BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318888
Length=1572
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21470.1 | Symbols: | Pentatricopeptide repeat (PPR-like) s... 2455 0.0
AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor 20... 69.4 1e-10
AT5G09950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 62.1 2e-08
AT4G13650.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 54.7 3e-06
> AT3G21470.1 | Symbols: | Pentatricopeptide repeat (PPR-like)
superfamily protein | chr3:7563503-7565074 FORWARD LENGTH=1572
Length=1572
Score = 2455 bits (1329), Expect = 0.0
Identities = 1495/1576 (95%), Gaps = 8/1576 (1%)
Strand=Plus/Plus
Query 1 ATGAATTTGGAGGAACATTTATCGTTAGGTGAGTTTCATGTGTCGAATCTTATAAAGAAT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAATTTGGAGGAACATTTATCGTTAGGTGAGTTTCATGTGTCGAATCTTATAAAGAAT 60
Query 61 CATATATCTAGAGGATCACCAATACAAGCTCTGGTTTTGTACGGAGGAATCCGCCACAGA 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 61 CATATATCTAGAGGATCACCAATACAAGCTCTGGTTTTGTACGGAGGAATCCGCCGCAGA 120
Query 121 GGAGTGTATTTTCCGGGATGGATTCCTTTGATTTTAAAGGCGTGTGCTTGCGTTGTTCCA 180
||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||||
Sbjct 121 GGAGTGTATTTTCCGGGATGGGTTCCTTTGATTTTAAGGGCATGTGCTTGCGTTGTTCCA 180
Query 181 CGTGTTGTTCTTGGGAAGCTGTTACATTCTGAATCGATCAAGTTCGGTGTTTGTTCTGAT 240
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 181 CGTGTTGTTCTTGGGAAGCTGTTGCATTCTGAATCAATCAAGTTCGGTGTTTGTTCTGAT 240
Query 241 GTTATGGTGGGAAGCTCTCTGATCAGTATGTATGGGAAATGGGGATGTGTAGTTTCTGCA 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 241 GTTATGGTGGGAAGCTCTCTGATCAGTATGTATGGGAAATGTGGATGTGTAGTTTCTGCA 300
Query 301 CGTAAGGTGTTTGACGAAATGCCTGAGAGAAACGTAGCTACTTGGAACGCTATGATTGGT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 301 CGTAAGGTGTTTGACGAAATGCCTGAGAGAAACGTGGCTACTTGGAACGCTATGATTGGT 360
Query 361 GGGTATATGGGTAATGGAGATGCAGTTTCGGCTAGTGGATTGTTCGAGGAGATATCGGTT 420
||||||||| | ||||| |||||||||| ||||||||||||||| || ||||||||||||
Sbjct 361 GGGTATATGAGCAATGGTGATGCAGTTTTGGCTAGTGGATTGTTTGAAGAGATATCGGTT 420
Query 421 TGTAGAAATACGGTGACTTGGATCGAGATGATGAAAGGGTATGGTAAGAGAAAAGAGATT 480
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||
Sbjct 421 TGTAGAAATACGGTGACTTGGATCGAGATGATTAAAGGGTATGGGAAGAGAATAGAGATT 480
Query 481 GAGAAAGCTAGAGAATTGTTTGAGAGAATGCCTATT-GAGTTGAAGAATGTGAAGGCTTG 539
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 481 GAGAAAGCTAGAGAATTGTTTGAGAGAATGCCT-TTCGAGTTAAAGAATGTGAAGGCTTG 539
Query 540 GTCGGTGATGCTCGGAGTTTACGTTAGTAATCGAAAAATGGAGTATGCAAGGAAGTTTTT 599
||| |||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 540 GTCTGTGATGCTTGGAGTTTACGTTAATAATCGAAAAATGGAGGATGCAAGGAAGTTTTT 599
Query 600 CGAGGATATACCGGAGAAGAACTCCTTTGTGTGGTCATTGATGATCTCCGGGTATTTTAG 659
|||||||||||||||||||||| ||||||| |||||||||||||| || |||||||||||
Sbjct 600 CGAGGATATACCGGAGAAGAACGCCTTTGTATGGTCATTGATGATGTCTGGGTATTTTAG 659
Query 660 GATAGGTGATGTGCATGAGGCTACAAG-TGTTTTTTATCTAGTTTTTGCTCGTGATTTGG 718
|||||||||||||||||| |||| | | | ||||||||| ||||||||||||||||||||
Sbjct 660 GATAGGTGATGTGCATGAAGCTAGA-GCTATTTTTTATCGAGTTTTTGCTCGTGATTTGG 718
Query 719 TGATTTGGAACACTTTGATCACTGGTTATGCACAGAATGGGTATTCTGGTGATGCTATTG 778
||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||
Sbjct 719 TGATTTGGAACACTTTGATTGCTGGTTATGCACAGAATGGGTATTCTGATGATGCTATTG 778
Query 779 ATGCTTTCTATAATATGCAAGGAGAAGGGTATGAACCCGATGCGGTAACGGTTTCAAGTG 838
||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 779 ATGCTTTCTTTAATATGCAAGGAGAAGGGTATGAACCGGATGCGGTAACGGTTTCTAGTA 838
Query 839 TTTTATCTGCTTGTGCTCAGTCAGGCCGTCTTGATGTTGGCAGAGAAGTTCACTCTCTGA 898
||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||
Sbjct 839 TTTTATCTGCTTGTGCTCAATCTGGTCGTCTTGATGTTGGCAGAGAAGTTCACTCTCTGA 898
