BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318717
Length=1149
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19630.1 | Symbols: | Radical SAM superfamily protein | chr... 972 0.0
> AT3G19630.1 | Symbols: | Radical SAM superfamily protein | chr3:6818387-6820743
REVERSE LENGTH=1477
Length=1477
Score = 972 bits (526), Expect = 0.0
Identities = 592/624 (95%), Gaps = 3/624 (0%)
Strand=Plus/Plus
Query 528 TCA-GGGAATGGGAGAACCTTTAAATAACTACAATGCTGTTGTTGAAGCTGTCCGCGTCA 586
||| |||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 566 TCATGGGAATGGGAGAACCTTTAAATAACTACAATGCTGTTGTTGAAGCTGTTCGTGTCA 625
Query 587 TGTTAAAACAGCCTTTTCAGCTGTCACCCAAAAGAATTACCATATCAACTGTCGGAATTG 646
||||||| || || ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 626 TGTTAAACCAACCATTTCAGCTGTCGCCCAAAAGAATTACCATATCAACTGTCGGAATTG 685
Query 647 TTCACGCAATTAGCAAGCTACACAATGATCTACCAGGTGTAAGTTTAGCAGTATCTCTTC 706
|||||||||||| ||||||||||||||||||||| |||||||||||||||||||| || |
Sbjct 686 TTCACGCAATTAACAAGCTACACAATGATCTACCCGGTGTAAGTTTAGCAGTATCCCTCC 745
Query 707 ACGCCCCAGTTCAAGAAATCCGCTGCCAGATCATGCCAGCAGCTAGAGCCTTTCCTCTT- 765
| || ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 746 ATGCACCAGTTCAAGAAATCCGCTGCCAGATCATGCCAGCAGCTAGAGCCTTTCCT-TTA 804
Query 766 CAAAAGCTTATGGATGCACTTCAAACTTTCCAAAAGAACAGTCAACAAAAGATCTTCATT 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 CAAAAGCTTATGGATGCACTTCAAACTTTCCAAAAGAACAGTCAACAAAAGATCTTCATT 864
Query 826 GAGTACATAATGCTTGATGGAGTAAATGATCAAGAGCAGCACGCTCATCTACTTGGCGAA 885
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 865 GAGTACATAATGCTTGATGGAGTAAATGATCAAGAGCAGCACGCTCATCTACTAGGCGAA 924
Query 886 TTGCTAAAGACATTTCAAGTGGTCATAAATTTGATACCATTTAACCCAATTGGGTCCACA 945
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 925 TTGCTAAAGACATTTCAAGTGGTCATAAATTTGATACCATTTAATCCAATTGGATCCACA 984
Query 946 AGCCAATTCAAAACAAGCAGCATACAAAGCGTATCAAGTTTCCAGAAAATCCTGAGGGAA 1005
||||||||| ||||||||||||||||| |||| ||||| |||||||||||||||||||||
Sbjct 985 AGCCAATTCGAAACAAGCAGCATACAAGGCGTGTCAAGATTCCAGAAAATCCTGAGGGAA 1044
Query 1006 ACGTACAAGATCCGAACCACAATTCGCAAAGAAATGGGTCAGGATATTAGTGGCGCTTGC 1065
|| ||||||||||| || |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1045 ACATACAAGATCCGGACTACAATTCGCAAAGAAATGGGTCAGGATATTAGCGGCGCTTGC 1104
Query 1066 GGTCAGCTAGTCGTGAACCAACCAGACAGCAAAAAGATTCCTGGAACTGTGGAACTCAGA 1125
||||||||||| |||||||||||||||| |||||||| |||||||||||||||||| |||
Sbjct 1105 GGTCAGCTAGTGGTGAACCAACCAGACATCAAAAAGACTCCTGGAACTGTGGAACTTAGA 1164
Query 1126 GACATTGAAGATCTGCATCTCTAA 1149
||||| |||||||||| |||||||
Sbjct 1165 GACATAGAAGATCTGCTTCTCTAA 1188
Score = 826 bits (447), Expect = 0.0
Identities = 483/501 (96%), Gaps = 0/501 (0%)
Strand=Plus/Plus
Query 1 ATGAAGTTGAAATCGGTGTTCGACGCTTCGGAAATCAAATCGGAATTTGAATCAGCGGGA 60
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 70 ATGAAGTTGAAATCGGTGTTCGATGCTTCGGAAATCAAATCGGAATTTGAATCAGCGGGA 129
Query 61 ATAAACCCTAATTTTGCGATTCCAATCTGGAAGTATGTAATTCAAAATCCTGATTGTGTT 120
||||||||||| || ||||||| ||||||||||||||||||||| ||||||||||| |||
Sbjct 130 ATAAACCCTAAATTCGCGATTCAAATCTGGAAGTATGTAATTCAGAATCCTGATTGCGTT 189
Query 121 TGGGACGAGATTCCTTCATTGCCTTCTGCTGCATACTCTCTCCTCCATTCCAAGTTCAAG 180
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 190 TGGGACGAGATTCCTTCATTGCCTTCCGCTGCATACTCTCTTCTCCATTCCAAGTTCAAG 249
Query 181 ACTCTTACTTCGTCTCTTCACTCGCTATTCCATTCCTCAGATGGCACAACCTCAAAACTC 240
||||||||||||||||||||||||||||| |||||||| |||||||| |||||||| ||
Sbjct 250 ACTCTTACTTCGTCTCTTCACTCGCTATTTCATTCCTCCGATGGCACCACCTCAAAGCTT 309
Query 241 CTCATCAAGCTCCAGAATGGAGCTTTTGTGGAAGCTGTGGTAATGCGATATGATACTCGG 300
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 310 CTCATCAAGCTCCAGAATGGAGCTTTTGTGGAAGCTGTGGTAATGAGATACGATACTCGG 369
Query 301 TTGGGGATATTAGGAGGGAAACCACGTCCTGGAGGTATAAGATCTACGTTATGTATTTCA 360
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TTGGGGATGTTAGGAGGGAAACCACGTCCTGGAGGTATAAGATCTACGTTATGTATTTCA 429
Query 361 TCTCAGGTTGGTTGTAAGATGGGTTGTACATTCTGTGCTACTGGTACCATGGGATTTAAA 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 430 TCTCAGGTTGGTTGTAAGATGGGTTGCACATTCTGTGCTACTGGTACCATGGGATTTAAA 489
Query 421 AGCAATTTAACATCTGGAGAAATTGTGGAGCAGCTTGTTCACGCCTCTCGCATAGCTGAT 480
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 490 AGCAATTTAACATCTGGAGAAATTGTGGAGCAGCTTGTTCACGCCTCTCGCATTGCTGAT 549
Query 481 ATACGCAACATCGTTTTCATG 501
|||||||||||||||||||||
Sbjct 550 ATACGCAACATCGTTTTCATG 570
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56375212035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5