BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318761
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20070.1 | Symbols: TTN9 | titan9 | chr3:7004672-7006918 REV... 1127 0.0
> AT3G20070.1 | Symbols: TTN9 | titan9 | chr3:7004672-7006918 REVERSE
LENGTH=1420
Length=1420
Score = 1127 bits (610), Expect = 0.0
Identities = 791/874 (91%), Gaps = 29/874 (3%)
Strand=Plus/Plus
Query 1 ATGGAAGCTCTCTACGCCAAGCTCTACGACAAATACTCCAAACTCAAGAAGAAGAAAT-T 59
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
Sbjct 294 ATGGAAGCTCTCTACGCCAAGCTCTACGACAAATACACCAAACTCCAGAAGAAGAAATAT 353
Query 60 CTCCGAATACGATGAGGTTAATAGGGAACAAGAAGAGAAATTCCTTAATTTTGTTTCAGC 119
||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||
Sbjct 354 -TCCGAATACGATGAGATTAATAAGGAACAAGAAGAGAAATTCCTTACCTTTGTTTCAGC 412
Query 120 CTCGGAGGAGTTGATGGAACATTTGAGAGGTGAAAATCAGAATT-TGCTGGAGATAGTGG 178
||| ||||||||||||||||||||||||||||||||||||| || | |||||||| || |
Sbjct 413 CTCAGAGGAGTTGATGGAACATTTGAGAGGTGAAAATCAGAGTTCT-CTGGAGATGGTTG 471
Query 179 AGAAAATGAGGAATGAAATGACTTCAATCAGGCATGTACATCATATATTACGATCTGGCA 238
|||| ||| | | ||||| ||| ||| | || | || | |||||||||
Sbjct 472 AGAAGTTGA-G---G-AATGA----AAT----CAT-T---TC--A-ATCA-GATCTGGCA 510
Query 239 GGGACGACAAGTGTT-TGGAGTATCAAAAGCTTCTCAGGGAAGAAGAACAAAAGAACAAA 297
|||||||||||| || |||||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 511 GGGACGACAAGT-TTCTGGAGTGTCAAAAGCTTCTCATGGAAGAAGAACTAAAGAACAAA 569
Query 298 GCACTTTCTGAAGAAGTTGTCAAGCTAAAAGAGCTGGTGAAAGAGGGACATCCTCGCAAC 357
||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||
Sbjct 570 TCACTTTCTGAAGAAGTTGTCAAGCTAAAAGAGCTGGTCCAAGAGGAACATCCTCGCAAC 629
Query 358 TACGAAGATCAAAGTGGAAGAAAACAAAAGACAAAGACACCTGAAACTGCTCGAGTTACA 417
|| |||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||
Sbjct 630 TATGAAGATCAAAGTGGAAAAAAACAAAAGAGAAAGACTCCTGAAAGTGCTCGAGTTACA 689
Query 418 ACGAGAAGCATGAGAAAACGTAGCAGACTGTCAGAAGATATGGTGGAAACGGACATAGTA 477
||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |||
Sbjct 690 ACGAGAAGCATGATAAAACGTAGCAGACTGTCAGAAGATTTGGTGGAAACGGATATGGTA 749
Query 478 TCACCTCAGATTAGCAAACATCATAAAGCAAAGGAAACTCTCTTGGTTTCTCAGCCACAA 537
|||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 750 TCACCTGACATTAGCAAACATCATAAAGCAAAGGAGCCTCTCTTGGTTTCTCAGCCACAA 809
Query 538 TGCTGCAAAACAACCTACGATGGATCAAGTTGTTCTGCTAGTTGTACATTTCAAGCTCTT 597
||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 810 TGCTGCAGAACAACCTACGATGGATCAAGTAGTTCTGCTAGTTGTACATTTCAAGCTCTT 869
Query 598 GGCGAACACTTGCTAGGAATGAAATTGTCAACTAATAATGAA-GGCGAACACGACTGCAT 656
||| |||||||||||||||||||||| |||||||||||| || ||| ||| || ||||||
Sbjct 870 GGCAAACACTTGCTAGGAATGAAATTATCAACTAATAAT-AAGGGCAAACGCGCCTGCAT 928
Query 657 TGTAGCCTCACATCCAACAACCGGTTTATCCTTCAGCCTAACTTTTATAAATAACCCAAT 716
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 929 TGTAGCCTCACACCCAACAACCGGTTTATCCTTCAGCCTAACTTTTATAAATAACCCAAA 988
Query 717 TGGTGAAGAATCTGAGCTGCTCTACGAGGTTGTATCGCTCGGAACATTCCAAAGAGTGGC 776
||||||||||||||||||||| ||| || || ||| ||||||||||| |||||||||||
Sbjct 989 TGGTGAAGAATCTGAGCTGCTTTACAAGCCTGCATCACTCGGAACATTTCAAAGAGTGGC 1048
Query 777 ACCGGAATGGATGAGAGAGGTTATAAAGTTCAGCACAAGTATGTGTCCGGTCTTCTTTGC 836
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 1049 ACCGGAATGGATGAGAGAAGTTATAAAGTTCAGCACAAGTATGTGTCCCATCTTCTTTGA 1108
Query 837 AAGAGTCTCTCGAGTCATTAAGCTCTATTGTTGA 870
||||||||||||||||||||||||| ||||||||
Sbjct 1109 AAGAGTCTCTCGAGTCATTAAGCTCAATTGTTGA 1142
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5