BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318745
Length=1548
Score E
Sequences producing significant alignments: (Bits) Value
AT3G19940.1 | Symbols: | Major facilitator superfamily protein... 2507 0.0
AT1G50310.1 | Symbols: ATSTP9, STP9 | sugar transporter 9 | chr... 1177 0.0
> AT3G19940.1 | Symbols: | Major facilitator superfamily protein
| chr3:6938211-6939975 FORWARD LENGTH=1545
Length=1545
Score = 2507 bits (1357), Expect = 0.0
Identities = 1485/1548 (96%), Gaps = 3/1548 (0%)
Strand=Plus/Plus
Query 1 ATGGCAGGAGGAGCTTTTGTATTAGAAGGAGGAGGTGGTGGAAGAAGTTATGAAGGAGGA 60
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCAGGAGGAGCTTTTGTATCAGAAGGAGGAGGTGGTGGAAGAAGTTATGAAGGAGGA 60
Query 61 GTCACAGCATTCGTTATCATTACATGTATTGTGGCCGCCATGGGAGGTCTCCTCTTTGGT 120
||||| |||||||||||||| |||||||| || ||||||||||||||||| |||||||||
Sbjct 61 GTCACCGCATTCGTTATCATGACATGTATCGTCGCCGCCATGGGAGGTCTGCTCTTTGGT 120
Query 121 TACGACCTTGGAATCTCAGGAGGAGTTACATCAATGGAGGAGTTTCTTACCAAGTTCTTC 180
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 121 TATGACCTTGGAATCTCAGGAGGTGTTACATCAATGGAAGAGTTTCTTACCAAGTTCTTC 180
Query 181 CCTCAAGTAGAGAGCCAGATGCAAAAGGCGAAGCACGACACGGCTTATTGCAAATTCGAT 240
||||||||||||||||||||| ||||||||||||||||||||||||| || ||||| |||
Sbjct 181 CCTCAAGTAGAGAGCCAGATGAAAAAGGCGAAGCACGACACGGCTTACTGTAAATTTGAT 240
Query 241 AACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTTGCAGCTCTTGTAGCTTCCTTT 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTCGCAGCTCTTGTAGCTTCCTTT 300
Query 301 ATGGCTTCGGTTATAACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATCGGTGGACTT 360
|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 301 ATGGCTTCAGTTATCACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATTGGTGGACTT 360
Query 361 GCTTTCCTCATCGGTGCACTTTTCAACGCATTTGCCGTTAATGTTGCAATGCTCATAATC 420
||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||
Sbjct 361 GCTTTCCTCATCGGTGCACTTTTTAACGCATTTGCCGTTAATGTTTCAATGCTCATCATC 420
Query 421 GGTAGACTTTTGCTCGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGTATACCTA 480
|||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 421 GGTAGACTGTTGCTTGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGTGTACCTA 480
Query 481 TCGGAAATGGCTCCAGCGAAGATAAGAGGAGCTTTAAACATCGGTTTTCAGATGGCTATA 540
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TCTGAAATGGCTCCAGCGAAGATAAGAGGAGCTTTAAACATCGGTTTTCAGATGGCTATA 540
Query 541 ACGATTGGAATCTTGGTGGCTAATCTGATAAACTATGGAACATCAAAGATGGCTCAACAT 600
|| ||||||||| | ||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ACCATTGGAATCCTAGTGGCGAATCTGATTAACTATGGAACATCAAAGATGGCTCAACAT 600
Query 601 GGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTAATGGTGATTGGATCA 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 601 GGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTTATGGTGATTGGATCA 660
Query 661 TTCATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATGAGGAAGCAAAA 720
