BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318936
Length=762
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22050.1 | Symbols: | Domain of unknown function (DUF26) | ... 464 5e-130
AT3G22057.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 433 1e-120
AT3G22030.1 | Symbols: | Receptor protein kinase-related | chr... 272 3e-72
AT3G22053.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 224 9e-58
> AT3G22050.1 | Symbols: | Domain of unknown function (DUF26)
| chr3:7764131-7765143 FORWARD LENGTH=777
Length=777
Score = 464 bits (251), Expect = 5e-130
Identities = 619/791 (78%), Gaps = 47/791 (6%)
Strand=Plus/Plus
Query 1 ATGTACTCTTCATATTCTCTATCCAAACGCCT-AGTTTCTATCCCTATCTTGGCTATACA 59
||||||||||||||||||||||| |||||||| | ||| | |||||||| |||| || ||
Sbjct 1 ATGTACTCTTCATATTCTCTATCAAAACGCCTCA-TTTATGTCCCTATCCTGGCCATCCA 59
Query 60 ACTCCTTCTCATACGCAGCGTCTCGTCACTGAACCTTACCAATGACTATCTTAACCACAA 119
| |||| ||| |||||||||| || ||||| |||||||||||||| ||||||||||||||
Sbjct 60 ATTCCTCCTCGTACGCAGCGTTTCATCACTAAACCTTACCAATGAGTATCTTAACCACAA 119
Query 120 ATGCCTCGTCAGTCAAGGGAAATATAGGCCTGGAGATAAGTACGAGGACAACCTCAACTT 179
|||| |||||||| |||||||||||| || ||| |||||||||||| | ||||||||| |
Sbjct 120 ATGCTTCGTCAGTGAAGGGAAATATAAGCATGGTGATAAGTACGAGAATAACCTCAACGT 179
Query 180 TCTC-AC-CCAA-GT-CTTATCCTATAAT-TTTCCGGATGG-TTTCATACACATCTCTTA 233
|||| || || || ||| || ||| || || | | || |||| ||||| | ||| |
Sbjct 180 TCTCAACAAGAATGTCCTT-TCTTATGATCTTACTAG-CGGTTTTC-TACACGTTTCTCA 236
Query 234 TGGCGAAGCACCCAG-TTTCGTCGCCGTCATATTACAGTGCCGCGGCGACTCCTACGACT 292
||||| || || | || |||| || |||||||||| || || |||||||||| || |
Sbjct 237 TGGCG-AGGGTCCTGATTCCGTCACCATCATATTACAATGTCGTGGCGACTCCTTCGGGT 295
Query 293 CCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGGCTTCGTAGGAGATGTCAGAGGA 352
| || |||| ||| |||||| |||||||| | |||| ||| ||||||||||||||| |
Sbjct 296 CGAATTGCCGCTCTTGCTATACCACCGCCATCGACGGGTTTCATAGGAGATGTCAGAGAA 355
Query 353 ACAAAGGAAGAGTAATATGGTACGATCAATGTTTTC-TCTTCATTAATTCGATCAAA--T 409
||||||| || | ||||||||||| |||||||||| | || ||| | ||||||||
Sbjct 356 ACAAAGGGGGAATTATATGGTACGACCAATGTTTTCTTGTT-ATTTCTACGATCAAACCC 414
Query 410 CATC-CCCGAGGAAGAACGATTACAGGAATGCTTTCTCTATGCACAACCCAAACAACATG 468
|| | ||| ||||||| |||| || || ||||||| |||||||||||||||||| ||
Sbjct 415 CAACTCCCAAGGAAGATTGATTTCAAAAACACTTTCTCAATGCACAACCCAAACAACGTG 474
Query 469 ATCAAG-G-A-CACGGAATTGTTCAACAAGAAAACGAA-GGATTTCCTCTACGAGCTCAT 524
| | || | | || || || ||| |||||| || || ||||||||||||| |||| |
Sbjct 475 AGC-AGTGAACCA-GG-ATCGTTTGACAAGATGAC-AAGGGATTTCCTCTACAAGCTGGT 530
Query 525 GTTGGAAGCCACTACACCCAA-C--AG--G-ACA--ATG-ATGC-T-TTACGCAGCAGGG 573
| | ||||| || | |||| | | | ||| | | | | | ||| || || |||
Sbjct 531 GCAGAAAGCCTCT-TATCCAACCGTGGTCGAACACCA-GTCTACATATTATGCTGCGGGG 588
