BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318898
Length=1179
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21580.1 | Symbols: | cobalt ion transmembrane transporters... 1803 0.0
> AT3G21580.1 | Symbols: | cobalt ion transmembrane transporters
| chr3:7601969-7603885 REVERSE LENGTH=1381
Length=1381
Score = 1803 bits (976), Expect = 0.0
Identities = 1117/1184 (94%), Gaps = 13/1184 (1%)
Strand=Plus/Plus
Query 1 ATGAATCAATCCAATCTTG-CAACACCAAGTCTCTCCCTCACCGTAACCCTAATCCCCAA 59
|||||||| |||||||||| ||| |||| ||||||||||||||||||||||||||||
Sbjct 166 ATGAATCACTCCAATCTTGCCAA-TCCAACAGTCTCCCTCACCGTAACCCTAATCCCCAA 224
Query 60 ACACCCAATTCGTCATCTCACAGCTCCAATTCATAACCGGAACCGGAATTTTGCAAACCC 119
|||||||||||||||||||||| ||||||||| ||||||||| | ||| |||||||
Sbjct 225 ACACCCAATTCGTCATCTCACATCTCCAATTCCTAACCGGAA-C-----TTTACAAACCC 278
Query 120 TAAGCTTTTCTTCCCGCTCCGGCTTAATGAGACT-C--CGTCCTCTCTCACCGCGAAAAG 176
||||||| |||||||||||||||||||||||||| | | ||||||||| ||||||||||
Sbjct 279 TAAGCTTCTCTTCCCGCTCCGGCTTAATGAGACTCCTTCCTCCTCTCTCGCCGCGAAAAG 338
Query 177 GGTTTTCGTGGTTAGAGCCACCGTCGACGGAGACGGAAAAACCGGTAATTGGGTGAACCG 236
||||||| | || ||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 339 GGTTTTCATTGTCAGAGCCACCGTCGACGGAGACGGTAAAACCGGTAATTGGGTGAACCG 398
Query 237 GTTACCAATTCCAGGACTCGGAGCCGAAAATGTCTTTAGATTGATTTCAAGCGCGACGGG 296
|||||||||||||||||| ||||||||||| ||||| ||||||||||||||||| || ||
Sbjct 399 GTTACCAATTCCAGGACTTGGAGCCGAAAACGTCTTCAGATTGATTTCAAGCGCCACCGG 458
Query 297 AAGTCCCATTGGACAATTCATATCGTCCCCTGTTACATTTCTCCATTCGGTGGATCCGAG 356
||||||||| ||||||||||||||||| ||||| ||||||||||| ||||||||||| ||
Sbjct 459 AAGTCCCATCGGACAATTCATATCGTCTCCTGTGACATTTCTCCACTCGGTGGATCCCAG 518
Query 357 AATCAAATTGGTATGGCTATTAACTCTAGTAGTTCTTCCAGCAAGAGCAAATATAGTTGT 416
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 519 AATCAAATTGGTATGGCTATTAACTCTAGTAGTTCTTCCAGCAAGAGCAAATCTAGTTGT 578
Query 417 GCGTTTAGGACTTG-TCGTATGCACAGCTCTTTTGTCAGTTCTTGTCCTCCCTAGACAAG 475
|||||||||||||| || |||||||||||||||||||| | ||||| ||||| |||||||
Sbjct 579 GCGTTTAGGACTTGTTC-TATGCACAGCTCTTTTGTCAATCCTTGTTCTCCCAAGACAAG 637
Query 476 TATGGATGGATCAATTGGCGAGAGTGTCGCTTCTTTCCGGAATTCTCTTCATAACTTTGG 535
| ||||| ||||||||||||||||||||||||||||| || |||||||||||||| ||||
Sbjct 638 TTTGGATAGATCAATTGGCGAGAGTGTCGCTTCTTTCGGGTATTCTCTTCATAACATTGG 697
Query 536 GGCTAGGTTCAGATGGTGCACCTCCAATGCTTCAATCAAGAACCCCACCTTCTTCAATCA 595
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 698 GGCTAGGTTCAGATGGTGCACCTCCAATGCTTCAATCAAGAACACCACCATCTTCAATCA 757
Query 596 CTAGCTTGCCTAATCTTCCCATGTCTTTGAGCGGTTATTCGTACATGTTACTGAAGCTTG 655
| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 758 CAAGCTTGCCTAATCTTCCCATGTCTTTAAGCGGTTATTCGTACATGTTACTGAAGCTTG 817
Query 656 GTCCTTTGCAATTCACAAGGAAAGGTTTGTCTGTTGGAAGTACAGCCGCATGCTTAACCT 715
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 818 GTCCTTTGCAATTCACAAGGAAAGGTTTGTCTGTTGGAAGCACAGCCGCATGCTTAACCT 877
Query 716 TTATTATCTTCCAAAGTGCTAGTATTTGCCTTGCAACCACAACACCAGAGCAACTTGCAC 775
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 878 TTATTATCTTCCAAAGTGCTAGTATTTGCCTTGCAACAACAACACCAGAGCAACTTGCAC 937
Query 776 TAGCTCTACGTTGGTTCTTGTTCCCGTTGACATATATTGGTGTTCCAGTCGGTGAAATTA 835
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 938 TAGCTCTACGTTGGTTCTTGTTCCCATTGACATATATTGGTGTTCCAGTCAGTGAAATTA 997
Query 836 TCCTCACGCTACTGCTTTCACTGAGATTCATTAATTTGGTTTTCGATGAGGTCCGAAGTG 895
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 998 TCCTCACGCTACTGCTTTCACTGAGATTCATTAATTTGGTTTTCGATGAGGTCCGAAGTG 1057
Query 896 TTTCACTCGGAATTGTATCCCGAAGAGTAAACTGGCAGCAGCTTACTGTTCTGGAGACAC 955
||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 TTTCACTGGGAATTGTATCGCGAAGAGTAAACTGGCAGCAGCTTACTGTTCTGGAGACAC 1117
Query 956 TTGATATTTTCGCGTCATTCATACGCCGCATTTTCAAGAATATATTTCGCCATGCGGAGC 1015
||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || |
Sbjct 1118 TTGATATTTTCGCGTCATTCATACGCCGCATCTTCAAGAATATATTTCGTCATGCCGAAC 1177
Query 1016 AAATATCACAGGCCATGATTGTTAGAGGCTTCAGAGGAGAGAGCAGTAGCCACAAGATCT 1075
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 AAATATCACAGGCCATGATTGTTAGAGGCTTCAGAGGAGAGAGCAGTAGCCACAAGATCT 1237
Query 1076 ACTTCTTCTCTGGCTCATCGAATAAGTTTGCAGATTTTGCGTCAGTATTGTGTTTAATCG 1135
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1238 ACTTCTTCTCTGGCTCTTCGAATAAGTTTGCAGATTTTGCATCAGTTTTGTGTTTAATCG 1297
Query 1136 GTGTAATATCAACCGCGCTCTTGTCTGAATACTTTCTTGTCTAA 1179
||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1298 GTGTAATCTCAACCGCACTCTTGTCTGAATACTTTCTTGTCTAA 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57881228385
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5