BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318838
Length=1071
Score E
Sequences producing significant alignments: (Bits) Value
AT3G20890.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) fami... 1365 0.0
AT5G10455.1 | Symbols: | pre-tRNA | chr5:3287553-3287634 REVER... 82.4 8e-15
AT4G24565.1 | Symbols: | pre-tRNA | chr4:12686139-12686220 FOR... 82.4 8e-15
AT4G28915.1 | Symbols: | pre-tRNA | chr4:14267281-14267362 FOR... 82.4 8e-15
AT3G20885.1 | Symbols: | pre-tRNA | chr3:7319577-7319658 REVER... 82.4 8e-15
AT2G44320.1 | Symbols: | pre-tRNA | chr2:18309977-18310058 REV... 82.4 8e-15
AT1G77190.1 | Symbols: | pre-tRNA | chr1:29002205-29002286 REV... 82.4 8e-15
AT3G60075.1 | Symbols: | pre-tRNA | chr3:22186835-22186916 REV... 76.8 4e-13
> AT3G20890.1 | Symbols: | RNA-binding (RRM/RBD/RNP motifs) family
protein | chr3:7319848-7321054 FORWARD LENGTH=970
Length=970
Score = 1365 bits (739), Expect = 0.0
Identities = 825/867 (95%), Gaps = 4/867 (0%)
Strand=Plus/Plus
Query 207 ATATGGAGATGGTCCTGATGGGCGTGAGATGGGACCTAAGCGTCAAAGAATGATTGATCA 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 106 ATATGGAGATGGTCCTGATGGGCGTGAGATGGGACCTAAGCGTCAAAGAATGATTGATCA 165
Query 267 AGGTCCTCCTGGACCATTTTATGGACCTCATCCTGGTTCTGGCTTTATGTATAACCCTTA 326
||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct 166 AGGTCCTCCAGGACCATTCTATGGACCTCATCCTAGTTCTGGCTTTATGTATAACCCTTA 225
Query 327 TGGATTTGTTGCTCCTCCTCCACCTCCTCCTTTTCCTGCTGTTCGACTCCGTGGTTTACC 386
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 226 TGGATTTGTTGCTCCTCCTCCACCTCCTCCTTTTCCTGCGGTTCGACTCCGTGGTTTACC 285
Query 387 CTTCGATTGCGCAGAGATTGATGTAGTAGAGTTTTTTCATGGTTTGGATGTGGTTGATGT 446
||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 286 CTTTGATTGCGCAGAGCTTGATGTAGTAGAGTTTTTTCATGGTTTGGATGTGGTTGATGT 345
Query 447 CTTGTTTGTTCACAAGAACAATAAGGTCACTGGAGAAGCCTTTTGCGTTTTGGGTTATCC 506
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 346 CTTGTTTGTTCACAGGAACAATAAGGTTACTGGAGAAGCCTTTTGCGTTTTGGGTTATCC 405
Query 507 CCTCCAGGTTGATTTTGCTCTTCAAAAGAACAGGCAGAACATGGGAAGGAGATATGTAGA 566
||| |||||||||||||||||||| ||||| || ||||||||||||||||||||||||||
Sbjct 406 CCTTCAGGTTGATTTTGCTCTTCAGAAGAATAGACAGAACATGGGAAGGAGATATGTAGA 465
Query 567 AGTTTTTAGGAGTACGAAACAGGAGTACTATAAGGCTATTGCTAATGAGATTGCCGAATC 626
||||||||||||||| ||||||||||||||||||||||||||||| ||| |||| |||||
Sbjct 466 AGTTTTTAGGAGTACAAAACAGGAGTACTATAAGGCTATTGCTAACGAGGTTGCGGAATC 525
Query 627 TCGTGCCCAtggtatggctagtggcggtggtggaggtggcggtggaggtaca-ggtggtg 685
||||| |||||||||||||||||| |||||||||||| ||||| || | | || |||
Sbjct 526 TCGTGTCCATGGTATGGCTAGTGGTGGTGGTGGAGGTTTAGGTGGTGGCA-ATGGAAGTG 584
Query 686 gcaa-tggaggtggaggtggtggcggtggaggtcgaataagtggtggaAGTTCACCTCGC 744
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 G-AGGTGGAGGTGGAGGTGGTGGCGGTGGAGGTCGAATAAGTGGTGGAAGTTCACCTCGC 643
