BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318756 Length=1146 Score E Sequences producing significant alignments: (Bits) Value AT3G20030.1 | Symbols: | F-box and associated interaction doma... 525 3e-148 AT5G60560.1 | Symbols: | F-box and associated interaction doma... 387 2e-106 AT4G05080.1 | Symbols: | F-box and associated interaction doma... 204 2e-51 AT3G19880.1 | Symbols: | F-box and associated interaction doma... 182 9e-45 > AT3G20030.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6990254-6991462 FORWARD LENGTH=1209 Length=1209 Score = 525 bits (284), Expect = 3e-148 Identities = 337/362 (93%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 393 CAGCTATGCTATCGGATACGACAATAACCG-AAATCACAAAATCTTGAGGTTTGTGGATT 451 ||| |||||||||||||||||||||||||| ||| |||||||||||||||||| |||| | Sbjct 429 CAGGTATGCTATCGGATACGACAATAACCGTAAA-CACAAAATCTTGAGGTTTCTGGAAT 487 Query 452 TTTACGACTCTAA-AGTTAAGCACAAATTTCTCGAGTACGAAATATACGATTTTAGCTCT 510 |||| ||| ||| | | ||||||| |||||| ||||||||||| ||||||||||||||| Sbjct 488 ATTACAACTTTAACA-TGAAGCACAGATTTCTTGAGTACGAAATCTACGATTTTAGCTCT 546 Query 511 AATTCATGGAGGGTTCTTGATATCACTCCCGGTTGGGAAATAGAGTCTTATCAACGTGGT 570 |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 547 AATTCATGGAGGGTTCTTGATATCGCTCCCCGTTGGGAAATAGAGTCTTATCAACGTGGA 606 Query 571 GCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATA-ATATTCGAAGAGGA 629 ||||||||||||||||||||||||||||||||||||||||||||| | || ||||||||| Sbjct 607 GCGTCTTTGAAAGGAAACACTTACTTTATTGCCAAGGAAAAAATAGA-ATACGAAGAGGA 665 Query 630 TGGAGAGTATCCAGAGCCGCCAGATTATTTACTCTGTTTTGATTTTACGACGGAGAGCTT 689 |||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| Sbjct 666 TGGAGAGTTTCCAGAGCCGGCAGATAATTTACTCTGTTTTGATTTTACGACGGAGAGCTT 725 Query 690 TGGACAGTTTCTTCCTCTGCCGTTTGAGCACTATCTTTACGATGCTGGAGCTCTCTCTTC 749 ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| Sbjct 726 TGGACAGTTTCTTCCTCTGCCGTTTCAGCACTATCTTTACGATGTTGGAGCTCTCTCTTC 785 Query 750 TC 751 || Sbjct 786 TC 787 Score = 340 bits (184), Expect = 1e-92 Identities = 299/351 (85%), Gaps = 21/351 (6%) Strand=Plus/Plus Query 755 CCAATGCAGTGTCGTGGAATCCTTTTTTAAAAGTTGATATGAAACCACATTGTAGTTTTG 814 ||||| ||||||| ||||||||||| ||||||||||||||| ||||||| | || | Sbjct 875 CCAATACAGTGTCATGGAATCCTTTCTTAAAAGTTGATATGGAACCACACTACGGTCGTA 934 Query 815 GTTTTCAT-TTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGTCGGT 873 ||||| || ||| ||||| ||||||||||||||||||||||||||||| ||||| ||| | Sbjct 935 GTTTT-ATGTTTGACTATTACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAACTCGCT 993 Query 874 GTTGTTATTCATTTTGACGCATCTGAAATGACCCGCTACGAGGACGCAGCTTACATCATT 933 |||||| |||| ||||||| ||||| |||||||||||||||||||||| ||||||||||| Sbjct 994 GTTGTTTTTCAGTTTGACGAATCTGGAATGACCCGCTACGAGGACGCAACTTACATCATT 1053 Query 934 GGAAAGAATGGGTACGTTAAAAAAGTGCGTCTAGGAGAAGCTCCTGCGAATCAAGGAGGA 993 ||| ||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1054 