BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318935
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
AT3G21985.1 | Symbols: | pseudogene, similar to putative recep... 523 9e-148
> AT3G21985.1 | Symbols: | pseudogene, similar to putative receptor-like
serine-threonine protein kinase, contains Pfam profile:
PF01657 Domain of unknown function; blastp match of 36%
identity and 1.9e-19 P-value to GP|18076589|emb|CAC83607.1||AJ306629
putative receptor-like serine-threonine protein
kinase {Solanum tuberosum} | chr3:7746953-7748137 FORWARD LENGTH=1185
Length=1185
Score = 523 bits (283), Expect = 9e-148
Identities = 313/328 (95%), Gaps = 0/328 (0%)
Strand=Plus/Plus
Query 1 ATGTCTACAACTTTTGGATCGGTCCCTATCTTGACCGTGGTAGCCATACAACTCTTTCTT 60
|||| | ||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 171 ATGTTTTCAACTTTTGGATCGGTCCCTATCTTAACCGTGGTGGCCATACAACTCTTTCTT 230
Query 61 ATACGCAATGTTTTGTCCCTGAACCTTACTAATGCGTATCTGCACCACAAATGCAACAAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 231 ATACGCAATGTTTTGTCCCTGAACCTTACTAATGCGTATCTGCACCACAAATGTAACAAC 290
Query 121 ACCCAAGGGATATACAAGCGGGGAACTGCGTTCGAGAAAAATCTAAACATAGCCCTCCGT 180
||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||
Sbjct 291 ACCCAAGGGATATACAAGCGGGGAAGTGCGTTCGAGAAAAATCTGAACATAGCCCTCCGT 350
Query 181 ACTGTCATTTTTAATGGCGATTTTCGCACCGGTTTCCGATATGGCGATGTAGGTGAGGAT 240
||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 351 ACTGTCATTTTTAATGGCGATTTTCGCACTGGTTTCCGATATGGGGATGTAGGTGAGGAT 410
Query 241 CCAAATACTGTCTTTGTCATGTACCAATGTCGCGGTGACTCCTATTGGTCCAACTGCCGA 300
|| ||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 411 CCCAATACCGTCTTTGTTATGTACCAATGTCGTGGTGACTCCTATTGGTCCAACTGCCGA 470
Query 301 ACTTGCGTCACCACCGCCCTCTCAGGGG 328
||||| ||||| ||||||||||||||||
Sbjct 471 ACTTGTGTCACTACCGCCCTCTCAGGGG 498
Score = 481 bits (260), Expect = 5e-135
Identities = 304/326 (93%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 430 ATCGATTACGAGAACGATTTCTTTTTGTCAAACCCAAAAAACGTGAGCAATCGAGAGTTG 489
|||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||
Sbjct 804 ATCGATTACGAGAACGATTTCTATTTGTCCAACCCAAAGAACGTGAGCAATCGAGAGTTG 863
Query 490 TTCAACAGGGAGACATCGGCTCTCCTTGAGAAGCTAACAAATAAAGCGACCGATAAAAAG 549
||||||||||||||||| |||||||||||||||||||||| |||||| || |||||||||
Sbjct 864 TTCAACAGGGAGACATCCGCTCTCCTTGAGAAGCTAACAACTAAAGCCACTGATAAAAAG 923
Query 550 AACATAGATGGTGCCAATCAATTGGTTTTGTACGCAGCGGGGGAGAAGAGAATTGGGACG 609
|||||||| |||||||||||||||||| |||| || || || ||||||||||||||||||
Sbjct 924 AACATAGACGGTGCCAATCAATTGGTTCTGTATGCGGCAGGAGAGAAGAGAATTGGGACG 983
Query 610 AAGAAGGTGTACGCAATGGTGCAGTGTACGAAAGACTTAGTGTTTACAACTTGCTCATCG 669
|| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 984 AAAAAGGTGTACGCAATGGTGCAGTGTACAAAAGACTTAGTGTTTACAACTTGCTCTTCG 1043
Query 670 TGTTTGGAATGGATTTTCAGGATGTATTCAGAGTGCTGTGATGGTAAACAAGGAGGAAGA 729
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1044 TGTTTGGAATGGATTTTCAGGATGTATTCAGACTGTTGTGATGGTAAACAAGGAGGAAGA 1103
Query 730 GTTTTAAGTACTAGTTGTAACTTTAG 755
||||| |||| |||||||| |||||
Sbjct 1104 GTTTTGGGTACGAGTTGTAATTTTAG 1129
Score = 163 bits (88), Expect = 2e-39
Identities = 98/103 (95%), Gaps = 0/103 (0%)
Strand=Plus/Plus
Query 327 GGCTAGTACAAAAGCACTATTATATGAAATTAAACCATACAATATTGTTTTTGACTGTGG 386
|||||||||||| |||||||||||||||||| |||||| |||||||||| ||||||||||
Sbjct 624 GGCTAGTACAAATGCACTATTATATGAAATTCAACCATGCAATATTGTTCTTGACTGTGG 683
Query 387 TGTTGATATATATGGATATGCATATGACAGCTTCGAAAGAGAT 429
||||||||| |||||||||||||||||||||||||||||||||
Sbjct 684 TGTTGATATTTATGGATATGCATATGACAGCTTCGAAAGAGAT 726
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38981698072
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5