BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318914
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21740.1 | Symbols: APO4 | Arabidopsis thaliana protein of u... 1568 0.0
> AT3G21740.1 | Symbols: APO4 | Arabidopsis thaliana protein of
unknown function (DUF794) | chr3:7662361-7664010 REVERSE LENGTH=1326
Length=1326
Score = 1568 bits (849), Expect = 0.0
Identities = 960/1015 (95%), Gaps = 2/1015 (0%)
Strand=Plus/Plus
Query 1 ATGTCGAATTGGAGACATAAAGTGTGGAGAAATTTGAGCTCAATTCAAG-GATCTTGTTA 59
||||||||||||||||||||| | |||||||| ||||||||| ||| || || || ||||
Sbjct 132 ATGTCGAATTGGAGACATAAACTATGGAGAAAATTGAGCTCATTTC-AGAGAGCTAGTTA 190
Query 60 CTCAACTACGCCTTCAAGAACCAACAAAATAAAGCTTGATGACCTTAGAAAAATCCGGCC 119
||||||||| ||||||||| ||||||| ||||||||||||||||||||||| |||||||
Sbjct 191 CTCAACTACATCTTCAAGAAACAACAAATTAAAGCTTGATGACCTTAGAAAACTCCGGCC 250
Query 120 AATGATTCTAAGGAGAATCGAAAATCGAGCAAAAGATTACCCGGTTAAAGAGATTGTTCC 179
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 251 AATGATTCTAAAGAGAATCGAAAATCGAGCTAAAGATTACCCGGTTAAAGAGATTGTTCC 310
Query 180 TGTGGCTGAAGAAATCCTTATAGCTAGAAAGAATCTACTCAGTAATGTCACTGCGCTTCT 239
||| ||||||||||||||||||||||||||||||||| ||||||| || | || |||||
Sbjct 311 TGTAGCTGAAGAAATCCTTATAGCTAGAAAGAATCTAATCAGTAACATCGCCGCTCTTCT 370
Query 240 TAAAGTGTTTCCTGTCTTGACATGCAAATTCTGCTCAGAAGTTTTTGTTGGTAAAGAAGG 299
||| ||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct 371 TAAGGTGTTTCCTGTCTTGACATGCAAATTCTGTTCAGAAGTGTTTGTTGGCAAAGAAGG 430
Query 300 ACACTTGATTGAGACATGTCGTAGTTATATAAGGCGTGGTAACAATAGGCTACACGAATG 359
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 431 ACATTTGATTGAGACATGTCGTAGTTATATACGGCGTGGTAACAATAGGCTACACGAATG 490
Query 360 GGTTCCAGGTTCCATAAACGATATACTTGTGCCCGTCGAATCTTATCACTTACACAACAT 419
||||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 491 GGTTCCAGGTTCCATAAACGATATACTTGTGCCAGTTGAATCCTATCACTTACACAACAT 550
Query 420 TTCTCAAGGTGTTATCAGACACCAACATAGGTTTGATTATGATCGTGTTCCCGCAATCTT 479
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 551 CTCTCAAGGTGTTATCAGACACCAAGAGAGGTTTGATTATGATCGTGTTCCCGCAATCTT 610
Query 480 GGAACTATGTTGTCAAGCAGGAGCCATCCATCCCGAAGAAATCCTGCAATATTCGAAAAT 539
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||
Sbjct 611 GGAACTATGTTGTCAAGCAGGAGCCATCCATCCTGAAGAAATCCTTCAATATTCGGAAAT 670
Query 540 TCATGATAACCCGCAAATCTCTGATGAAGATATCAGGAGTTTACCCGCTGGAGATCTCAA 599
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 671 TCACGATAACCCGCAAATCTCTGAGGAAGATATCAGGAGTTTACCCGCTGGAGATCTCAA 730
Query 600 ATATGTTGGGACAAACGCTCTAATGGCGTGGGAGAAAGTGAGAGCTGGTGTAAAGAAACT 659
|||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 731 ATATGTTGGGGCAAACGCTCTTATGGCGTGGGAGAAAGTGAGAGCTGGTGTGAAGAAACT 790
Query 660 ATTGCTTGTTTATCCTTCAAAAGTTTGCAAACGGTGCAAGGAGGTTCACGTGGGTCCGAG 719
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 791 ATTGCTTGTTTATCCTTCAAAAGTTTGCAAACGATGTAAGGAGGTTCATGTGGGTCCGAG 850
Query 720 TGGTCATAAAGCTCGGCTATGTGGTGTGTTCAAATACGAGAGTTGGCGCGGCACTCATTA 779
|||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 851 TGGTCATAAAGCTCGGTTATGTGGTGTGTTCAAATATGAGAGCTGGCGCGGCACTCATTA 910
Query 780 CTGGGAAAAAGCCGGTGTGAACGATTTGGTACCCGAGAAAGTGGTGTGGCACCGGAGGCC 839
||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||
Sbjct 911 CTGGGAAAAAGCCGGTGTGAATGATTTGGTACCCGAGAAAATGGTGTGGCACCGGAGGCC 970
Query 840 TCAGGACCCAGTGGTTCTTGTTGACGAAGGGCGGAGTTATTATGGACATGCCCCTGCTAT 899
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 971 TCAGGACCCAGTGGTTCTTGTTGACGAAGGGCGGAGTTATTATGGGCATGCCCCTGCTAT 1030
Query 900 TGTGAGCCTTTGTAGCCATGCCGGTGCCATTGTTCCTGTAAAATACGCTTGCAAGATGAA 959
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1031 TGTGAGCCTTTGTAGCCATACCGGTGCCATTGTTCCTGTAAAATACGCTTGCAAGATGAA 1090
Query 960 GCCCCAAGGTTTATCTTTTTCTTTCACTTATTCAGTTCCAAATCTCGAAACATAG 1014
|||||||||||||||||||||||||||| || ||||||||||||||||||| |||
Sbjct 1091 GCCCCAAGGTTTATCTTTTTCTTTCACTAATCCAGTTCCAAATCTCGAAACGTAG 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49681571383
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5