BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318837
Length=1062
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:73135... 1581 0.0
AT1G34790.1 | Symbols: TT1, WIP1 | C2H2 and C2HC zinc fingers s... 180 3e-44
> AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:7313538-7315883
REVERSE LENGTH=1551
Length=1551
Score = 1581 bits (856), Expect = 0.0
Identities = 997/1063 (94%), Gaps = 17/1063 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGATCCAGCTTGTATCTTCAAAAATGGATATGTCGACTACTATGACTATAGCTTC 60
||||||||||||| ||||||||||| |||||||||||| ||||||||| |||||||||||
Sbjct 284 ATGGCTGATCCAGATTGTATCTTCAGAAATGGATATGTAGACTACTATAACTATAGCTTC 343
Query 61 AACTATGCCACTTCCCTCTCACGCATCTACAACTCTCATGACAACTTCTATTATCCTCAC 120
||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 344 AACTATGCCACTTCCCTCTCACGCATCTACAACTCTCATGACAGCTTTTATTATCCTCAC 403
Query 121 CATACCACAAACCCAAACATCAAC-ACAAACCCTAATTTTATTTCACCTGACTCTCCTCC 179
|| || |||||||||||||||||| | |||||||||||| | ||||||||||||||||||
Sbjct 404 CAGACGACAAACCCAAACATCAACGA-AAACCCTAATTTGACTTCACCTGACTCTCCTCC 462
Query 180 ACTTAGAGAAGCCCTCCCTCTGCTTAGCTTAAGCCCCATTCATAAGCATCAAGAACCTAT 239
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 463 ACTTAGAGAAGCCCTCCCTCTCCTTAGCTTAAGCCCCATTCATAAGCATCAAGAACCTAC 522
Query 240 TGCTCACCATCATGAGTACTATTTCATGGAGACGACAGAAACTTCTTCTAATTCAAACTT 299
|||| |||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 523 TGCTAACCACCATGAGTACTATTTCATGGAGACGACAGAAACTTCCTCTAATTCAAACTT 582
Query 300 TATTGATCATGATCTTGGTCAAAGCCAAGAAACTCACCGTCATCTTGATGTAGCCGTGGA 359
| ||||||| | | ||||||| | | | ||||| ||||||| |||||||
Sbjct 583 TCTTGATCA--A------T----GCCAAGACAGTTATCGTCA---TGATGTAACCGTGGA 627
Query 360 TCTTCATCTAGGGTTACCAAACCTCGGTGATGGTGGAAGCAGCAGCAGCGATGTGGTCCT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 628 TCTTCATCTAGGGTTACCAAACCTCGGTGATGGTGGAAGCAGCAGCAGCGATGTGGTCCT 687
Query 420 TGAATCCACCGACTTCCAAGAGCATCATCATGATCATCATCAAGATCAAGGAGTAGAAGT 479
||| ||||||||| ||||||| ||| |||||||||||||||||||||||| | |||||
Sbjct 688 TGATTCCACCGACCACCAAGAGGGTCACCATGATCATCATCAAGATCAAGGACTTGAAGT 747
Query 480 TACTATTGCTTCTGATCATGATGATGATCACGGTGGCTTACAAAGGGGTAATCATCTTCA 539
|||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 748 TACTATGGCTTCTGACCATGATGATGAACATGGTGGCTTACAAAGGGGTAATCATCTTCA 807
Query 540 TCACTTTTGGATTCCTACACCTTCTCAGATTCTGATGGGTCCTACACAGTTCTCTTGTCC 599
|||||||||||| || || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 808 TCACTTTTGGATCCCGACTCCTTCTCAGATTCTGATGGGTCCAACACAGTTCTCTTGTCC 867
Query 600 TCTATGCTTCAAGACCTTCAACAGATACAATAATATGCAAATGCACATGTGGGGACATGG 659
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 868 TCTATGCTTCAAGACTTTCAACAGATACAACAACATGCAAATGCACATGTGGGGACATGG 927
Query 660 TTCACAATACAGAAAAGGACCGGAGTCGCTAAGAGGGACACAACCAACGGCGATGCTGAA 719
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 928 TTCACAATACAGAAAAGGACCGGAGTCGCTGAGAGGGACACAACCAACGGCGATGCTGAA 987
Query 720 GCTGCCTTGCTACTGCTGTGCACCGGGCTGCAAGAACAACATAGACCACCCGAGGGCAAG 779
