BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318756
Length=1146
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20030.1 | Symbols: | F-box and associated interaction doma... 525 3e-148
AT5G60560.1 | Symbols: | F-box and associated interaction doma... 387 2e-106
AT4G05080.1 | Symbols: | F-box and associated interaction doma... 204 2e-51
AT3G19880.1 | Symbols: | F-box and associated interaction doma... 182 9e-45
> AT3G20030.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6990254-6991462 FORWARD LENGTH=1209
Length=1209
Score = 525 bits (284), Expect = 3e-148
Identities = 337/362 (93%), Gaps = 6/362 (2%)
Strand=Plus/Plus
Query 393 CAGCTATGCTATCGGATACGACAATAACCG-AAATCACAAAATCTTGAGGTTTGTGGATT 451
||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| |
Sbjct 429 CAGGTATGCTATCGGATACGACAATAACCGTAAA-CACAAAATCTTGAGGTTTCTGGAAT 487
Query 452 TTTACGACTCTAA-AGTTAAGCACAAATTTCTCGAGTACGAAATATACGATTTTAGCTCT 510
|||| ||| ||| | | ||||||| |||||| ||||||||||| |||||||||||||||
Sbjct 488 ATTACAACTTTAACA-TGAAGCACAGATTTCTTGAGTACGAAATCTACGATTTTAGCTCT 546
Query 511 AATTCATGGAGGGTTCTTGATATCACTCCCGGTTGGGAAATAGAGTCTTATCAACGTGGT 570
|||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 547 AATTCATGGAGGGTTCTTGATATCGCTCCCCGTTGGGAAATAGAGTCTTATCAACGTGGA 606
Query 571 GCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATA-ATATTCGAAGAGGA 629
||||||||||||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct 607 GCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATAGA-ATACGAAGAGGA 665
Query 630 TGGAGAGTATCCAGAGCCGCCAGATTATTTACTCTGTTTTGATTTTACGACGGAGAGCTT 689
|||||||| |||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 666 TGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTTGATTTTACGACGGAGAGCTT 725
Query 690 TGGACAGTTTCTTCCTCTGCCGTTTGAGCACTATCTTTACGATGCTGGAGCTCTCTCTTC 749
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 726 TGGACAGTTTCTTCCTCTGCCGTTTCAGCACTATCTTTACGATGTTGGAGCTCTCTCTTC 785
Query 750 TC 751
||
Sbjct 786 TC 787
Score = 340 bits (184), Expect = 1e-92
Identities = 299/351 (85%), Gaps = 21/351 (6%)
Strand=Plus/Plus
Query 755 CCAATGCAGTGTCGTGGAATCCTTTTTTAAAAGTTGATATGAAACCACATTGTAGTTTTG 814
||||| ||||||| ||||||||||| ||||||||||||||| ||||||| | || |
Sbjct 875 CCAATACAGTGTCATGGAATCCTTTCTTAAAAGTTGATATGGAACCACACTACGGTCGTA 934
Query 815 GTTTTCAT-TTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGTCGGT 873
||||| || ||| ||||| ||||||||||||||||||||||||||||| ||||| ||| |
Sbjct 935 GTTTT-ATGTTTGACTATTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACTCGCT 993
Query 874 GTTGTTATTCATTTTGACGCATCTGAAATGACCCGCTACGAGGACGCAGCTTACATCATT 933
|||||| |||| ||||||| ||||| |||||||||||||||||||||| |||||||||||
Sbjct 994 GTTGTTTTTCAGTTTGACGAATCTGGAATGACCCGCTACGAGGACGCAACTTACATCATT 1053
Query 934 GGAAAGAATGGGTACGTTAAAAAAGTGCGTCTAGGAGAAGCTCCTGCGAATCAAGGAGGA 993
||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1054 GGAGAGAATGGCTACGTTAAAAAAGTGCGTCTTGGAGAAGCTCCTGCGAATCAAGGAGGA 1113
