BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318837 Length=1062 Score E Sequences producing significant alignments: (Bits) Value AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:73135... 1581 0.0 AT1G34790.1 | Symbols: TT1, WIP1 | C2H2 and C2HC zinc fingers s... 180 3e-44 > AT3G20880.1 | Symbols: WIP4 | WIP domain protein 4 | chr3:7313538-7315883 REVERSE LENGTH=1551 Length=1551 Score = 1581 bits (856), Expect = 0.0 Identities = 997/1063 (94%), Gaps = 17/1063 (2%) Strand=Plus/Plus Query 1 ATGGCTGATCCAGCTTGTATCTTCAAAAATGGATATGTCGACTACTATGACTATAGCTTC 60 ||||||||||||| ||||||||||| |||||||||||| ||||||||| ||||||||||| Sbjct 284 ATGGCTGATCCAGATTGTATCTTCAGAAATGGATATGTAGACTACTATAACTATAGCTTC 343 Query 61 AACTATGCCACTTCCCTCTCACGCATCTACAACTCTCATGACAACTTCTATTATCCTCAC 120 ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| Sbjct 344 AACTATGCCACTTCCCTCTCACGCATCTACAACTCTCATGACAGCTTTTATTATCCTCAC 403 Query 121 CATACCACAAACCCAAACATCAAC-ACAAACCCTAATTTTATTTCACCTGACTCTCCTCC 179 || || |||||||||||||||||| | |||||||||||| | |||||||||||||||||| Sbjct 404 CAGACGACAAACCCAAACATCAACGA-AAACCCTAATTTGACTTCACCTGACTCTCCTCC 462 Query 180 ACTTAGAGAAGCCCTCCCTCTGCTTAGCTTAAGCCCCATTCATAAGCATCAAGAACCTAT 239 ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 463 ACTTAGAGAAGCCCTCCCTCTCCTTAGCTTAAGCCCCATTCATAAGCATCAAGAACCTAC 522 Query 240 TGCTCACCATCATGAGTACTATTTCATGGAGACGACAGAAACTTCTTCTAATTCAAACTT 299 |||| |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 523 TGCTAACCACCATGAGTACTATTTCATGGAGACGACAGAAACTTCCTCTAATTCAAACTT 582 Query 300 TATTGATCATGATCTTGGTCAAAGCCAAGAAACTCACCGTCATCTTGATGTAGCCGTGGA 359 | ||||||| | | ||||||| | | | ||||| ||||||| ||||||| Sbjct 583 TCTTGATCA--A------T----GCCAAGACAGTTATCGTCA---TGATGTAACCGTGGA 627 Query 360 TCTTCATCTAGGGTTACCAAACCTCGGTGATGGTGGAAGCAGCAGCAGCGATGTGGTCCT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 628 TCTTCATCTAGGGTTACCAAACCTCGGTGATGGTGGAAGCAGCAGCAGCGATGTGGTCCT 687 Query 420 TGAATCCACCGACTTCCAAGAGCATCATCATGATCATCATCAAGATCAAGGAGTAGAAGT 479 ||| ||||||||| ||||||| ||| |||||||||||||||||||||||| | ||||| Sbjct 688 TGATTCCACCGACCACCAAGAGGGTCACCATGATCATCATCAAGATCAAGGACTTGAAGT 747 Query 480 TACTATTGCTTCTGATCATGATGATGATCACGGTGGCTTACAAAGGGGTAATCATCTTCA 539 |||||| |||||||| ||||||||||| || ||||||||||||||||||||||||||||| Sbjct 748 TACTATGGCTTCTGACCATGATGATGAACATGGTGGCTTACAAAGGGGTAATCATCTTCA 807 Query 540 TCACTTTTGGATTCCTACACCTTCTCAGATTCTGATGGGTCCTACACAGTTCTCTTGTCC 599 |||||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| Sbjct 808 TCACTTTTGGATCCCGACTCCTTCTCAGATTCTGATGGGTCCAACACAGTTCTCTTGTCC 867 Query 600 TCTATGCTTCAAGACCTTCAACAGATACAATAATATGCAAATGCACATGTGGGGACATGG 659 ||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||| Sbjct 868 TCTATGCTTCAAGACTTTCAACAGATACAACAACATGCAAATGCACATGTGGGGACATGG 927 Query 660 TTCACAATACAGAAAAGGACCGGAGTCGCTAAGAGGGACACAACCAACGGCGATGCTGAA 719 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 928 TTCACAATACAGAAAAGGACCGGAGTCGCTGAGAGGGACACAACCAACGGCGATGCTGAA 987 Query 720 GCTGCCTTGCTACTGCTGTGCACCGGGCTGCAAGAACAACATAGACCACCCGAGGGCAAG 779 