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 988 GCTGCCTTGCTACTGCTGTGCACCGGGCTGCAAGAACAACATAGACCACCCAAGGGCTAG 1047
Query 780 GCCGCTCAAGGACTTCCGTACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGACC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1048 GCCGCTCAAGGACTTCCGTACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGGCC 1107
Query 840 CTTTGCTTGTCGTAGGTGTGGGAAGGCTTTTGCGGTCAAAGGAGATTGGAGGACCCACGA 899
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1108 CTTTGCTTGTCGTAGGTGTGGGAAGGCATTTGCGGTCAAAGGAGATTGGAGGACTCACGA 1167
Query 900 GAAGAACTGTGGGAAGCTATGGTATTGCTCATGTGGGTCGGATTTCAAGCACAAGAGGTC 959
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1168 GAAGAACTGTGGGAAGCTATGGTATTGCTCATGTGGGTCGGATTTTAAGCACAAGAGGTC 1227
Query 960 ACTTAAGGACCACGTCAAGGCCTTTGGGAATGGTCATGTCCCTTGTTGTGGAATTGATCA 1019
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1228 ACTTAAAGACCACGTTAAGGCCTTTGGGAATGGTCATGTCCCTTGTTGTGGAATTGATCA 1287
Query 1020 TGAGGAAGAGGAGGCTGCTTCTGATGTCGAGCAGCAAGAATGA 1062
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 1288 TGAGGAAGAGGAGGCTGCTTCTGATGTCGAGCAGCAAGAATGA 1330
> AT1G34790.1 | Symbols: TT1, WIP1 | C2H2 and C2HC zinc fingers
superfamily protein | chr1:12763902-12765638 FORWARD LENGTH=1112
Length=1112
Score = 180 bits (97), Expect = 3e-44
Identities = 335/446 (75%), Gaps = 32/446 (7%)
Strand=Plus/Plus
Query 568 ATTCTGAT-GGGTCCTACACAGTTCTCTTGTCC-TCTATGCTTCAAGACCTTCAA-CAGA 624
||||| || |||| | || || || ||||| || | ||||||||||||| ||||| | |
Sbjct 463 ATTCTCATAGGGTTC-ACTCATTTTTCTTG-CCATGTATGCTTCAAGACATTCAATC-GC 519
Query 625 TACAATAATATGCAAATGCACATGTGGGGACATGGTTCACAATACAGAAAAGGACCGGAG 684
||||| ||| | || |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 520 TACAACAATCTTCAGATGCACATGTGGGGACATGGTTCACAATACAGGAAAGGACCGGAG 579
Query 685 TCGCT-AAGAGGGACACAACCAACG-GCGATGCTGAAGC-TGCCTTGCTACTGCTG--T- 738
|| || || ||| ||||| ||| || || ||| | | | | ||||| |||||||| |
Sbjct 580 TCACTGAA-AGGCACACAGCCA-CGAGCCATGTT-AGGGATCCCTTGTTACTGCTGCGTT 636
Query 739 GCACCGGGCTGCAAGAACAACATAGACCACCCGAGGGC-AAGGCCGCTCAAGGACTTCCG 797
| | ||| |||| |||| |||| ||||| || | | ||| || || || ||||| |
Sbjct 637 GAA--GGG-TGCAGGAACCACATTGACCATCCTCGTTCCAAG-CCACTGAAAGACTTTAG 692
Query 798 TACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGACCCTT-TGCTTGTCGTAGGT 856
||||| || || || ||||| || || ||||| | |||||| | | ||||| |
Sbjct 693 GACGCTCCAAACGCACTACAAACGCAAACACGGACACAAACCCTTCT-CGTGTCGCCTTT 751
Query 857 GTGGGAAGGCTTTTG-CGGTCAAAGGAGATTGGAGGACCCACGAGAAGAACTGTGGGAAG 915
| || ||| |||||| | ||||| || |||||| | || || |||||||| ||||| ||
Sbjct 752 GCGGTAAG-CTTTTGGCTGTCAAGGGCGATTGGCGAACACATGAGAAGAATTGTGGAAAA 810
Query 916 C-TATGG-TATTGC-TCATGTGGGTCGGATTTCAAGCACAAGAGGT-CACTTAAGGACCA 971
| | ||| | |||| | || || || ||||| || ||||| | || | |||||||||||
Sbjct 811 CGT-TGGGT-TTGCGTT-TGCGGTTCTGATTTTAAACACAA-ACGTTCTCTTAAGGACCA 866
Query 972 CGTCAAGGCCTTTGGGAATGGTCATG 997
|| ||||| |||||| ||||||||
Sbjct 867 TGTTAAGGCGTTTGGGTCTGGTCATG 892
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52007764620
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5