Query 994 TCTCTCAACTTCAAGTATTGTTGCCCA-CTTGTGTGTTGTAGCTCTTATGTTCCAAGTTT 1052
| | || || || |||| || ||||||| |||||||||||||||||||||
Sbjct 1114 T-----A--TT---GT-TT----CCCATCT-GTGTGTTTTAGCTCTTATGTTCCAAGTTT 1157
Query 1053 AGCACAAATCAACCAAATTACAGGATTCGAAAAGGAAAGAGAGATGAAGAG 1103
|| ||| |||||||||||| ||||||| |||| |||||||| | ||||||
Sbjct 1158 AGTACAGATCAACCAAATTGTAGGATTCAAAAAAGAAAGAGA-A-GAAGAG 1206
> AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:24345949-24347172 FORWARD LENGTH=1125
Length=1125
Score = 387 bits (209), Expect = 2e-106
Identities = 327/383 (85%), Gaps = 12/383 (3%)
Strand=Plus/Plus
Query 16 GATC-TTCCAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTTCCGATAACTTGTCTTG 73
|||| ||| ||| ||||||||| || ||||||||| || |||| ||||||||| ||| |
Sbjct 16 GATCTTTCGGAGG-ATTTGGTAGAGG-AGATATTGTGTAGGGTTTCGATAACTTCTCTAG 73
Query 74 GAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAAGTTCGGATTCTATGTA 133
|||| ||||||| ||| |||||||||||| | | |||||||||| | || |||||||||
Sbjct 74 GAGCAGTGAGATCCACGTGCAAAGGATGGTATGTTTTATCCAAAACTAGGGTTCTATGTA 133
Query 134 AAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAGTATAAGCTTTGTTCAG 193
|||| ||||||| |||||||||| | |||||||||| |||||| ||||||||||| |||
Sbjct 134 AAGCAGAAACAAAGCATCAGTTTCTAGGGTTCATGAAGAAGAATTATAAGCTTTGCTCAA 193
Query 194 TGAGAGCTTTGTTCAATCTTCATGGAACCTTCAACGAAGAAGGAGCT-AACGAATTCGTG 252
|||| | |||| |||| ||||||| ||||||||||||||||| | || |||||| ||
Sbjct 194 TGAG-G-TTTG----ATCTCCATGGAAACTTCAACGAAGAAGGAGGTGAA-GAATTCATG 246
Query 253 TATCCATCTATAAAGGAGTTAGGTAATTTATTTAATCAAGTCAAGATATCTAGAGTTTTT 312
||||||| |||||| ||| |||||||||| || ||||| | | |||| || |||||||
Sbjct 247 AATCCATCAATAAAGAAGTCAGGTAATTTACTTGATCAACTTGATATATGTAAAGTTTTT 306
Query 313 CAATGCGACGGGTTATTGTTATGCATGACCAAAGAGGACAACACTAGGCTCGTGGTATGG 372
|||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||
Sbjct 307 CAATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACTAGGCTCGTGGTATGG 366
Query 373 AACCCTTATTTGGGTCAAATCAG 395
|||||||||| ||||||||||||
Sbjct 367 AACCCTTATTCGGGTCAAATCAG 389
Score = 215 bits (116), Expect = 8e-55
Identities = 174/200 (87%), Gaps = 11/200 (6%)
Strand=Plus/Plus
Query 755 CCAATGCAGTGTCGTGGAAT-CCTTTTTTAAAAGTTGATATGAAACCACATTGTAGTTTT 813
||||||||||||||||| || ||||| ||||||||||||||||||||||| |||||||||
Sbjct 848 CCAATGCAGTGTCGTGG-ATCCCTTTCTTAAAAGTTGATATGAAACCACACTGTAGTTTT 906
Query 814 GGTTTTCATTTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGTCGGT 873
|||||| ||| | || ||||||||||||||||||||||||||||||| |||||||||
Sbjct 907 CGTTTTCGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCC 966
Query 874 GTTGTTATTCATTTTGA------CGC--A-TCTGAAATGACCCGCTACGAGGACGCAGCT 924
|| ||||||||| |||| ||| | |||||||||| |||||||||||||| ||||
Sbjct 967 GTGGTTATTCATGTTGATGTTGTCGCCGAATCTGAAATGAACCGCTACGAGGACGTAGCT 1026
Query 925 TACATCATTGGAAAGAATGG 944
|||||||||||| |||||||
