BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318885
Length=1002
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21450.1 | Symbols: | Protein kinase superfamily protein | ... 623 1e-177
> AT3G21450.1 | Symbols: | Protein kinase superfamily protein
| chr3:7553965-7555236 REVERSE LENGTH=813
Length=813
Score = 623 bits (337), Expect = 1e-177
Identities = 537/628 (86%), Gaps = 36/628 (6%)
Strand=Plus/Plus
Query 157 ATGGAGGAATTAAGGCAAGCAACGAACAATTTCGACCTGGATAATAATCATCTTGGGTTT 216
|||||||||||||||||||||||||||||||| ||| |||||||| | | | ||||| |
Sbjct 1 ATGGAGGAATTAAGGCAAGCAACGAACAATTTTGACATGGATAAT-A-C-TATTGGGCAT 57
Query 217 GGATGTTACGGATTAGTTTATACTGGGCTGATCGGA-GACAGGATCGTTGCGATCAAAAG 275
||| || ||||| |||||| |||||||||||| | |||| | ||||| |||||||||
Sbjct 58 GGAAGTCACGGAACAGTTTACACTGGGCTGATC-AAGGACATGCCCGTTGTGATCAAAAG 116
Query 276 GGAGTGGCT-TCA-TCTCCAGCCTAGATTCTTGGATGAGGT---TTCTTAC-----A-T- 323
||||||| | | | || ||| |||||||||||||||||||| | || | |
Sbjct 117 GGAGTGG-TGT-AGTCCCCAACCTAGATTCTTGGATGAGGTACACACAAACAAAAAATTG 174
Query 324 G--TCTAAAATCCAGCATGAAAATTTGGTTAATCTGATCGGTTATTGTTGCGAAGAAGGG 381
| ||| | ||||| ||| ||||||||||||||||| |||||||||||||||| || | |
Sbjct 175 GTTTCTTACATCCAACATAAAAATTTGGTTAATCTGCTCGGTTATTGTTGCGACGACGAG 234
Query 382 AACCAATTGCTCGTCTTTGAGTATATGGTCAAGGGTAACGTGCGAGATTATCTTGGTGAT 441
||||||| |||||||||||||||||||||||| |||| ||| |||||||||| | ||
Sbjct 235 AACCAATCGCTCGTCTTTGAGTATATGGTCAACGGTAGCGTCCGAGATTATC-T--AGAG 291
Query 442 TCTAGTGACTTCACGTTCAAGAAAAGGATATCTGTAGCTCTTGATGCAGCCAAAGGGTTG 501
||||| ||||| |||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 292 TCTAGCGACTTAACGTTCAAGAAAAGAATATCTATAGCTCTTGATGCAGCCAAAGGGTTA 351
Query 502 CTACACTTGCACAACTTAGATCCTCCAGTACAACACAAGAGATTTA-GGACGGGTAAAGT 560
|||||||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 352 CTACACTTGCACAACTTAGATCCTCCAGTACAACACAAGAGATTTACGG-CGAGTAAAGT 410
Query 561 TTTGCTTGATGCCGACCTCAATGCCAAGGTATCGGATGCGGG-AATGTTGGGACTGCTTC 619
|||||| |||||| ||||||||||||||||||| |||| ||| |||||||||||||||||
Sbjct 411 TTTGCTCGATGCCAACCTCAATGCCAAGGTATCAGATG-GGGCAATGTTGGGACTGCTTC 469
Query 620 AAG-ATCGTGATCTTCGTCTC-CTTAATCCAAGAGGTGGTTTAGAGGAGACCATTGATGT 677
||| | ||||| ||| |||| || |||||||||||||||| ||||||||| ||||||||
Sbjct 470 AAGCAA-GTGATATTCATCTCGCT-AATCCAAGAGGTGGTTCAGAGGAGACAATTGATGT 527
Query 678 GTATAGCTTCGGGTTGTTCCTTCTAGAGCTTATCAC-TGGTGAAAAACCTGGACTGTTAC 736
|||||||||||||||||||||||||||||||||||| || | |||| |||||||||||||
Sbjct 528 GTATAGCTTCGGGTTGTTCCTTCTAGAGCTTATCACCTG-TCAAAACCCTGGACTGTTAC 586
Query 737 AATCA-ACCTTTGAAATTATGCAATGGA 763
||||| || | |||| || | |||||||
Sbjct 587 AATCAGAC-TATGAAGTTTTACAATGGA 613
Score = 174 bits (94), Expect = 1e-42
Identities = 172/207 (83%), Gaps = 16/207 (8%)
Strand=Plus/Plus
Query 802 AATATGCCTG--G-AACGTTCACGA-ACCAATCGTTGGAGGCTTATATGA-AGATTACTA 856
||||| |||| | ||| ||||||| ||| |||||| | |||||| ||| | |||||
Sbjct 613 AATATACCTGCAGAAACATTCACGAGACC-ATCGTTCCAAGCTTATCTGATA-ATTAC-G 669
Query 857 T-AGAATGCTT-GACATATCCCGCGATAGATCGCCCGAAGATGGATATGGTTGTGACCGA 914
| |||||||| || ||||||| ||||| ||||||| ||||||||| |||| ||||||||
Sbjct 670 TCGGAATGCTTGGA-ATATCCCCCGATAAATCGCCCAAAGATGGATGTGGTCGTGACCGA 728
Query 915 GCTTGAGACGATTTACCAGAATGAAGTCATCAATGAAG-AGCATGAGGTTGCTCTAGGAA 973
||||||||||||||||| ||| ||||||| || || | ||||||||| |||||||||
Sbjct 729 GCTTGAGACGATTTACCTTAAT---GTCATCAGTG-AGAACCATGAGGTTTCTCTAGGAA 784
Query 974 GTGAGCTTTTTAACATAACCATTCAGT 1000
||||||||||||||||||||||| |||
Sbjct 785 GTGAGCTTTTTAACATAACCATTGAGT 811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49078761619
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5