BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318899
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21590.1 | Symbols: | Senescence/dehydration-associated pro... 556 8e-158
> AT3G21590.1 | Symbols: | Senescence/dehydration-associated protein-related
| chr3:7604551-7605789 REVERSE LENGTH=682
Length=682
Score = 556 bits (301), Expect = 8e-158
Identities = 424/479 (89%), Gaps = 25/479 (5%)
Strand=Plus/Plus
Query 273 AGCCAAGGCCATCGCCGAAGGAACAGGGCATATCATCAAGGGAATCTTCACTTGTAGCAA 332
||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 204 AGCCAAGGCCATCGCGGTAGGAACAGGGCATATCATCAAGGGAATCTTCACTTGTAGCAA 263
Query 333 TTCTTACTCTAAGAAGATTCGCAAGGGAGGAACGATTGCTGAAGAGGTTGAGGAAAGAAG 392
|||||||||||||||||||| | ||| |||||||||||||||||||| ||||||||||||
Sbjct 264 TTCTTACTCTAAGAAGATTCACGAGGAAGGAACGATTGCTGAAGAGGATGAGGAAAGAAG 323
Query 393 TGGTGACATATCAGAAATTGGTGGAGGTGACAACAATGAAACTAAGAAGGAGAATAAACA 452
||||||||||||| |||||| |||||||| ||||||||||||||| ||| |||||||||
Sbjct 324 TGGTGACATATCACAAATTGATGGAGGTGGCAACAATGAAACTAATAAGAAGAATAAACT 383
Query 453 CAACAAAAATCTTCAAAGAGCGGAGAAGTTGTGGAAGGTGAGCGAGGCTATAGGAATGGC 512
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 384 CAACAAAAATCTTCAAAGAGCGGAGAAGCTGTGGAAGGTGAGCGAGGCTATAGGAATGGC 443
Query 513 GGTCATAGAAGGTGAAGATATGGTGAGCGGTTGGATGGTAGCTCCGGTGGTTAAATCGAG 572
|| | ||||||||| |||| |||||||| ||| |||| |||||||||||||||| ||||
Sbjct 444 GGCCTTAGAAGGTGGAGATTTGGTGAGCAGTTCGATGATAGCTCCGGTGGTTAAGTCGAA 503
Query 573 GTTAGGAAAGGCATTGTTATCCACTGCTCCAGGAGAGCTTATCTTGGCAT--C---A--C 625
|||||| |||||||||||||||||||||||||||||| |||||||||||| | | |
Sbjct 504 GTTAGGGAAGGCATTGTTATCCACTGCTCCAGGAGAGGTTATCTTGGCATCACTTGATTC 563
Query 626 --TTGAT------TCT--T-T--TC-----ATAATATAATTGGTGCTGCTGAAGCGGCAG 667
|| || | | | | || ||||||||||||||||||||||||||||||
Sbjct 564 TTTTCATAAACACTTTGATGTGGTCAATAGATAATATAATTGGTGCTGCTGAAGCGGCAG 623
Query 668 AGATACAAACTCATTCTGCCACATCCATGGCTGTTACTCGACTTGTGAGTAAGAGGTAA 726
| ||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 624 AAATACAAACTCATTATGCCACATCCATGGCTGCTACTAGACTTGTGAGTAAGAGGTAA 682
Score = 268 bits (145), Expect = 4e-71
Identities = 185/205 (90%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 1 ATGTCCTCACCAACCCAACAAAACCAATCTCCCCAAAAGGTGAACGAGGAAGTCTTGTTG 60
|||||| || |||||||| ||||||||||| ||||| ||||||||| ||||| ||||||
Sbjct 1 ATGTCCACATCAACCCAAGAAAACCAATCTGCCCAAGCGGTGAACGAAGAAGTTTTGTTG 60
Query 61 GAGAATCCCAATGACAGAGTCCATCTCGTCGATAAACCCGAACCGTTGGAGCTAGCCTTG 120
||||||||| || || ||||||| ||||||||||| |||||| ||||||||||||||||
Sbjct 61 GAGAATCCCGATTACGGAGTCCAAATCGTCGATAAATCCGAACTGTTGGAGCTAGCCTTG 120
Query 121 AGTTTCTTAGGGGGAGACGGAGAAATCATGGAAAACCCTGAGTTTCTAGGAGATTTCATG 180
||||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 121 AGTTTCTTAGGGGAAGACGGAGAAATCATGGAAAACCCTGAGTTTCTTGGAGATATCATG 180
Query 181 TGGGAGAAATCTTCAAGTGCTTCAG 205
||||||||||||||||| ||||||
Sbjct 181 GGGGAGAAATCTTCAAGTACTTCAG 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5