BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318931
Length=771
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21945.1 | Symbols: | Receptor-like protein kinase-related ... 512 2e-144
AT2G31620.1 | Symbols: | Receptor-like protein kinase-related ... 390 9e-108
AT3G21960.2 | Symbols: | Receptor-like protein kinase-related ... 372 3e-102
> AT3G21945.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7732458-7733294 FORWARD LENGTH=473
Length=473
Score = 512 bits (277), Expect = 2e-144
Identities = 311/328 (95%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 444 GGATGTGAGCGGTGATACAAATTCGTTCAACGAGAAGACGAGGGCTCTCCTCTATAAGCT 503
|||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||
Sbjct 132 GGATGTGAGCGGTGATGCAAAATCATTCAACGAGAAGACGAGGACTCTCCTCTATAAGCT 191
Query 504 GAAGGAGAAAGCAAGTAGTAAAGAAAACATCCCCAACAAGAAAAATTACTTATATGCAAC 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 192 GAAGGAGAAAGCAAGTAGTAAAGAAAACATCCCCAACAAGAAAAATTACTTATATGCAAC 251
Query 564 AGGGGAGGAAAGTCTCGGGAAGATGAAATTGTACGCAATGGTGCAGTGTACACAAGACTT 623
|||||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 252 AGGGGAGGAAAGTCTCGGGAAGATGAAACTGTACGCAATGGTGCAATGTACGCAAGACTT 311
Query 624 ATCAATAAAAAATTGTAGTGTGTGTTTGAACTGGATTCTTGCGAAGTTTCCCAAATGCTG 683
|||||| |||||||||| ||||||||||||||||||||| | |||| |||||||||| ||
Sbjct 312 ATCAATTAAAAATTGTAATGTGTGTTTGAACTGGATTCTGGGGAAGCTTCCCAAATGTTG 371
Query 684 CAACGGTAAACAAGGAGGAAGATTTTTGAGTACAAGTTGTAATTTTAGGTATGAGCTTTA 743
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 372 CAACGATAAACAAGGAGGAAGATTTTTGAGTACGAGTTGTAATTTTAGGTATGAGCTTTA 431
Query 744 CCCCTTTGTAAAACTTACGACTAGTTAA 771
|| |||||||||||||||||||| ||||
Sbjct 432 CCTCTTTGTAAAACTTACGACTATTTAA 459
Score = 211 bits (114), Expect = 7e-54
Identities = 126/132 (95%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 196 ATGATTTCTATCTCAATTTTAGGCGACGTTGTCGTTTTTAGCGGTGATAATTCCATCTAC 255
||||| ||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||
Sbjct 1 ATGATCTCTATCTCAATTTTAGGTGACGTTGTCGTCTTTAGCGGTGACAATTCCATCTAC 60
Query 256 GTCAAGCTCCAGTGCCGGGGGGACTCCTCCACATCCAAGTGCCGCTCTTGCCTTGATACC 315
||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||
Sbjct 61 GTCAAGCTCCAGTGCCGGGGGGACTCCTCCACATCCACGTGCCGCTCTTGCCTTGACACC 120
Query 316 GCCTTCTCTGGG 327
||||||||||||
Sbjct 121 GCCTTCTCTGGG 132
> AT2G31620.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr2:13451991-13452908 REVERSE LENGTH=768
Length=768
Score = 390 bits (211), Expect = 9e-108
Identities = 587/759 (77%), Gaps = 63/759 (8%)
Strand=Plus/Plus
Query 41 CTATCTTGGCCATGGTGGCCATGCAACTCTCTTTTGTACAGTGTGTTTTGTCCCTAAACC 100
||||||||| | |||||||||||||| |||||||| | || ||||||||||||||| |
Sbjct 26 CTATCTTGGTCGTGGTGGCCATGCAATTCTCTTTTATCCACAATGTTTTGTCCCTAAATC 85
