BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318927
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21880.1 | Symbols: | B-box type zinc finger protein with C... 898 0.0
> AT3G21880.1 | Symbols: | B-box type zinc finger protein with
CCT domain | chr3:7706748-7708093 FORWARD LENGTH=1095
Length=1095
Score = 898 bits (486), Expect = 0.0
Identities = 632/700 (90%), Gaps = 19/700 (3%)
Strand=Plus/Plus
Query 443 CTTATTCCATGGTGCCACACAGCTTCAATGT-CACTCAGAATTTCAGTGATCAA-TTGTC 500
||||||||||||| ||||||| | ||| | | ||||||||||||||||||| || |||||
Sbjct 407 CTTATTCCATGGTACCACACAACATCAGT-TACACTCAGAATTTCAGTGAT-AATTTGTC 464
Query 501 TTTCTTTTCCGTGGAATCTAAGGGATATCCTGATTTGGTTCTTAAACTTGAAGAAGGCGA 560
|||||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 465 TTTCTTTTCCACGGAATCTAAGGGATATCCTGATATGGTTCTTAAACTTGAAGAAGGAGA 524
Query 561 AGAAGATTTATGTGAAGGGCTTAACTTTGACAATGCGCCGTTAAACTTTGACGTTGGAGA 620
||||||| ||||||||||||||||||| || |||| || |||||||||||||| |||||
Sbjct 525 AGAAGATCTATGTGAAGGGCTTAACTTGGATGATGCACCATTAAACTTTGACGTAGGAGA 584
Query 621 TGATATTATCGGATGTTCTTTAGAAGAACCCATAGAACCGGACCATACAGTACCAAATTG 680
|||||||||||||||||| | ||||| || |||||||||||||||||| |||||||||||
Sbjct 585 TGATATTATCGGATGTTCATCAGAAGTACACATAGAACCGGACCATACGGTACCAAATTG 644
Query 681 CCTACTGATCGACAAGAATAACACATCC-G--TTACCGCCTCAAACTTTACTATAGACAA 737
|||| |||| ||||||| |||||||||| | |||||| ||| ||||||||| |||||||
Sbjct 645 CCTATTGATTGACAAGACTAACACATCCAGCTTTACCGGCTCCAACTTTACTGTAGACAA 704
Query 738 --CAC-ATCCGCATCGTCACCAGGACAACAAATGAACATCAACACTGGACTTCCGCTTCC 794
| | | |||||| ||||||| || ||||||||||||||||||||||||| ||||||
Sbjct 705 GGCTCTAGAGGCATCGCCACCAGGTCAGCAAATGAACATCAACACTGGACTTCAGCTTCC 764
Query 795 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCGCTTAACATCTCCAACGTCACAGG 854
|||||||||||||||||||||||||||||||||||| ||||||| | | || | ||
Sbjct 765 TCTATCACCTGTCTTGTTCGGACAAATCCATCCATCTCTTAACA--T-C-AC-T----GG 815
Query 855 TGAAAGCAATGCAGCTGATTACCAGGATTGTGGGATGCCTCCAGGGTTTATAACGAGTGA 914
||||| ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||
Sbjct 816 TGAAAACAATGCAGCTGATTACCAGGATTGTGGGATGTCTCCAGGGTTTATAATGAGTGA 875
Query 915 AGCACCATGGGAATCGAATCTTGAAGTTAGTTGTCCACAAGCAAGAACCCAAGCTAAGTT 974
||| ||||||||| ||||| ||||||||||||||||||||||||||| | | ||||||||
Sbjct 876 AGCGCCATGGGAAACGAATTTTGAAGTTAGTTGTCCACAAGCAAGAAACGAGGCTAAGTT 935
Query 975 GAGATACATGGAGAAGAAATTAAAGCGCTCTTTTGGGAAACAGATTCGATATGCATCGCG 1034
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 936 GAGATACAAGGAGAAGAAATTAAAGCGCTCTTTTGGGAAACAGATTCGATATGCATCTCG 995
Query 1035 CAAAGCAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAA 1094
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 996 CAAAGCAAGAGCTGACACGAGGAAAAGAGTGAAAGGAAGATTTGTGAAAGCTGGTGACAG 1055
Query 1095 TTATGATTATGACCCATCATCACCGACGACAAACAATTGA 1134
|||||||||||| ||||||||||||||||| |||||||||
Sbjct 1056 TTATGATTATGATCCATCATCACCGACGACGAACAATTGA 1095
Score = 536 bits (290), Expect = 2e-151
Identities = 363/399 (91%), Gaps = 2/399 (1%)
Strand=Plus/Plus
Query 1 ATGGAGCCAAAGTGTGACCACTGTGCAACTTCACAAGCAGTGATTTACTGCAAATCCGAT 60
|||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||
Sbjct 1 ATGGAGCCAAAGTGTGACCATTGTGCAACCTCGCAAGCATTGATTTACTGCAAATCCGAT 60
Query 61 TTGGCTAAACTATGCCAAAACTGCGACTTCCACGTACACTCTGCGAATCCTCTATCTCAT 120
|||||||||||||||| |||||||||| |||| |||||||||||||||||||| |||||
Sbjct 61 TTGGCTAAACTATGCCTAAACTGCGACGTCCATGTACACTCTGCGAATCCTCTGTCTCAC 120
Query 121 AGACAC-TCACGCTCTTTGATCTGCCAGAAATGCTTCTCACAGCCAGCCGTAATCCGCTG 179
|| ||| | |||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 121 AGGCACAT-ACGCTCTTTGATCTGCGAGAAATGCTTCTCACAGCCAGCCGCAATCCGCTG 179
Query 180 TCTCGGTGAGAAGGTTTCATATTGCCAAAGATGTCATTGGCACGCAAGCAACTGCTCGGA 239
||||| |||||||||||||| |||||| ||||||||||||||| ||||||||| |||||
Sbjct 180 TCTCGACGAGAAGGTTTCATACTGCCAAGGATGTCATTGGCACGAAAGCAACTGTTCGGA 239
Query 240 TTTAGGACACAGAGTTCAGAGGTTGAACCCTTTCTCTGGTTGTCCTTCTCCAACAGATTT 299
|||||||||||||||||||| ||||| ||||||||||||||||||||||| ||||||||
Sbjct 240 GTTAGGACACAGAGTTCAGAGCTTGAATCCTTTCTCTGGTTGTCCTTCTCCTACAGATTT 299
Query 300 TGTCAAAATGTGGTCTTCAATTCTTGAACCTTCTGTCTCTAGTTTGGTTAGTCCGTTTGT 359
| || ||||||||||||||||||||||||| ||||||| | ||| |||||||||| ||
Sbjct 300 TAACAGAATGTGGTCTTCAATTCTTGAACCTCCTGTCTCCGGCTTGCTTAGTCCGTTCGT 359
Query 360 TGGTTCTTTGCCCTTGAATGATCCCAATAATACCATGTT 398
||||||||| ||||||||||||| ||| |||||||||||
Sbjct 360 TGGTTCTTTTCCCTTGAATGATCTCAACAATACCATGTT 398
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5