Query 745 AGACATGTGCAGAGGGCTAGATCGAGTGATGATGGGAAAGAGGATATTGAACATACAGGT 804
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 644 AGACACGTGCAGAGGGCTAGATCGAGTGATGATGGGAAAGAGGATATTGAACATACAGGT 703
Query 805 ACCTTGAGACTGAGAGGATTACCTTTCTCAGCAGGAAAGGAAGACATACTTGACTTCTTC 864
| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 704 ATCTTGAGACTTAGAGGATTACCGTTCTCAGCAGGAAAGGAAGACATACTTGACTTCTTC 763
Query 865 AAAGATTTCGAGCTGTCTGAAGACTCTGTTCATGTGACTGTTAATGGTGAAGGGAGACCC 924
||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||
Sbjct 764 AAAGATTTCGAGCTGTCTGAAGACTTTGTTCATGTTACTGTTAATGGTGAAGGGAGACCC 823
Query 925 ACTGGGGAAGCATTTGTGGAGTTTAGGAATGCAGAAGATTCGCGAGCTGCAATGGTCAAG 984
||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 824 ACTGGGGAAGCTTTTGTGGAGTTTAGGAATGCAGAAGATTCACGAGCTGCAATGGTTAAG 883
Query 985 GATAGGAAGACGCTTGGGAGCCGTTACATAGAATTGTTTCCTTCATCGGTTGAAGAGTTA 1044
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 884 GATAGGAAGACGCTTGGCAGCCGTTACATAGAATTGTTTCCTTCATCGGTTGAGGAGTTA 943
Query 1045 GAGGAGGCACTATCAAGAGGAAGGTGA 1071
||||||||||||||||||||||| |||
Sbjct 944 GAGGAGGCACTATCAAGAGGAAGATGA 970
> AT5G10455.1 | Symbols: | pre-tRNA | chr5:3287553-3287634 REVERSE
LENGTH=82
Length=82
Score = 82.4 bits (44), Expect = 8e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 1
> AT4G24565.1 | Symbols: | pre-tRNA | chr4:12686139-12686220 FORWARD
LENGTH=82
Length=82
Score = 82.4 bits (44), Expect = 8e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 1
> AT4G28915.1 | Symbols: | pre-tRNA | chr4:14267281-14267362 FORWARD
LENGTH=82
Length=82
Score = 82.4 bits (44), Expect = 8e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 1
> AT3G20885.1 | Symbols: | pre-tRNA | chr3:7319577-7319658 REVERSE
LENGTH=82
Length=82
Score = 82.4 bits (44), Expect = 8e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 1
> AT2G44320.1 | Symbols: | pre-tRNA | chr2:18309977-18310058 REVERSE
LENGTH=82
Length=82
Score = 82.4 bits (44), Expect = 8e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 1
> AT1G77190.1 | Symbols: | pre-tRNA | chr1:29002205-29002286 REVERSE
LENGTH=82
Length=82
Score = 82.4 bits (44), Expect = 8e-15
Identities = 44/44 (100%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 44 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 1
> AT3G60075.1 | Symbols: | pre-tRNA | chr3:22186835-22186916 REVERSE
LENGTH=82
Length=82
Score = 76.8 bits (41), Expect = 4e-13
Identities = 43/44 (98%), Gaps = 0/44 (0%)
Strand=Plus/Minus
Query 1 ATGTACTTAGCAGGCACACGCCTTAACCACTCGGCCAAAGCGAC 44
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct 44 ATGTACTTAGCAGGAACACGCCTTAACCACTCGGCCAAAGCGAC 1
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52459569525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5