GGAGAGAATGGCTACGTTAAAAAAGTGCGTCTTGGAGAAGCTCCTGCGAATCAAGGAGGA 1113 Query 994 TCTCTCAACTTCAAGTATTGTTGCCCA-CTTGTGTGTTGTAGCTCTTATGTTCCAAGTTT 1052 | | || || || |||| || ||||||| ||||||||||||||||||||| Sbjct 1114 T-----A--TT---GT-TT----CCCATCT-GTGTGTTTTAGCTCTTATGTTCCAAGTTT 1157 Query 1053 AGCACAAATCAACCAAATTACAGGATTCGAAAAGGAAAGAGAGATGAAGAG 1103 || ||| |||||||||||| ||||||| |||| |||||||| | |||||| Sbjct 1158 AGTACAGATCAACCAAATTGTAGGATTCAAAAAAGAAAGAGA-A-GAAGAG 1206 > AT5G60560.1 | Symbols: | F-box and associated interaction domains-containing protein | chr5:24345949-24347172 FORWARD LENGTH=1125 Length=1125 Score = 387 bits (209), Expect = 2e-106 Identities = 327/383 (85%), Gaps = 12/383 (3%) Strand=Plus/Plus Query 16 GATC-TTCCAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTTCCGATAACTTGTCTTG 73 |||| ||| ||| ||||||||| || ||||||||| || |||| ||||||||| ||| | Sbjct 16 GATCTTTCGGAGG-ATTTGGTAGAGG-AGATATTGTGTAGGGTTTCGATAACTTCTCTAG 73 Query 74 GAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAAGTTCGGATTCTATGTA 133 |||| ||||||| ||| |||||||||||| | | |||||||||| | || ||||||||| Sbjct 74 GAGCAGTGAGATCCACGTGCAAAGGATGGTATGTTTTATCCAAAACTAGGGTTCTATGTA 133 Query 134 AAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAGTATAAGCTTTGTTCAG 193 |||| ||||||| |||||||||| | |||||||||| |||||| ||||||||||| ||| Sbjct 134 AAGCAGAAACAAAGCATCAGTTTCTAGGGTTCATGAAGAAGAATTATAAGCTTTGCTCAA 193 Query 194 TGAGAGCTTTGTTCAATCTTCATGGAACCTTCAACGAAGAAGGAGCT-AACGAATTCGTG 252 |||| | |||| |||| ||||||| ||||||||||||||||| | || |||||| || Sbjct 194 TGAG-G-TTTG----ATCTCCATGGAAACTTCAACGAAGAAGGAGGTGAA-GAATTCATG 246 Query 253 TATCCATCTATAAAGGAGTTAGGTAATTTATTTAATCAAGTCAAGATATCTAGAGTTTTT 312 ||||||| |||||| ||| |||||||||| || ||||| | | |||| || ||||||| Sbjct 247 AATCCATCAATAAAGAAGTCAGGTAATTTACTTGATCAACTTGATATATGTAAAGTTTTT 306 Query 313 CAATGCGACGGGTTATTGTTATGCATGACCAAAGAGGACAACACTAGGCTCGTGGTATGG 372 |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| Sbjct 307 CAATGCGACGGGTTATTGTTATGCGTGACCAAAGAGGAAAACACTAGGCTCGTGGTATGG 366 Query 373 AACCCTTATTTGGGTCAAATCAG 395 |||||||||| |||||||||||| Sbjct 367 AACCCTTATTCGGGTCAAATCAG 389 Score = 215 bits (116), Expect = 8e-55 Identities = 174/200 (87%), Gaps = 11/200 (6%) Strand=Plus/Plus Query 755 CCAATGCAGTGTCGTGGAAT-CCTTTTTTAAAAGTTGATATGAAACCACATTGTAGTTTT 813 ||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| Sbjct 848 CCAATGCAGTGTCGTGG-ATCCCTTTCTTAAAAGTTGATATGAAACCACACTGTAGTTTT 906 Query 814 GGTTTTCATTTTCACTATGACGGTGGCAGTTTCTTCATTGACGAGGAGGAGAAAGTCGGT 873 |||||| ||| | || ||||||||||||||||||||||||||||||| ||||||||| Sbjct 907 CGTTTTCGTTTGCCCTTTGACGGTGGCAGTTTCTTCATTGACGAGGAGAAGAAAGTCGCC 966 Query 874 GTTGTTATTCATTTTGA------CGC--A-TCTGAAATGACCCGCTACGAGGACGCAGCT 924 || ||||||||| |||| ||| | |||||||||| |||||||||||||| |||| Sbjct 967 GTGGTTATTCATGTTGATGTTGTCGCCGAATCTGAAATGAACCGCTACGAGGACGTAGCT 1026 Query 925 TACATCATTGGAAAGAATGG 944 |||||||||||| ||||||| Sbjct 1027 TACATCATTGGAGAGAATGG 1046 > AT4G05080.1 | Symbols: | F-box and associated interaction domains-containing protein | chr4:2603001-2604176 FORWARD LENGTH=1176 Length=1176 Score = 204 bits (110), Expect = 2e-51 Identities = 319/412 (77%), Gaps = 46/412 (11%) Strand=Plus/Plus Query 1 ATGACGACGAT-CTCTGATCTT-C-CAAGGAATTTGGTAGGGA-AGATATTGTCTATGGT 56 ||||||| ||| || |||||| | | ||| ||||||| | | |||||||||||| ||| Sbjct 1 ATGACGATGATGTTC-GATCTTACGC-AGG-ATTTGGT-GAAAGAGATATTGTCTAGGGT 56 Query 57 TCCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAA 116 ||||||||||| || ||||| ||||||| |||||||||||||||||||||||||||||| Sbjct 57 TCCGATAACTTCCCTAGGAGCAGTGAGATCCACTTGCAAAGGATGGAACGCTTTATCCAA 116 Query 117 AGTTCGGATTCTATGTAAAGCCGAAAC-AAGGCATCAGTTTG-TG--GGGTTCATGATGA 172 || |||||||||||||||||| |||| || || |||||| | ||||||||| || Sbjct 117 AGATCGGATTCTATGTAAAGCA-AAACCAAAACAGCAGTTTCATCAAGGGTTCATGCTGT 175 Query 173 A-GAAGTATAAGCTTTGTTCAGTGAGAGCTTTGTTCAATCTTCATGGAACCTTCAACGAA 231 || |||| |||| ||||| |||| | || | | ||| | |||||||||||| ||| Sbjct 176 CTGAT-TATAGGCTTCGTTCAATGAG-G-TTCAAT-A-TCT-C-TGGAACCTTCAAGGAA 228 Query 232 GAA-GGAGCTAACGAATTCGTGTATCC-ATCTA-TAAAGGAG-TTAGGTAATTTAT-TTA 286 || || | || |||||||| || | ||| | |||||||| || |||||||| | ||| Sbjct 229 -AATGGTG--AA-GAATTCGT-TAACTTATC-AGTAAAGGAGATT-GGTAATTT-TCTTA 280 Query 287 ATCAAGTCAAGATATCT-AGA-GTTTTTCAATGCGACGGGT-TATTGTTATGCATGACCA 343 || |||| |||||||| | | || || | |||| ||| | |||||||||| | |||| Sbjct 281 ATAAAGTTGAGATATCTCATATGTATTAC--TGCGGCGG-TATATTGTTATGTGTCACCA 337 Query 344 AAGAGGACAACACTAGGCTCGTGGTATGGAACCCTTATTTGGGTCAAATCAG 395 | | | | | |||||||||| | |||||||| |||||||| |||||||| Sbjct 338 C-G-G-ATA-C--TAGGCTCGTGATTTGGAACCCGTATTTGGGGCAAATCAG 383 > AT3G19880.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:6911435-6912604 REVERSE LENGTH=1170 Length=1170 Score = 182 bits (98), Expect = 9e-45 Identities = 193/237 (81%), Gaps = 14/237 (6%) Strand=Plus/Plus Query 1 ATGACGACGATCTCTGATCTT-C-CAAGGAATTTGGTAG-GGAAGATATTGTCTATGGTT 57 ||||||| ||| ||||||| | | ||| ||||||||| || ||||| |||||| |||| Sbjct 1 ATGACGATGATGAGTGATCTTACGC-AGG-ATTTGGTAGAGG-AGATACTGTCTAGGGTT 57 Query 58 CCGATAACTTGTCTTGGAGCGGTGAGATGCACTTGCAAAGGATGGAACGCTTTATCCAAA 117 |||||||||| ||| ||||| ||||||| ||| ||||||||||||||||||||||||||| Sbjct 58 CCGATAACTTCTCTAGGAGCAGTGAGATCCACCTGCAAAGGATGGAACGCTTTATCCAAA 117 Query 118 GTTCGGATTCTATGTAAAGCCGAAACAAGGCATCAGTTTGTGGGGTTCATGATGAAGAAG 177 | ||||||||||||| || ||| ||| || |||||| | |||||||||||| | | Sbjct 118 GAACGGATTCTATGTATAGGAGAACCAAAACAGCAGTTTCTAGGGTTCATGATGTTGGAT 177 Query 178 TATAAGCTTTGTTCAGTGAGAGCTTTGTTCAATCTTCATGGAA-CCTTCAACGAAGA 233 |||| |||||| ||| |||| | || ||||||||| |||| ||| ||||||||| Sbjct 178 TATAGGCTTTGCTCAATGAG-G-TT----CAATCTTCACGGAATCCT-CAACGAAGA 227 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56224610400 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5