Query 101 AAACAAATGAGTATCTACACCACATATGCCTTAATC-GTCAAGGAACATACAAGTC-AGG 158
| || ||| |||||| || ||||||||| | || | || |||||| ||||||| | | |
Sbjct 86 AGACCAATTCGTATCTGCAACACATATGCATCAA-CAGTGAAGGAAAATACAAGGCAAAG 144
Query 159 TAGTAAAGACGAGAG-AGATCTTAACA-ATC-TCATC--CA-AATG----A-TTTCTA-T 206
| | | ||||||| ||| || || | ||| || || || ||| | |||||
Sbjct 145 -AATTCATACGAGAGCAGA-CTCAA-AGATCATC-TCGACAGTATGTCTAACATTCTAGA 200
Query 207 CT-CAATTTTAGGCGACGTTGTCGTTTTTAGCGG-TGATAATTCCAT-CTACGTCAA-GC 262
|| | ||| | | ||| ||| | | | |||| | || | || | |||| |||| ||
Sbjct 201 CTACGGTTTCA-TCCACGGTGTTGGTGGT-GCGGATTCTAGTACC-TACTACATCAAGGC 257
Query 263 TCCAGTGCCGGGGGGACT-CCTCC-ACATCCAAGTGCCGCTCTTGCCT-TGATACCGCCT 319
||| || ||||| || | ||||| | ||||||||||||||||||||| | ||||||||
Sbjct 258 -CCAATGTCGGGGAGA-TGCCTCCGA-ATCCAAGTGCCGCTCTTGCCTCT-TTACCGCCT 313
Query 320 TCTCTGGG------A--AGATGTCCCAACAACA-A---AGAATAATATGGTACGACAACT 367
|||||||| | |||||||| ||||||| | ||||||||||||||||||||||
Sbjct 314 TCTCTGGGATTCTTAGGAGATGTCCGAACAACAGAGGGAGAATAATATGGTACGACAACT 373
Query 368 GTGTTCTC-ACAATTT-TAACG-TTTCATACGTATG-GCAAGATCGATTACCAGAACAAT 423
|| ||||| || |||| | | | | |||| || | | ||||| |||| | || || ||
Sbjct 374 GTTTTCTCTAC-ATTTCCGA-GATAT-ATACCTACGAG-AAGATTGATTTCAAGCACTAT 429
Query 424 TTCTATATTTC-CAATG-CAAAGGATGTGAGCGGTGATACAAA-TTCGTTCAACGAGAAG 480
|| ||| || | ||||| |||| ||||||||||| ||| ||| || ||||||| ||||
Sbjct 430 TTGTAT-TTGCACAATGCCAAA-GATGTGAGCGGCAATAAAAAGTT-GTTCAACAAGAAC 486
Query 481 ACGAGGGCTCTCCTCTATAAGCTGAAGGAGAAAGCAAGTAGTAAAGAA-AACATCCCCA- 538
|| | ||||||||| ||||||| ||||||||||||| | |||||||| || | || |
Sbjct 487 ACAAAGGCTCTCCTAGATAAGCTCAAGGAGAAAGCAATTCGTAAAGAACAAGAGCCTTAC 546
Query 539 ACAAGAAAAATTACTTATATGCAACAGGGGAGGAAAGTCTCGGGAAGATGAAATTGTACG 598
||||| | | ||| | |||||| | ||||||||||||||||||| || ||||||||| |
Sbjct 547 ACAAG--AGACTACATGTATGCAGCGGGGGAGGAAAGTCTCGGGACGACGAAATTGTATG 604
Query 599 CAATGGTGCAGTGTACACAAGACTTATCAATAAAAAATTGTAGTGTGTGTTTGAACTGGA 658
||| ||||||||||||||||||||||| | |||||||| |||||||||||| | | ||
Sbjct 605 GGATGATGCAGTGTACACAAGACTTATCAGTTAAAAATTGCAGTGTGTGTTTGGATTCGA 664
Query 659 TTCTTGCGAAGTTTCCCAAATGCTGCAACGGTAAACAAGGAGGAAGATTTTTGAGTACAA 718
|| |||| ||| |||||| |||||||||||||||||||||||||||| |||||| | | |
Sbjct 665 TTATTGCAAAGCTTCCCAGATGCTGCAACGGTAAACAAGGAGGAAGAGTTTTGAATCCGA 724
Query 719 GTTGTAATTTTAGGTATGAGCTTTACCCCTTTGTAAAAC 757
|||||| ||||||||| ||||| || || ||||||||||
Sbjct 725 GTTGTACTTTTAGGTACGAGCTCTATCCTTTTGTAAAAC 763
> AT3G21960.2 | Symbols: | Receptor-like protein kinase-related
family protein | chr3:7737156-7739542 FORWARD LENGTH=1326
Length=1326
Score = 372 bits (201), Expect = 3e-102
Identities = 602/783 (77%), Gaps = 77/783 (10%)
Strand=Plus/Plus
Query 1 ATGTCTTCAT-C-CTT-TGTAACAAAACGACTC-T-TTTCGGTCC-CTATCTTGGCCATG 54