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TTTATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATGAGGAAGCAAAA 720
Query 721 CAGATGTTGAAGAAGATACGTGGAGCTGACAACGTTGACCATGAGTTTCAAGATCTCATA 780
|| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 721 CAAATGTTGAAGAAGATACGTGGAGCTGACAATGTTGATCATGAGTTTCAAGATCTCATT 780
Query 781 GATGCTGTTGAAGCTGCCAAAAAGGTGGAATATCCATGGAAGAACATCATGGAGAGTAGA 840
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 781 GATGCTGTTGAAGCTGCCAAAAAGGTGGAAAATCCATGGAAGAACATCATGGAGAGTAAA 840
Query 841 TACAGACCAGCTTTAATCTTCTGCTCGGCGATTCCCTTTTTCCAACAGATCACTGGAATC 900
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 841 TATAGACCAGCTTTAATCTTCTGCTCGGCCATTCCCTTTTTCCAACAGATCACTGGAATC 900
Query 901 AATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACTCTTGGTTTTGGTGACGATGCT 960
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 901 AATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACTCTTGGTTTTGGTGATGATGCT 960
Query 961 GCTCTTATGTCCGCCGTTATAACCGGTGTTGTTAACATGCTCTCAACCTTTGTCTCTATT 1020
||||||||||| || ||||||||||||||||| |||||||| |||||||||||||| |||
Sbjct 961 GCTCTTATGTCTGCTGTTATAACCGGTGTTGTCAACATGCTTTCAACCTTTGTCTCAATT 1020
Query 1021 TACGCGGTTGATAGATATGGAAGGAGGTTGCTTTTCCTCGAAGGTGGCATTCAAATGTTC 1080
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1021 TACGCGGTTGATAGATATGGTAGAAGGTTGCTTTTCCTCGAAGGTGGCATTCAAATGTTC 1080
Query 1081 ATTTGTCAGCTTCTCGTTGGTTCTTTCATCGGTGCAAGATTTGGAACCACAGGAACCGGA 1140
|||||||||||||| |||||||||||||||||||||||||| |||||| |||||||||||
Sbjct 1081 ATTTGTCAGCTTCTTGTTGGTTCTTTCATCGGTGCAAGATTCGGAACCTCAGGAACCGGA 1140
Query 1141 ACCTTGACGCCAGCAACAGCAGACTGGATTCTTGCTTTCATATGTGTGTACGTTGCAGGA 1200
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1141 ACATTGACGCCAGCAACAGCAGACTGGATTCTTGCTTTCATATGTGTGTACGTTGCAGGA 1200
Query 1201 TTTGCATGGTCATGGGGCCCATTGGGATGGTTGGTACCGAGTGAAATCTGTCCATTGGAG 1260
||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||
Sbjct 1201 TTTGCATGGTCATGGGGTCCATTGGGATGGTTGGTACCGAGTGAGATATGTCCATTGGAA 1260
Query 1261 ATTCGACCAGCGGGACAAGCCATCAACGTCTCGGTCAACATGTTCTTCACTTTCCTCATT 1320
||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1261 ATTAGACCAGCGGGACAAGCCATCAACGTCTCGGTCAACATGTTCTTCACTTTTCTCATT 1320
Query 1321 GGTCAATTCTTTTTGACAATGCTTTGTCACATGAAGTTTGGTCTATTCTACTTCTTTGCA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 GGTCAATTCTTTTTGACAATGCTTTGTCACATGAAGTTTGGTCTATTCTACTTCTTTGCA 1380
Query 1381 AGCATGGTTGCGATCATGACGGTTTTCATTTACTTTTTGTTGCCGGAGACCAAAGGTGTT 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 AGCATGGTTGCGATCATGACGGTTTTCATTTACTTTTTGTTGCCGGAGACCAAAGGTGTT 1440
Query 1441 CCTATTGAAGAGATGGGAAGAGTTTGGAAGCAACATTGGTTCTGGAAAAAGTATATCCCA 1500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1441 CCTATTGAAGAGATGGGAAGAGTTTGGAAGCAACATTGGTTCTGGAAAAAGTATATCCCA 1500
Query 1501 GATGATGCAATTATTGGTGGACATGATGATGATAACAATACCAATTAA 1548
|| ||||| |||||||||||||||||||| | | |||||||||||||
Sbjct 1501 GAAGATGCTATTATTGGTGGACATGATGAC-A-A-CAATACCAATTAA 1545