Sbjct 1027 TACATCATTGGAGAGAATGG 1046
> AT4G05080.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr4:2603001-2604176 FORWARD LENGTH=1176
Length=1176
Score = 204 bits (110), Expect = 2e-51
Identities = 319/412 (77%), Gaps = 46/412 (11%)
Strand=Plus/Plus
Query 1 ATGACGACGAT-CTCTGATCTT-C-CAAGGAATTTGGTAGGGA-AGATATTGTCTATGGT 56
||||||| ||| || |||||| | | ||| ||||||| | | |||||||||||| |||
Sbjct 1 ATGACGATGATGTTC-GATCTTACGC-AGG-ATTTGGT-GAAAGAGATATTGTCTAGGGT 56
Query 57 TCCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAA 116
||||||||||| || ||||| ||||||| ||||||||||||||||||||||||||||||
Sbjct 57 TCCGATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTTATCCAA 116
Query 117 AGTTCGGATTCTATGTAAAGCCGAAAC-AAGGCATCAGTTTG-TG--GGGTTCATGATGA 172
|| |||||||||||||||||| |||| || || |||||| | ||||||||| ||
Sbjct 117 AGATCGGATTCTATGTAAAGCA-AAACCAAAACAGCAGTTTCATCAAGGGTTCATGCTGT 175
Query 173 A-GAAGTATAAGCTTTGTTCAGTGAGAGCTTTGTTCAATCTTCATGGAACCTTCAACGAA 231
|| |||| |||| ||||| |||| | || | | ||| | |||||||||||| |||
Sbjct 176 CTGAT-TATAGGCTTCGTTCAATGAG-G-TTCAAT-A-TCT-C-TGGAACCTTCAAGGAA 228
Query 232 GAA-GGAGCTAACGAATTCGTGTATCC-ATCTA-TAAAGGAG-TTAGGTAATTTAT-TTA 286
|| || | || |||||||| || | ||| | |||||||| || |||||||| | |||
Sbjct 229 -AATGGTG--AA-GAATTCGT-TAACTTATC-AGTAAAGGAGATT-GGTAATTT-TCTTA 280
Query 287 ATCAAGTCAAGATATCT-AGA-GTTTTTCAATGCGACGGGT-TATTGTTATGCATGACCA 343
|| |||| |||||||| | | || || | |||| ||| | |||||||||| | ||||
Sbjct 281 ATAAAGTTGAGATATCTCATATGTATTAC--TGCGGCGG-TATATTGTTATGTGTCACCA 337
Query 344 AAGAGGACAACACTAGGCTCGTGGTATGGAACCCTTATTTGGGTCAAATCAG 395
| | | | | |||||||||| | |||||||| |||||||| ||||||||
Sbjct 338 C-G-G-ATA-C--TAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAG 383
> AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:6911435-6912604 REVERSE LENGTH=1170
Length=1170
Score = 182 bits (98), Expect = 9e-45
Identities = 193/237 (81%), Gaps = 14/237 (6%)
Strand=Plus/Plus
Query 1 ATGACGACGATCTCTGATCTT-C-CAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTT 57
||||||| ||| ||||||| | | ||| ||||||||| || ||||| |||||| ||||
Sbjct 1 ATGACGATGATGAGTGATCTTACGC-AGG-ATTTGGTAGAGG-AGATACTGTCTAGGGTT 57
Query 58 CCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAA 117
|||||||||| ||| ||||| ||||||| ||| |||||||||||||||||||||||||||
Sbjct 58 CCGATAACTTCTCTAGGAGCAGTGAGATCCACCTGCAAAGGATGGAACGCTTTATCCAAA 117
Query 118 GTTCGGATTCTATGTAAAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAG 177
| ||||||||||||| || ||| ||| || |||||| | |||||||||||| | |
Sbjct 118 GAACGGATTCTATGTATAGGAGAACCAAAACAGCAGTTTCTAGGGTTCATGATGTTGGAT 177
Query 178 TATAAGCTTTGTTCAGTGAGAGCTTTGTTCAATCTTCATGGAA-CCTTCAACGAAGA 233
|||| |||||| ||| |||| | || ||||||||| |||| ||| |||||||||
Sbjct 178 TATAGGCTTTGCTCAATGAG-G-TT----CAATCTTCACGGAATCCT-CAACGAAGA 227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56224610400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5