BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318850
Length=1230
Score E
Sequences producing significant alignments: (Bits) Value
AT1G51540.1 | Symbols: | Galactose oxidase/kelch repeat superf... 1275 0.0
> AT1G51540.1 | Symbols: | Galactose oxidase/kelch repeat superfamily
protein | chr1:19115561-19117534 FORWARD LENGTH=1542
Length=1542
Score = 1275 bits (690), Expect = 0.0
Identities = 943/1067 (88%), Gaps = 10/1067 (1%)
Strand=Plus/Plus
Query 169 AAGAAGAAGAAGGATAAAGTTCGGGAAAGGAAACTTTCTGCA-ACGTTTCAAGATTTAG- 226
|||||||||||||||| || |||||||||||| ||| | |||||||||||||| |
Sbjct 328 AAGAAGAAGAAGGATAGTGTGAAGGAAAGGAAACTGTCT-AATACGTTTCAAGATTT-GC 385
Query 227 CTGCTCCTGAACTCAAATGGGAGAAGATGACAGCTGCTCCTGTGCCTCGTCTTGATGGAG 286
||||||||||| | ||||||||||||||| ||||| | ||||| |||||||| || ||||
Sbjct 386 CTGCTCCTGAATTGAAATGGGAGAAGATGGCAGCTTCACCTGTACCTCGTCTAGACGGAG 445
Query 287 CTGCGATTCAGATTAGGAATTTTCTATATGTGTTTGCTGGTTACGGCACCATTGATATTG 346
|||| |||||||||||| || |||| ||||| |||||||| || || ||||||||| |||
Sbjct 446 CTGCAATTCAGATTAGGGATCTTCTTTATGTATTTGCTGGATATGGAACCATTGATCTTG 505
Query 347 TACATTCCCATGTTGATATATACAATTTCGTTGATAA-TACATGGGGAGGAAGATTTGAT 405
| ||||| ||||| ||||| ||||||||| |||||| | | |||||||||||||| ||
Sbjct 506 TGCATTCACATGTCGATATCTACAATTTCACTGATAACT-CGTGGGGAGGAAGATTCAAT 564
Query 406 ATGCCAAAAGAGATGGCACATTCACATTTAGGGATGGTTACGGATGGAAGATACATCTAC 465
||||||||||| ||||| ||||| |||||||||||||| |||||||| ||||||| ||
Sbjct 565 ATGCCAAAAGATATGGCGCATTCTCATTTAGGGATGGTAACGGATGGGCGATACATTTAT 624
Query 466 ATTGTTACTGGTCAATATGGTCCTCAATGTAGAGGGCCTACAGCTAAAACATTTGTGCTT 525
|||||||||||||| | |||||| ||||| ||||| ||||||||||||||||||||||||
Sbjct 625 ATTGTTACTGGTCAGTTTGGTCCACAATGCAGAGGTCCTACAGCTAAAACATTTGTGCTT 684
Query 526 GACACTGATACAAATTCGTGG-AGTGACTTTGTTCCTTTTCCAGTTCCTAGGTATGCTCC 584
|| |||||||||||| | ||| || |||||||||||||| ||||||||||||||||| ||
Sbjct 685 GATACTGATACAAATACATGGAAG-GACTTTGTTCCTTTACCAGTTCCTAGGTATGCACC 743
Query 585 AGCTACTCAGCTATGGAGAGGAAGACTCCACGTGATGGGTGGAAGCAAGGAGAATCGGCA 644
|||||||||||| |||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 744 AGCTACTCAGCTTTGGAGAGGAAGACTTCATGTGATGGGTGGAAGCAAAGAGAATCGATT 803
Query 645 CACACCAGGGCTTGAACACTGGAGTATTGCAGTAAAAGATGGGAAAGCAATGGAAAAGGA 704
|||||||| |||||||| ||||| || ||||| |||||||| ||| | ||||||| ||
Sbjct 804 TACACCAGGACTTGAACATTGGAGCATCGCAGTGAAAGATGGCAAATCTTTGGAAAATGA 863
Query 705 GTGGAGAAGTGAAATTCCAATCCCTCGTGGAGGACCTCACAGAGCATGTGTGGTAGTGGA 764
||||||||||||||| || ||||||||||||||||||||||| |||||||| ||||| ||
Sbjct 864 GTGGAGAAGTGAAATCCCGATCCCTCGTGGAGGACCTCACAGGGCATGTGTAGTAGTTGA 923
Query 765 TGACCGGCTTTTTGTCATTGGTGGTCAAGAAGGTGATTTCATGGCTAAACCAGGATCTCC 824
|||||| || ||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 924 TGACCGACTATTTGTAATTGGTGGTCAAGAAGGTGATTTCATGGCTAAACCTGGATCTCC 983
Query 825 TATTTTCAAATGCTCACGCCGTATGGAGGTGGTGTTCAGTGATGTCTACATGCTGGATGA 884
|| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 984 AATCTTCAAATGCTCACGCCGTATGGAGGTGGTATTCAGTGATGTCTACATGTTGGATGA 1043
Query 885 GGAAATGAAGTGGAAAGTTATGCCATCGATGCCAAAACCCGATTCCCATATTGAATTTGC 944
||||||||| |||||||||||||| ||||||||||||| || |||||||| ||||||||
Sbjct 1044 GGAAATGAAATGGAAAGTTATGCCGCCGATGCCAAAACCGGACTCCCATATCGAATTTGC 1103
Query 945 TTGGAAAGTTGTTAACAACTCCATTGTAATCGTTGGAGGCACCACAGAGAAGCATCCTGA 1004
||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1104 TTGGAAAGTCGTTAATAACTCCATTGTAATCGTTGGAGGCACAACAGAGAAACATCCTGA 1163
Query 1005 AACCAAAAAGATGGTCCTTGTTGGTGAAATCTTCCAGTTCAACCTGAATACAATGAAATG 1064
||||||||||||||| || |||||||||||||||||||||||| | |||||| |||||||
Sbjct 1164 AACCAAAAAGATGGTTCTCGTTGGTGAAATCTTCCAGTTCAACTTAAATACACTGAAATG 1223
Query 1065 GTATGTGATTGG-AAAGTTGCCATACCGTGTGAAGACTACGCTGGTTGGGTATTGGGAGG 1123
|||||||||||| ||| || ||||||||||||||||| ||||||| |||||||||||| |
Sbjct 1224 GTATGTGATTGGGAAA-TTACCATACCGTGTGAAGACAACGCTGGCTGGGTATTGGGATG 1282
Query 1124 GGCAGTTATACTTCACCTCGGGGCAACGAGACAAAGGGCCAGATGATCCCGCACCGCGTA 1183
| ||||||||||||||||| || ||| |||||||||| |||||||||||||| ||| | |
Sbjct 1283 GACAGTTATACTTCACCTCAGGACAAAGAGACAAAGGTCCAGATGATCCCGCCCCGAGGA 1342
Query 1184 AGGTGATGGCAGAGATGTGGAGAACCAAACTGATATTGAATCCATGA 1230
|||| |||||||||||||||||||||||| ||||| | || ||||||
Sbjct 1343 AGGTCATGGCAGAGATGTGGAGAACCAAATTGATACTCAACCCATGA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60441456180
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5