||||||| || | ||| |||||| |||| | || | |||||| || | || || |||||
Sbjct 1 ATGTCTTTATCCTCTTCTGTAACGAAAC-A-TCTTATTTCGG-CCTCCATATTAGCCATA 57
Query 55 GTGGCCATGCAACTCTCTTTTGTACAGTGTGTTTTGTCCCTAAACCAAACAAATG-AGTA 113
||||| ||||||||| ||| |||||| ||||||| ||||||||| | || |||| | ||
Sbjct 58 GTGGCAATGCAACTCCCTTCTGTACACAGTGTTTTATCCCTAAACGAGACCAATGCA-TA 116
Query 114 TCTACACCACATATGCCTTAATC-GTCAAGGAACATACAAGTCAGGTAGTAAAGACGAG- 171
||| |||||||||||| |||| | || |||| |||| |||||| || ||| | |||||
Sbjct 117 TCTGCACCACATATGCATTAA-CGGTGAAGGGACATTCAAGTCGGGGAGTCCATACGAGA 175
Query 172 -AGAGATCTTAACAATCTCATCCAAATGATTTCTATCTCAAT--TTTAGGCGACG-TTGT 227
||| ||| ||||| ||||| |||||| | | || || |||| | | | | |
Sbjct 176 AAGAAATC-AAACAA-CTCAT-----TGATTT-TTTGTC-ATCGTTTA-TCAAAGACTAT 225
Query 228 CGTTTT-T--A--GCG---GTGATAAT--T-CC------ATCTACGTCAAGCTCCAGTGC 270
||||| | | ||| ||| || | | || ||| |||||||| ||||||||
Sbjct 226 AGTTTTGTCCACGGCGTTAGTGGTATTGGTCCCGATGATATCAACGTCAAGTTCCAGTGC 285
Query 271 CGGGGGGACT-CC-TCCACATCCAAGTGCCGCTCTTGCCTTGATACCGCCTTCTCTG-G- 326
|| || || | || | || | ||||||||||||||||||| | ||||||||||| | |
Sbjct 286 CGAGGCGA-TACCTTACA-AGCCAAGTGCCGCTCTTGCCTCGCCACCGCCTTCTCCGAGA 343
Query 327 ---G-A--AGATGTCCCAACAAC-AA---AGAATAATATGGTACGACAACTGTGTTCTCA 376
| | | |||||| |||||| || ||||||||||||||||| |||||| ||||
Sbjct 344 TTCGTAGTAAATGTCCGAACAACAAAGGGAGAATAATATGGTACGATAACTGTCATCTC- 402
Query 377 CAATTTTAACGT--TTC-ATACGTATGGCAAGATCGATTACCAGAACAATTTCTATATTT 433
| ||| ||| || |||| |||||| ||||||||||| |||||||||||||||| |
Sbjct 403 GACCTTT--CGTCAATCTATACATATGGCCAGATCGATTACAAGAACAATTTCTATATGT 460
Query 434 CCAATGCAAAGGATGTGAGCGGTGATACAAATTCGTTCAACGAGAAGACGAGGGC-TCTC 492
||| || ||||||||||| || |||| ||| || ||| || |||| | || ||| | ||
Sbjct 461 ACAACGCGAAGGATGTGAGGGGCGATAAAAAGTCTTTCTACAAGAACATGAAGGCAT-TC 519
Query 493 C-TCTATAAGCTGAAGGAGAAAGCAAGTAGTAAAGAAAACATCCCCAACAAGAAAAATTA 551
| || ||||||| |||| ||||||||||||||| ||||||| ||| || |||| | ||
Sbjct 520 CTTC-ATAAGCTAAAGGCGAAAGCAAGTAGTAAGGAAAACAAACCCTACGTGAAAGACTA 578
Query 552 CT-TATATGCAACAGGGGA-GGAAAGTCTCGGGAAGATGAAATTGTACGCAATGGTGCAG 609
| | |||||| || || | ||||||||| |||| | |||||||||||||||||||||||
Sbjct 579 -TATGTATGCAGCA-GGAAGGGAAAGTCTTGGGACGGTGAAATTGTACGCAATGGTGCAG 636
Query 610 TGTACACAAGACTTATCAATAAAAAATTGTAGTGTGTGTTTGAACTGGATTCTTG-CGAA 668
||||| || |||||||| | |||||||| | |||||||||| |||||||| | | ||||
Sbjct 637 TGTACGCAGGACTTATCGCTTAAAAATTGCACTGTGTGTTTGGACTGGATTAT-GACGAA 695
Query 669 GTTTCCCAAATGCTGCAACGGTAAACAAGGAGGAAGATTTTTGAGTACAAGTTGTAATTT 728
| ||||| |||||||||| |||||||||||||||||| |||||||| |||| ||||||||
Sbjct 696 GCTTCCCGAATGCTGCAATGGTAAACAAGGAGGAAGAGTTTTGAGTCCAAGCTGTAATTT 755
Query 729 TAG 731
|||
Sbjct 756 TAG 758
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37474673662
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5