> AT1G50310.1 | Symbols: ATSTP9, STP9 | sugar transporter 9 | chr1:18635984-18638110
FORWARD LENGTH=1554
Length=1554
Score = 1177 bits (637), Expect = 0.0
Identities = 1260/1555 (81%), Gaps = 65/1555 (4%)
Strand=Plus/Plus
Query 1 ATGGCAGGAGGAGCTTTTGTATTAGAAGGAGGAGGTGGTGGAAGA-AGTTATGAAGGAGG 59
||||| |||||||| ||||||| |||||| || ||||| |||| | || |||||||| ||
Sbjct 1 ATGGCTGGAGGAGCCTTTGTATCAGAAGGTGGTGGTGGAGGAA-ACAGCTATGAAGGCGG 59
Query 60 AGTCACAG-CATTCGTTATCATTACATGTATTGTGGCCGCCATGGGAGGTCTCCTCTTTG 118
|||||| | | || || ||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 60 AGTCACCGTC-TTTGTCATCATGACATGTATTGTGGCCGCTATGGGAGGTCTCCTCTTTG 118
Query 119 GTTACGACCTTGGAATCTCAGGAGGAGTTACATCAATGGAGGAGTTTCTTACCAAGTTCT 178
|||| ||||| || |||||||| ||||| ||||| |||||||||||||| | |||||| |
Sbjct 119 GTTATGACCTCGGTATCTCAGGTGGAGTGACATCTATGGAGGAGTTTCTGAGCAAGTTTT 178
Query 179 TCCCTCAAGTAGA-GAGCCAGATGCA-AAAGGCGAA-GCACGACACGGCTTATTGCAAAT 235
|||| | || || || || ||||| || || || || ||| || ||||| |||||||
Sbjct 179 TCCCGGAGGTGGATAAG-CAAATGCACGAA-GC-AAGGCGCGAGACTGCTTACTGCAAAT 235
Query 236 TCGATAACCAAATGCTCCAATTGTTCACTTCTTCTCTCTACCTTGCAGCTCTTGTAG-CT 294
||||||||||| |||| || ||||||||||| || |||||||| || || || | | ||
Sbjct 236 TCGATAACCAATTGCTACAGTTGTTCACTTCCTCACTCTACCTCGCGGCACTCG-CGTCT 294
Query 295 TCCTTTATGGCTTCGGTTATAACTAGGAAGCATGGACGTAAAGTCTCTATGTTTATCGGT 354
|||||| | ||||||| | | || |||||| | ||||| ||| |||| |||||| | ||
Sbjct 295 TCCTTTGTAGCTTCGGCTGTCACAAGGAAGTACGGACGCAAAATCTCCATGTTTGTTGGA 354
Query 355 GGACTTGCTTTCCTCATCGGTGCACTTTTCAACGCATTTGCCGTTAATGTTGCAATGCTC 414
|| ||||||||||||| ||| | || |||||||||||||| ||||| |||||||||
Sbjct 355 GGGGTTGCTTTCCTCATAGGTTCTCTATTCAACGCATTTGCTACCAATGTCGCAATGCTC 414
Query 415 ATAATCGGTAGACTT-TTGCTCGGTGTTGGTGTTGGATTTGCTAATCAGTCTACTCCGGT 473
|| | |||||| || |||||||| || |||||||||||||| ||||||||||| || ||
Sbjct 415 ATCGTTGGTAGA-TTGTTGCTCGGAGTCGGTGTTGGATTTGCCAATCAGTCTACGCCTGT 473
Query 474 ATACCTATCGGAAATGGCTCCAGCGAAGATAAGAGGAGC-TTTAAACATCGGTTTTCAGA 532
|| || ||||| ||||||||||||||||| ||||||| || |||||||| ||||| |
Sbjct 474 TTATCTCTCGGAGATGGCTCCAGCGAAGATCCGAGGAGCACTT-AACATCGGGTTTCAAA 532
Query 533 TGGCTATAACGATTGGAATCTTGGTGGCTAATC-TGATAAACTATGGAACATC-AAAGAT 590
|||||||||| || || || ||| | || || | | || ||||| |||||||| || ||
Sbjct 533 TGGCTATAACCATCGGGATTTTGATTGC-AAACTTAATCAACTACGGAACATCTCAA-AT 590
Query 591 GGCTCAA-CATGGATGGAGGGTTTCTTTAGGTTTAGCAGCTGTTCCAGCTGTTGTAATGG 649
|||| || | |||||||| || || || |||||||| ||||| || || ||| | ||||
Sbjct 591 GGCT-AAGAACGGATGGAGAGTATCATTGGGTTTAGCCGCTGTACCGGCAGTTATTATGG 649
Query 650 TGATTGGATCATTCATTTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAAAATG 709
| |||||||| || | |||||||||||||||||||||||||||||||||||||| | |
Sbjct 650 TTATTGGATCTTTTGTCTTGCCCGATACACCAAACTCGATGCTCGAGAGAGGCAAGTACG 709
Query 710 AGGAAGCAAAACAGATGTTG-AAGAAGATACGTGGAGCTGACAACGTTGACCATGAGTTT 768
| |||| | | |||||||| || ||||| ||||||||||| ||||| || | ||||||
