGAGCACGATTCGGGCTGTTTTATGGGTCGGATATCC 1667
Query 1635 TGGTGAAGCTGGAGGAGACGCTATAGCTCAAGTCATCTTTGGTGACTACAATCCTTCTGG 1694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1668 TGGTGAAGCTGGAGGAGACGCTATAGCTCAAGTCATCTTTGGTGACTACAATCCTTCTGG 1727
Query 1695 GAGACTACCAGAGACATGGTACTCACAAGAGTTTGCGGATAAGGTTGCAATGACGGACAT 1754
|||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||
Sbjct 1728 GAGACTACCAGAGACATGGTACCCACAAGAGTTTGCGGATAAGGTTGCAATGACAGATAT 1787
Query 1755 GAACATGCGGCCTAACTCAACCTCTGGTTTTCCTGGAAGATCTTACAGATTCTACACAGG 1814
||||||| | |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1788 GAACATGAGACCTAACTCAACCTCTGGTTTCCCTGGAAGATCTTACAGATTCTACACAGG 1847
Query 1815 GAAACCGATTTACAAATTCGGATACGGGCTTAGCTACTCTTCTTTCTCGACTTTCGTTCT 1874
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1848 GAAACCGATTTACAAATTCGGATACGGGCTTAGCTACTCTTCTTTCTCGACTTTTGTTCT 1907
Query 1875 CTCAGCTCCATCGATCATACACATCAAAACCAATCCAATCTTGAACCTAAACAAAACAAC 1934
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 1908 CTCAGCTCCATCGATCATACACATCAAAACCAATCCAATCATGAACCTAAACAAGACAAC 1967
Query 1935 CTCTATCGATATCTCCACCGTAAATTGCCACGATCTCAAGATCCGGATCGTTATCGGGGT 1994
|||| | ||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 1968 CTCTGTGGATATCTCCACAGTAAATTGCCACGATCTCAAGATCCGGATAGTTATCGGGGT 2027
Query 1995 CAAGAACCGCGGGCAACGGTCTGGAAGCCACGTGGTGCTCGTGTTCTGGAAACCGCCTAA 2054
|||||||| ||||| ||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 2028 CAAGAACCACGGGCTACGGTCTGGTAGCCACGTGGTGCTCGTGTTCTGGAAACCACCAAA 2087
Query 2055 GTGTTCAAAAACTCTGGTGGGTGCTGGCGTGCCACAGACGCAATTGGTAGGATTTGAGAG 2114
||||||||| |||||||||||| ||||||||||| ||||||| ||||||| ||||||||
Sbjct 2088 GTGTTCAAAGTCTCTGGTGGGTGGTGGCGTGCCACTGACGCAACTGGTAGGGTTTGAGAG 2147
Query 2115 AGTAGAAGTTGGGAGAAGCATGACAGAGAAAGTTATCGTTGAGTTTGATGTCTGCAAAGC 2174
||||||||||||||||||||||||||||||| ||| |||||| |||||||||||||||||
Sbjct 2148 AGTAGAAGTTGGGAGAAGCATGACAGAGAAATTTACCGTTGATTTTGATGTCTGCAAAGC 2207
Query 2175 ACTTAGCCTTGTGGATACTCACGGTAAAAGGAAACTAGTCACCGGACACCACACGCTTGT 2234
|||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 2208 ACTTAGCCTTGTGGATACTCACGGGAAAAGAAAACTAGTCACCGGACACCACAAGCTTGT 2267
Query 2235 TATTGGTTCTAACAGTGATCAACAAATCTATCATCATCTCAACGTTAGATTGGCCGGAGA 2294
|||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2268 TATTGGATCCAACAGTGATCAACAAATCTATCATCACCTCAACGTTAGATTGGCCGGAGA 2327
Query 2295 TTCAACG 2301
|||||||
Sbjct 2328 TTCAACG 2334
Score = 1380 bits (747), Expect = 0.0
Identities = 868/927 (94%), Gaps = 6/927 (1%)
Strand=Plus/Plus
Query 1 ATGAGT-GTAGGAAGATTTGTGAGTGTCTCTCTGCTAAT-AGCAGCTCTAGTTTCATCAC 58
|||||| || ||||||||||| || ||||||||||||| | |||||||||||||||||
Sbjct 1 ATGAGTATTA-GAAGATTTGTGCGTCTCTCTCTGCTAATCA-TAGCTCTAGTTTCATCAC 58
Query 59 TGTGCGAGTCTCAAAAGAACTTTGCGTGTGACAGGAA-TGACCCTGCGACGGCTAAGTAT 117
| ||||||||||||||||||||||||||||||| || || ||| |||||||||||||||
Sbjct 59 TTTGCGAGTCTCAAAAGAACTTTGCGTGTGACA-TAAGTGCCCCAGCGACGGCTAAGTAT 117
Query 118 GGTTTCTGCAACGTCTCGTTGTCGTATGAAGCCCGTGCCAAAGATTTGGTCTCACGTCTC 177
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 118 GGTTTCTGCAACGTCTCATTGTCGTATGAAGCACGTGCCAAAGATTTGGTCTCACGTCTC 177
Query 178 TCCCTTAAGGAAAAGGTCCCGCAACTCGTAAACAAAGCCACGGGAGTTTCAAGGCTCGGT 237
|||||||||||||| |||| ||||||||||||||||||||| |||||| |||||||||||
Sbjct 178 TCCCTTAAGGAAAAAGTCCAGCAACTCGTAAACAAAGCCACAGGAGTTCCAAGGCTCGGT 237
Query 238 GTTCCTCCGTACGAGTGGTGGTCAGAAGCTCTCCACGGCGTCTCCGACGTTGGACCAGGG 297
||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 238 GTTCCGCCGTACGAGTGGTGGTCGGAAGCTCTCCATGGCGTCTCCGACGTTGGACCAGGG 297
Query 298 GTGCGTTTCAACGGGACGGTGCCTGGAGCGACGAGTTTCCCGGCGACGATATTAACGGCA 357