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 988 GCTGCCTTGCTACTGCTGTGCACCGGGCTGCAAGAACAACATAGACCACCCAAGGGCTAG 1047 Query 780 GCCGCTCAAGGACTTCCGTACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGACC 839 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1048 GCCGCTCAAGGACTTCCGTACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGGCC 1107 Query 840 CTTTGCTTGTCGTAGGTGTGGGAAGGCTTTTGCGGTCAAAGGAGATTGGAGGACCCACGA 899 ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1108 CTTTGCTTGTCGTAGGTGTGGGAAGGCATTTGCGGTCAAAGGAGATTGGAGGACTCACGA 1167 Query 900 GAAGAACTGTGGGAAGCTATGGTATTGCTCATGTGGGTCGGATTTCAAGCACAAGAGGTC 959 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1168 GAAGAACTGTGGGAAGCTATGGTATTGCTCATGTGGGTCGGATTTTAAGCACAAGAGGTC 1227 Query 960 ACTTAAGGACCACGTCAAGGCCTTTGGGAATGGTCATGTCCCTTGTTGTGGAATTGATCA 1019 |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 1228 ACTTAAAGACCACGTTAAGGCCTTTGGGAATGGTCATGTCCCTTGTTGTGGAATTGATCA 1287 Query 1020 TGAGGAAGAGGAGGCTGCTTCTGATGTCGAGCAGCAAGAATGA 1062 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1288 TGAGGAAGAGGAGGCTGCTTCTGATGTCGAGCAGCAAGAATGA 1330 > AT1G34790.1 | Symbols: TT1, WIP1 | C2H2 and C2HC zinc fingers superfamily protein | chr1:12763902-12765638 FORWARD LENGTH=1112 Length=1112 Score = 180 bits (97), Expect = 3e-44 Identities = 335/446 (75%), Gaps = 32/446 (7%) Strand=Plus/Plus Query 568 ATTCTGAT-GGGTCCTACACAGTTCTCTTGTCC-TCTATGCTTCAAGACCTTCAA-CAGA 624 ||||| || |||| | || || || ||||| || | ||||||||||||| ||||| | | Sbjct 463 ATTCTCATAGGGTTC-ACTCATTTTTCTTG-CCATGTATGCTTCAAGACATTCAATC-GC 519 Query 625 TACAATAATATGCAAATGCACATGTGGGGACATGGTTCACAATACAGAAAAGGACCGGAG 684 ||||| ||| | || |||||||||||||||||||||||||||||||| |||||||||||| Sbjct 520 TACAACAATCTTCAGATGCACATGTGGGGACATGGTTCACAATACAGGAAAGGACCGGAG 579 Query 685 TCGCT-AAGAGGGACACAACCAACG-GCGATGCTGAAGC-TGCCTTGCTACTGCTG--T- 738 || || || ||| ||||| ||| || || ||| | | | | ||||| |||||||| | Sbjct 580 TCACTGAA-AGGCACACAGCCA-CGAGCCATGTT-AGGGATCCCTTGTTACTGCTGCGTT 636 Query 739 GCACCGGGCTGCAAGAACAACATAGACCACCCGAGGGC-AAGGCCGCTCAAGGACTTCCG 797 | | ||| |||| |||| |||| ||||| || | | ||| || || || ||||| | Sbjct 637 GAA--GGG-TGCAGGAACCACATTGACCATCCTCGTTCCAAG-CCACTGAAAGACTTTAG 692 Query 798 TACGCTTCAGACACATTACAAGCGGAAGCACGGTGTGAGACCCTT-TGCTTGTCGTAGGT 856 ||||| || || || ||||| || || ||||| | |||||| | | ||||| | Sbjct 693 GACGCTCCAAACGCACTACAAACGCAAACACGGACACAAACCCTTCT-CGTGTCGCCTTT 751 Query 857 GTGGGAAGGCTTTTG-CGGTCAAAGGAGATTGGAGGACCCACGAGAAGAACTGTGGGAAG 915 | || ||| |||||| | ||||| || |||||| | || || |||||||| ||||| || Sbjct 752 GCGGTAAG-CTTTTGGCTGTCAAGGGCGATTGGCGAACACATGAGAAGAATTGTGGAAAA 810 Query 916 C-TATGG-TATTGC-TCATGTGGGTCGGATTTCAAGCACAAGAGGT-CACTTAAGGACCA 971 | | ||| | |||| | || || || ||||| || ||||| | || | ||||||||||| Sbjct 811 CGT-TGGGT-TTGCGTT-TGCGGTTCTGATTTTAAACACAA-ACGTTCTCTTAAGGACCA 866 Query 972 CGTCAAGGCCTTTGGGAATGGTCATG 997 || ||||| |||||| |||||||| Sbjct 867 TGTTAAGGCGTTTGGGTCTGGTCATG 892 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 52007764620 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5