BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318900
Length=1125
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21600.1 | Symbols: | Senescence/dehydration-associated pro... 1729 0.0
> AT3G21600.1 | Symbols: | Senescence/dehydration-associated protein-related
| chr3:7606507-7608407 REVERSE LENGTH=1396
Length=1396
Score = 1729 bits (936), Expect = 0.0
Identities = 1063/1126 (94%), Gaps = 2/1126 (0%)
Strand=Plus/Plus
Query 1 ATGGGATGTTTCGGACCATCAAAGACTTCAAGAACAAGAAACCATGAAAAAGA-AACGAT 59
|||||||||||||||||||||||| ||||||||||||||||| ||||| | || || |||
Sbjct 44 ATGGGATGTTTCGGACCATCAAAGGCTTCAAGAACAAGAAACAATGAACATGACAA-GAT 102
Query 60 GACACGACAAAACCCATCTCCTCAACCTCAAACCATGAGAACCGAAGAAGCTCTGTTGCA 119
|||||||||||||| |||| ||||||||||||||||||| | ||||||| |||||||||
Sbjct 103 AACACGACAAAACCCCTCTCATCAACCTCAAACCATGAGAGCTGAAGAAGTTCTGTTGCA 162
Query 120 GATTCCTAGATGTAGAGTCCATCTCATAGACGAATCCGAAGCCGTGGAGCTTGCTTCCGG 179
||||||||||||||||||||||||||||| ||||||||| || ||||||||||| || ||
Sbjct 163 GATTCCTAGATGTAGAGTCCATCTCATAGGCGAATCCGAGGCGGTGGAGCTTGCCTCTGG 222
Query 180 TGATTTCAAGCTCGTTAAGGTCTCCGACAACGGTGTGACTCTAGCTATGATTGTAAGAAT 239
|||||||||||||||||||||||| ||||||||||| |||||||||||||| || |||||
Sbjct 223 TGATTTCAAGCTCGTTAAGGTCTCAGACAACGGTGTAACTCTAGCTATGATCGTGAGAAT 282
Query 240 CGGACATGACCTTCAGTGGCCAGTGATTAGAGACGAGCCAGTGGTGAAACTCGACGCACG 299
||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||
Sbjct 283 CGGACATGACCTTCAGTGGCCAGTGATTAGAGATGAGCCAGTGGTAAAACTTGACGCCCG 342
Query 300 TGACTACCTCTTCACACTTCCGGTTAAAGACGGTGATCCACTTAGCTACGGTGTCACTTT 359
||| ||||||||||| || |||||||||||||||||||||||||||||||| ||||||||
Sbjct 343 TGATTACCTCTTCACTCTCCCGGTTAAAGACGGTGATCCACTTAGCTACGGGGTCACTTT 402
Query 360 CTCCGGCGATGACAGAGACGTAGCCCTCGTGAACAGTCTGAAGTTGCTTGACCAATTCTT 419
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 403 CTCTGGCGATGACAGAGACGTAGCCCTCGTGAACAGTCTGAAGTTGCTTGACCAATTCTT 462
Query 420 GAGTGAGAATTCTTGTTTCTCGTCTACGGCTTCGAGTAAGGTTAACAATGGAATCGACTG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 GAGTGAGAATTCTTGTTTCTCGTCTACGGCTTCGAGTAAGGTTAACAATGGAATCGACTG 522
Query 480 GCAAGAGTTTGCGCCGAGGATTGAAGACTATAACAACGTTGTTGCTAAGGCTATTGCTGG 539
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 523 GCAAGAGTTTGCGCCGAGGATTGAAGATTACAACAACGTTGTTGCTAAGGCTATTGCTGG 582
Query 540 AGGAACAGGACATATCATTAGAGGAATCTTTAGTCTCAGTAATGCTTACTCTAACCAGGT 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 583 AGGAACAGGACATATCATTAGAGGAATCTTTAGTCTCAGTAATGCTTACTCTAACCAGGT 642
Query 600 TCACAAGGGAGGTGACATAATGATTACAAAGGCTGAAGAGAGTCAGAGAAATGGAGGTTA 659
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| ||||
Sbjct 643 TCACAAGGGAGGCGACATAATGATTACAAAGGCTGAGGAGAGCCAGAGAAATGGAAGTTA 702
Query 660 CAATAATGGAAACTCCAGTGGTAATGAGAAGAAAAATGGAATCAACACAAACCTTCAACG 719
||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 703 CAACAATGGAAACTCCAGTGGTAATGAGAAGAAAAATGGGATCAACACACACCTTCAACG 762
Query 720 AGTGAGGAAGCTGTCAAAGGCGACTGAGAATCTGAGCAAGACGATGTTGAATGGTGCGGG 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 AGTGAGGAAGCTGTCAAAGGCGACTGAGAATCTGAGCAAGACGATGTTGAATGGTGCGGG 822
Query 780 AGTTGTGAGTGGCTCTGTGATGGTCCCTGTGATGAAGTCGAAACCGGGGATGGCCTTCTT 839
||||||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 823 AGTTGTGAGCGGCTCTGTGATGGTCCCTATGATGAAGTCGAAACCAGGGATGGCCTTCTT 882
Query 840 CTCCATGGTTCCAGGGGAAGTCCTCTTGGCTTCACTTGACGCCCTTAATAAAATACTAGA 899
|| |||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 883 TTCGATGGTTCCAGGGGAGGTCCTCTTAGCTTCACTTGATGCCCTTAATAAAATACTAGA 942
Query 900 TGCAACTGAAGCCGCGGAGAGACAAACTCTATCTGCTACATCCAGGGCTGCTACCAGAAT 959
|||||||||||| || |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 943 TGCAACTGAAGCTGCAGAGAGACAAACTCTATCTGCAACATCCAGGGCTGCTACCAGAAT 1002
Query 960 GGTCAGTGAGAGGTTTGGAGAGAACGCAGGGGAGGCTACGGGAGACGTTCTAGCAACAGC 1019
||||||||||||||||||||| |||||||||||||| || ||||| ||||||||||||||
Sbjct 1003 GGTCAGTGAGAGGTTTGGAGATAACGCAGGGGAGGCCACCGGAGATGTTCTAGCAACAGC 1062
Query 1020 TGGCCACGCGGCTGGAACTGCCTGGAATGTTCTCAAGATCCGCAAGACTTTTTATCCTTC 1079
|||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1063 GGGCCACGCAGCTGGAACTGCCTGGAATGTTCTCAAGATCCGTAAGACTTTCTATCCTTC 1122
Query 1080 ATCTTCTCTCACATCCGGGGTCGTCAAAAATGCCCCAAGAAAGTGA 1125
||||||||| ||||| || ||||||||||||| ||||||||||||
Sbjct 1123 ATCTTCTCTTACATCAGGAATCGTCAAAAATGCTCCAAGAAAGTGA 1168
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55170398955
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5