BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318845 Length=1683 Score E Sequences producing significant alignments: (Bits) Value AT3G21060.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2392 0.0 > AT3G21060.1 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr3:7377434-7380213 FORWARD LENGTH=2303 Length=2303 Score = 2392 bits (1295), Expect = 0.0 Identities = 1401/1454 (96%), Gaps = 0/1454 (0%) Strand=Plus/Plus Query 1 ATGAACGCTCCGATCATAGATCCATTGCAAGGAGATTTTCCGGAGGTGATTGAAGAATAT 60 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 389 ATGAACGCTCCGATCATAGATCCATTGCAAGGAGATTTTCCTGAGGTGATTGAAGAATAT 448 Query 61 CTGGAACATGGTGTCATTAAATGTGTTGCCTTTAACCACCGTGGTTCTCTTCTCGCTGCG 120 ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 449 CTGGAACATGGTGTCATTAAATGCGTTGCCTTTAATCACCGTGGTTCTCTTCTCGCTGCT 508 Query 121 GGATGTGCCGATGGGGGATGTGTAATCTGGGATTTCGAAACTAGAGGCATTGCAAAGGAG 180 |||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||| Sbjct 509 GGATGTGCCGATGGTGGCTGTGTAATCTGGGATTTCGAAACAAGAGGCATTGCAAAGGAG 568 Query 181 ATTCGTGATAATGATTGTTCTGCTGCTATAACAAGTGTCTCCTGGTCCAAATATGGGCAC 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 569 ATTCGTGATAATGATTGTTCTGCTGCTATAACAAGTGTCTCCTGGTCCAAATATGGGCAC 628 Query 241 CGCTTGCTTGTGTCTGCTGCAGACAAGTCATTAACTCTTTGGGATGTCTCTACCGGAGAG 300 ||| ||||||| || |||||||| |||||||||||||||||||||||||| ||||||||| Sbjct 629 CGCCTGCTTGTCTCAGCTGCAGATAAGTCATTAACTCTTTGGGATGTCTCAACCGGAGAG 688 Query 301 AAGATTGCTCGTACGATTCTTCAGCAGACTCCGTTGCAAGCTCGTTTAAACCCTGGCTTG 360 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 689 AAGATTGCTCGTACGATTCTTCAGCAGACTCCGTTGCAAGCTCGTTTAAACCCTGGCTTA 748 Query 361 AGTTCTCCTTCTCTCTGTCTGGCGTGCCCGCTCTCTTCTGCTCCGATGATTGTTGACTTT 420 ||||||||||||||||||||||| ||||||||||| || ||||||||||| ||||||||| Sbjct 749 AGTTCTCCTTCTCTCTGTCTGGCATGCCCGCTCTCATCCGCTCCGATGATAGTTGACTTT 808 Query 421 GATATTGATTGTACAACTTTGCTTCCAGTCGCTGTGCCTGAGATGCCTGATGTATTAGCT 480 || ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 809 GACATTGATTGTACAACTTTGCTTCCAGTCTCTGTGCCTGAGATGCCTGATGTATTAGCT 868 Query 481 CCTCCACAACGCAGTAAATGTCCTGAATCAAATCCTCCTTTCTCTCCAGCTGCAGCATGC 540 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 869 CCTCCGCAACGCAGTAAATGTCCTGAATCAAATCCTCCTTTCTCTCCAGCTGCAGCGTGC 928 Query 541 TTTAACAAGTGTGGGGATCTTGTTTATATAGGTAATTCCAAAGGAGAAATACTTATAGTT 600 ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||| Sbjct 929 TTTAACAAGTGTGGGGATCTTGTTTATATCGGTAATTCCAAAGGAGAGATACTTATAGTT 988 Query 601 GATTATAAAAGTGTTCGAGTTCTTGCTTTGGTTCCTGTGCCTGGCGCGGCACCTGTGAAA 660 ||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||| Sbjct 989 GATTATAAAAGTGTTCGAGTTCTTGCTTTGGTTTCTGCGTCTGGTGCGGCACCTGTGAAG 1048 Query 661 AACATAGTGTTTAGCAGGAATGGGCAGTATCTTCTCACGAATTCACATGATCGAACCATT 720 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 1049 AACATTGTGTTTAGCAGGAATGGGCAGTATCTTCTCACAAATTCACATGATCGAACCATT 1108 Query 721 AGGATATATGAAAATCTTCTCCCAGCAAAAAATGTGCTTAGATCCCTTGAGGACTTGGGA 780 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| Sbjct 1109 AGGATATATGAAAATCTTCTCCCAGCAAAAAATGTGCTTAAATCCCTTGAGGACCTGGGG 1168 Query 781 AAGAACATAGATGGGCTTGATGGTGTTGAGAAAATGAAGACTGTTGGATCAAAATGCTTA 840 |||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| Sbjct 1169 AAGAACATAGATGGGCTTGATGGTATTGAGAAAATGAAGACAGTTGGATCAAAATGCTTA 1228 Query 841 ACACTCTTCAGGGAATTCCAAGATTCAGTTACAAAAATGCATTGGAAAGCGCCTTGTTTC 900 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1229 ACACTCTTCAGGGAATTCCAAGATTCAGTTACAAAAATGCATTGGAAAGCGCCTTGTTTC 1288 Query 901 AGTGGTGATGGTGAGTGGGTAGTTGGGGGTTCTGCGTGCAAAGGGGAACATAAGATCTAC 960 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1289 AGTGGTGATGGTGAGTGGGTAGTTGGGGGTTCTGCGTGCAAAGGGGAACATAAGATCTAC 1348 Query 961 ATATGGGATCGAGCGGGGCATCTTGTGAAAATTTTAGAAGGTCCTAAAGAAGCGTTGATT 1020 |||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||| Sbjct 1349 ATATGGGACCGAGCTGGGCATCTTGTGAAAATATTAGAAGGTCCAAAAGAAGCGTTGATT 1408 Query 1021 GATCTAGCTTGGCATCCTGTTCATCCCATAATCGTCTCTGTTTCCTTGGCGGGTCTAGTA 1080 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1409 GATCTAGCTTGGCATCCTGTTCATCCCATAATCGTTTCTGTTTCCTTGGCGGGTCTAGTA 1468 Query 1081 TATATTTGGGCAAAAGATTACACAGAGAACTGGAGTGCATTTGCTCCGGATTTCAAGGAG 1140 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1469 TATATTTGGGCAAAAGATTACACAGAGAACTGGAGTGCATTTGCTCCTGATTTCAAGGAG 1528 Query 1141 CTTGAGGAGAACGAAGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACA 1200 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1529 CTTGAGGAGAATGAAGAGTATGTGGAACGCGAAGATGAATTTGATTTGATACCTGAAACA 1588 Query 1201 GAAAAGGTGAGAGTATTAGATGTTAATGAAGATGAAGAAGTTGACATAGAGACAGTGGAA 1260 |||||||| | ||| ||||||||||||||||||||||||||||||||||| || |||||| Sbjct 1589 GAAAAGGTAAAAGTTTTAGATGTTAATGAAGATGAAGAAGTTGACATAGATACGGTGGAA 1648 Query 1261 AAGGATGCTTTTAGTGATTCAGATATGTCAGTGGAGGAACTCCGCTACCTTCCAGCTGAA 1320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1649 AAGGATGCTTTTAGTGATTCAGATATGTCAGTGGAGGAACTCCGCTACCTTCCAGCTGAA 1708 Query 1321 CCGATCCCAGATACAAATGACCAGCTAGACAATTTGGTTGAAAGCATCAAGTTAATTGAA 1380 || || ||||||||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 1709 CCTATTCCAGATACAAATGACCAGCAAGACAATTTGGTTGAAAGCATAAAGTTAATTGAA 1768 Query 1381 GGTCAGATATCTGCATCTCCAGCTTCTGAAGAGGCTGGTCAGAATGGACACCATGCATCA 1440 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1769 GGTCAGATATCTGCATCTCCTGCTTCTGAAGAGGCTGGTCAGAATGGACACCATGCATCA 1828 Query 1441 AGTCCACAAGGAGA 1454 |||||||||| ||| Sbjct 1829 AGTCCACAAGCAGA 1842 Score = 296 bits (160), Expect = 4e-79 Identities = 187/199 (94%), Gaps = 5/199 (3%) Strand=Plus/Plus Query 1486 GCAGAAGAAATGGGTGAGACACGAGGAAAGAGAAAAAGGAAACCATCAGAGAAAGCCATG 1545 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1838 GCAGAAGAAATGGGTGAGACACGAGGAAAGAGAAAGAGGAAACCATCAGAGAAAGCCATG 1897 Query 1546 GAGCTGCAGGCAGAGAAGGCAAAACCATTGAAAGGGTCAGGCAGAACAGTAAGAGCAAAA 1605 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1898 GAGCTGCAGGCAGAGAAGGCAAAACCATTGAAAGGGTCAGGCAAAACAGTAAGAGCAAAA 1957 Query 1606 GGCAGAGCAGGAGTT-GATCAAGAAACCGATGACAGCATAAATGGCgatgatgatgatga 1664 |||||||| ||| |||||||||||||||||||| |||||||| | | ||||||||| Sbjct 1958 AACAGAGCAGC-GTTTGATCAAGAAACCGATGACAGTATAAATGGTG--G-TGATGATGA 2013 Query 1665 tgatgatgCATATTATTAA 1683 ||||||||||||||||||| Sbjct 2014 TGATGATGCATATTATTAA 2032 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 83182303065 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5