Sbjct 710 AACAAGCGAGAGAGATGTTGCAA-AAGATTCGTGGAGCTGATAACGTAGATGAGGAGTTT 768
Query 769 CAAGATCTCA-TAGATGCT-GTTGAAGCTGCCAA-AAAGGTGGAATA-TCCATGGAAGAA 824
|||||||| | |||||| || || ||||| || |||| |||| || ||||||||||||
Sbjct 769 CAAGATCTGTGT-GATGCTTGT-GAGGCTGCTAAGAAAG-TGGA-TAATCCATGGAAGAA 824
Query 825 CATCATGGAG-AGT-AGA-TACAGACCAGCT-TTAATCTTCTGCTCGGCGATTCCCTTT- 879
||| | | || | | |||||||| ||| || | ||||| || |||||||| |||
Sbjct 825 CATTTTCCAACAGGCAAAATACAGACCCGCTCTTGTT-TTCTGTTCTGCGATTCC-TTTC 882
Query 880 TTCCAACAGATCACTGGAATCAATGTCATTATGTTCTACGCTCCTGTTCTCTTCAAGACT 939
||||||||||| ||||| |||||||| || ||||||||||| || |||||||| ||||||
Sbjct 883 TTCCAACAGATTACTGGTATCAATGTTATCATGTTCTACGCCCCCGTTCTCTTTAAGACT 942
Query 940 CTTGGTTTTG-GTGACGATGC-T-GCTCTTATGTCCGCCGTTATAACCGGTGTTGTTAAC 996
|| ||||||| | || ||||| | |||| || || || ||||| || |||| || ||
Sbjct 943 CTCGGTTTTGCG-GATGATGCCTCGCTC--ATCTCAGCGGTTATTACGGGTGCGGTCAAT 999
Query 997 AT-GCTCTCAACCTTTGTCTCTATTTACGCGGTTGATAGATATGGAAGGAGG-TTGCTTT 1054
| | |||| ||| ||||||| || || |||||||| || || ||||| ||| || || |
Sbjct 1000 GTTG-TCTCTACCCTTGTCTCCATCTATGCGGTTGACAGGTACGGAAGAAGGATT-CTCT 1057
Query 1055 TCCTCGAAGGTGGCATTCAAATG-TTCATTTGTCAGCTTC-TCGTTGGTTCTTTCATCGG 1112
|||| ||||| ||||| |||||| || ||| ||| | | | |||||| | || || ||
Sbjct 1058 TCCTTGAAGGAGGCATCCAAATGATTG-TTTCCCAGAT-CGTTGTTGGTACCTTGATTGG 1115
Query 1113 T--GCAAGATTTGGAACCACAGGAACCGGAACCTTGACGCCAGCAACAGCAGACTGGATT 1170
| | ||| ||||||||||| ||| | || ||||| || || ||||||||||| |||||
Sbjct 1116 TATG-AAG-TTTGGAACCACGGGATCAGGGACCTTAACACCTGCAACAGCAGATTGGATC 1173
Query 1171 CTTGCTTTCATATGTGTGTACGTTGCAGGATTTGCATGGTCATGGGGCCCATTGGGATGG 1230
|| |||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||
Sbjct 1174 CTGGCTTTCATATGTTTGTATGTTGCAGGATTTGCATGGTCATGGGGTCCATTAGGATGG 1233
Query 1231 TTGGTACCGAGTGAAATCTGTCCATTGGAGATTC-GACCAGCGGGACAAGCCATCAACGT 1289
|| ||||| ||||| |||||||||||||| || | |||||||||||||||||||||||||
Sbjct 1234 TTAGTACCAAGTGAGATCTGTCCATTGGAAAT-CAGACCAGCGGGACAAGCCATCAACGT 1292
Query 1290 CTCGGTCAACATGTTCTTCACTTTCCTCATTGGTCAATTCTTTT-TGACAATGCTTTGTC 1348
||| ||||||||||||||||||||||||||||| || || ||| | || |||||||| |
Sbjct 1293 CTCTGTCAACATGTTCTTCACTTTCCTCATTGGACAGTT-TTTCCTCACGATGCTTTGCC 1351
Query 1349 ACATGAAGTTTGGTCTATTCTACTTCTTTGCAAGCATGGTTGC-GATCATGACGGTTTTC 1407
|||||||||||||||| ||||||||||||| | | |||||||| | ||||||| || |||
Sbjct 1352 ACATGAAGTTTGGTCTCTTCTACTTCTTTGGAGGAATGGTTGCAG-TCATGACCGTCTTC 1410
Query 1408 ATTTACTTTTTGTTGCCGGAGACCAAAGGTGTTCCTATTGAAGAGATGGGAAGAGTTTGG 1467
|| ||||| |||||||||||||| ||||| ||||| |||||||| ||||||||||| |||
Sbjct 1411 ATCTACTTCTTGTTGCCGGAGACAAAAGGGGTTCCAATTGAAGAAATGGGAAGAGTATGG 1470
Query 1468 AAGCAACATTGGTTCTGGAAAAAGT-ATATCCCAGATGATGCAATTATTGGTGGA 1521
||||||||| |||||||||| || | || ||||||||||| ||||||| |||
Sbjct 1471 AAGCAACATCCGTTCTGGAAAC-GTTACATGCCAGATGATGCTGTTATTGGAGGA 1524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76405229490
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5