|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 298 GTGCATTTCAACGGGACGGTGCCTGGAGCGACGAGTTTCCCGGCGACAATATTAACGGCG 357
Query 358 GCGAGCTTTAACACCTCGTTGTGGTTAAAAATGGGAGAAGTGGTTTCTACGGAGGCTCGA 417
|| ||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||||
Sbjct 358 GCTAGCTTTAACACATCGTTGTGGCTAAAAATGGGAGAAGTGGTATCGACGGAGGCTCGA 417
Query 418 GCGATGCACAACGTAGGACTAGCTGGACTTACCTATTGGAGTCCCAACGTTAACGTCTTT 477
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 418 GCGATGCACAACGTAGGACTAGCTGGACTCACCTATTGGAGTCCCAACGTTAACGTCTTC 477
Query 478 AGAGATCCAAGGTGGGGTCGTGGCCAAGAGACACCAGGAGAGGACCCTCTCGTTGTTTCA 537
|||||||| || |||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 478 AGAGATCCGAGATGGGGTCGAGGCCAAGAGACACCAGGAGAGGATCCTCTCGTTGTTTCG 537
Query 538 AAGTACGCCGTGAATTACGTCAAGGGCTTACAAGACGTTCAGGACGCAGGAAAATCACGG 597
|||||||| ||||| ||||| |||||||||||||||||||| ||||| || |||||||||
Sbjct 538 AAGTACGCTGTGAACTACGTTAAGGGCTTACAAGACGTTCACGACGCCGGTAAATCACGG 597
Query 598 CGGCTTAAGGTTTCGAGTTGTTGCAAGCATTACACTGCTTACGATCTTGATAACTGGAAA 657
||||| |||||||| || ||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 598 CGGCTAAAGGTTTCAAGCTGTTGCAAGCATTACACAGCTTATGATCTTGATAACTGGAAA 657
Query 658 GGCATCGATAGATTCCACTTCGACGCCAAGGTAACGAAGCAAGACTTGGAAGACACGTAT 717
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 658 GGCATCGATAGATTCCACTTTGATGCCAAGGTAACGAAGCAAGACTTGGAAGACACGTAT 717
Query 718 CAGCCGCCATTCAAGAGCTGCGTAGAGGAAGGAGATGTGAGCAGTGTAATGTGTTCTTAC 777
||| ||||||||||||| || ||||||||||||||||||||||| |||||||||||||||
Sbjct 718 CAGACGCCATTCAAGAGTTGTGTAGAGGAAGGAGATGTGAGCAGCGTAATGTGTTCTTAC 777
Query 778 AACAGAGTTAATGGCATCCCAACTTGTGCAGACCCTAATCTTCTTCGTGGAGTTATCCGT 837
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AACAGAGTTAATGGTATCCCAACTTGTGCAGACCCTAATCTTCTTCGTGGAGTTATCCGT 837
Query 838 GGCCAATGGCGTCTTGACGGGTACATCGTTTCGGATTGTGATTCTATCCAGGTCTATTTC 897
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 838 GGCCAATGGCGTCTTGACGGGTACATAGTTTCGGATTGTGATTCCATCCAGGTCTATTTC 897
Query 898 GACGACATTCATTACACCAAGACACGT 924
||||||||||||||||||||||||||
Sbjct 898 AACGACATTCATTACACCAAGACACGT 924
> AT3G19615.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; Has 10 Blast hits
to 10 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 10; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:6814966-6815403 REVERSE
LENGTH=438
Length=438
Score = 462 bits (250), Expect = 6e-129
Identities = 283/299 (95%), Gaps = 2/299 (1%)
Strand=Plus/Plus
Query 2301 GAAACAGAGAAGTTTAATGGAGGGGTTAATTCCATATCTGATTCATGCTATCAAGAAAGA 2360
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 GAAACATAGAATTTTAATGGAGGGGTTAATTCCATATCTGATTCATGCTATCAAGAAAGA 93
Query 2361 CTATAAGCCTGATCATCAGAGGTATCGATCGATGTCTGTAGGATCGAGCCGAAGCTATCG 2420
| | ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 94 CCACAAGCCTGATCATCAGAGGTATCGATCGATATCTGTGGGATCGAGCCGAAGCTATCG 153
Query 2421 ACCATTAATGATGGGACAAGAAGGTTCTTCTTCGATGCAGGGATCTTCTCACCGTCGAAC 2480
||| ||||||||||||||||| || |||||||| ||||||||||||||||||||||||||
Sbjct 154 ACCTTTAATGATGGGACAAGACGGCTCTTCTTCAATGCAGGGATCTTCTCACCGTCGAAC 213
Query 2481 TAGATCAGACTACAATCCACCTGCTATAATGGATAAGTCTGATCAGAGATCATCAGGTTT 2540
|||||||||||| ||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 214 TAGATCAGACTATAATCCACATGTTATAATGGATAAGTTTGATCAGAGATCATCAGGTTT 273
Query 2541 TGGTCAAGAATTTGTGAATAAAGATTCTTCTTCTCA-AAATATAGCAACAAAGACTTAG 2598
|||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 274 TGGTCAAGAATTTGTGAATAAAGATTCTTCTTCTCAGAAA-ATAGCAACAAAGACTTAG 331
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 128979210453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5