Query 899 TTAACCGTAAAGGAATTGAGCTTAATCAGTTTGTTTCAAATGCGTTGATTGATATGTATG 958
|||| | || ||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 899 TTAATCATAGAGGAATTGAGCTTAACCAGTTTGTTTCAAATGCTTTGATTGATATGTATG 958
Query 959 CTAAATGTGGGGATCTAGAGAATGCGACATCTGTGTTTGAGTCGTTAAGTCTGAGAAGTT 1018
| ||||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||
Sbjct 959 CGAAATGTGGGGATCTAGAGAATGCGACATCCGTGTTTGAGTCGATAAGTGTGAGAAGTG 1018
Query 1019 TAGCATGTTGGAACTCTATGATCTCTTGTCTTGCCATTCATGGGAAAGGCAACGAAGCTT 1078
|||||||||| |||||||||||||| ||||| ||||| |||||||||||||| |||||||
Sbjct 1019 TAGCATGTTGTAACTCTATGATCTCGTGTCTAGCCATACATGGGAAAGGCAAAGAAGCTT 1078
Query 1079 TAGAGATGTTCAGAACAATGGAGAGCTTAGATTTAAAGCCCGACGAGATCACTTTTCTGG 1138
||||||||||||| || ||||||||||||||||||||||| ||||||||||||||| | |
Sbjct 1079 TAGAGATGTTCAGCACGATGGAGAGCTTAGATTTAAAGCCTGACGAGATCACTTTTATAG 1138
Query 1139 CGGTTCTCACTGCTTGTGTCCATGGAGGCTTTCTAATGGAAGGTCTAAAGATATTCTCGG 1198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 CGGTTCTCACTGCTTGTGTCCATGGAGGCTTTCTAATGGAAGGTCTAAAGATATTCTCGG 1198
Query 1199 AGATGAAAACACAAGACGTGAAACCGAATGTAAAGCATTTTGGATGTTTGATACATCTCT 1258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 AGATGAAAACTCAAGACGTGAAACCGAATGTAAAGCATTTTGGATGTTTGATACATCTCT 1258
Query 1259 TGGGACGCTCCGGAAAACTGAAAGAAGCTTACAGATTGGTAAAAGAAATGCCA-GTGAAA 1317
||||||||||||| ||| ||||||||||||||||||||||||||||||||| | ||||||
Sbjct 1259 TGGGACGCTCCGGGAAATTGAAAGAAGCTTACAGATTGGTAAAAGAAATGC-ATGTGAAA 1317
Query 1318 CCGAATGATACAGTATTGGGAGCTTTACTTGGTGCATGTAAGGTTCATATGGATACAGAA 1377
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1318 CCGAACGATACAGTATTGGGAGCTTTGCTTGGTGCATGTAAGGTTCATATGGATACAGAA 1377
Query 1378 ATGGCTGAACAAGTGATGAAGATCATCGTGACTG-TGGGAAGCATCACTAACAGTGACAA 1436
|||||||||||||||||||||||||||| ||||| ||| |||||||||||||||| |||
Sbjct 1378 ATGGCTGAACAAGTGATGAAGATCATCGAGACTGCTGG-AAGCATCACTAACAGTTACAG 1436
Query 1437 CGAGAACCATCTTGCGTCGATATCGAACTTGTATGCACACACCGAGAGATGGGAAACAGC 1496
||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1437 CGAGAACCATCTTGCATCGATATCGAACTTGTATGCACACACCGAAAGATGGCAAACAGC 1496
Query 1497 TGAAGCATTGAGAGTAGAAATGGAGAAAAGAGGTCTTGAGAAATCCCCAGGGCTTAGCTC 1556
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1497 TGAAGCGTTGAGAGTAGAAATGGAGAAAAGAGGTCTTGAGAAATCCCCAGGGCTTAGCTC 1556
Query 1557 AGTAGTTTTGACCTGA 1572
| ||||||||||||||
Sbjct 1557 ACTAGTTTTGACCTGA 1572
> AT3G18970.1 | Symbols: MEF20 | mitochondrial editing factor
20 | chr3:6543318-6545432 REVERSE LENGTH=2024
Length=2024
Score = 69.4 bits (37), Expect = 1e-10
Identities = 60/71 (85%), Gaps = 2/71 (3%)
Strand=Plus/Plus
Query 297 TGCACGTAAGGTGTTTGACGAAATGCCTGAGAGAAACG-TAGCTACTTGGAACGCTATGA 355
|||| | |||||||||||||||||||||||||||| | | | ||| |||||||| ||||
Sbjct 810 TGCAAGGAAGGTGTTTGACGAAATGCCTGAGAGAACCTCT-GTTACATGGAACGCAATGA 868
Query 356 TTGGTGGGTAT 366
| ||||| |||
Sbjct 869 TAGGTGGATAT 879
> AT5G09950.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr5:3102877-3105864 REVERSE LENGTH=2988
Length=2988
Score = 62.1 bits (33), Expect = 2e-08
Identities = 33/33 (100%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 292 GTTTCTGCACGTAAGGTGTTTGACGAAATGCCT 324
|||||||||||||||||||||||||||||||||
Sbjct 157 GTTTCTGCACGTAAGGTGTTTGACGAAATGCCT 189
> AT4G13650.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr4:7938967-7942898 REVERSE LENGTH=3839
Length=3839
Score = 54.7 bits (29), Expect = 3e-06
Identities = 40/45 (89%), Gaps = 2/45 (4%)
Strand=Plus/Plus
Query 304 AAGGTGTTTGACGAAATGCCTGAGAGAAACG-TAGCTACTTGGAA 347
|||||||||||||||||||||||||||| || | |||||||||
Sbjct 421 AAGGTGTTTGACGAAATGCCTGAGAGAA-CGATTTTTACTTGGAA 464
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 77610042570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5