Query 574 GAGAAGAAGCTAGGGACAAA-GAAATTGTATGCAATGGTGCAGTGTGC-GCAAGACATAT 631
||||| || || |||| ||| ||| ||||||||||| |||||||||| | |||||||
Sbjct 589 GAGAAAAAACTCGGGA-AAAGGAAGCTGTATGCAATGATGCAGTGTGCATC-GGACATAT 646
Query 632 TGCGATGTAAGGGTTGTTTGGAATGGAGTATCA-ATGAGCTTTCCGAGTGCTGCCACAGT 690
||| |||||||| ||||||||||||| |||||| | |||||| || |||| || | ||
Sbjct 647 TGCAATGTAAGGTTTGTTTGGAATGGTGTATCAGA-GAGCTTCCCAAGTGTTGTGATGGT 705
Query 691 AAACAAGGAGCAAGATTTTTGGGAACAGAG-TGTACTCTTAGGTATGAGCTATACCCTTT 749
|||||||||| ||| ||||||| | ||| |||| ||||||||||||||||||||||||
Sbjct 706 AAACAAGGAGGGAGAATTTTGGGTA-TGAGTTGTAATCTTAGGTATGAGCTATACCCTTT 764
Query 750 TCTTAGGGGTT 760
|||| || |||
Sbjct 765 TCTTCGGCGTT 775
> AT3G22057.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: Domain of unknown function (DUF26) (TAIR:AT3G22050.1);
Has 182 Blast hits to 182 proteins in 3 species:
Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants
- 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr3:7769346-7770261 FORWARD LENGTH=525
Length=525
Score = 433 bits (234), Expect = 1e-120
Identities = 253/262 (97%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 408 ATCATCCCCGAGGAAGAACGATTACAGGAATGCTTTCTCTATGCACAACCCAAACAACAT 467
||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||||||
Sbjct 265 ATCATCCCCAAGGAAGAACGATTAAAGGAATGTTTTCTCTATGCACAACCCAAACAACAT 324
Query 468 GATCAAGGACACGGAATTGTTCAACAAGAAAACGAA-GGATTTCCTCTACGAGCTCATGT 526
|||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 325 GATCGAGGACACGGAATTGTTCAACAAGAAAAC-AAGGGATTTCCTCTACGAGCTCATGC 383
Query 527 TGGAAGCCACTACACCCAACAGGACAATGATGCTTTACGCAGCAGGGGAGAAGAAGCTAG 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 384 TGGAAGCCACTACACCCAACAGGACAATGATGCTTTACGCAGCAGGGGAGAAGAAGCTAG 443
Query 587 GGACAAAGAAATTGTATGCAATGGTGCAGTGTGCGCAAGACATATTGCGATGTAAGGGTT 646
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 444 GGACAAAGAAATTGTATGCAATGGTACAGTGTGCGCAAGACATATTGCGATGAAAGGGTT 503
Query 647 GTTTGGAATGGAGTATCAATGA 668
||||||||||||||||||||||
Sbjct 504 GTTTGGAATGGAGTATCAATGA 525
Score = 324 bits (175), Expect = 9e-88
Identities = 183/187 (98%), Gaps = 0/187 (0%)
Strand=Plus/Plus
Query 1 ATGTACTCTTCATATTCTCTATCCAAACGCCTAGTTTCTATCCCTATCTTGGCTATACAA 60
|||||||||||||||||| |||||||||| || |||||||||||||||||||||||||||
Sbjct 13 ATGTACTCTTCATATTCTTTATCCAAACGTCTTGTTTCTATCCCTATCTTGGCTATACAA 72
Query 61 CTCCTTCTCATACGCAGCGTCTCGTCACTGAACCTTACCAATGACTATCTTAACCACAAA 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 73 CTCCTTCTCATACGCAGTGTCTCGTCACTGAACCTTACCAATGACTATCTTAACCACAAA 132
Query 121 TGCCTCGTCAGTCAAGGGAAATATAGGCCTGGAGATAAGTACGAGGACAACCTCAACTTT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 TGCCTCGTCAGTCAAGGGAAATATAGGCCTGGAGATAAGTACGAGGACAACCTCAACTTT 192
Query 181 CTCACCC 187
|||||||
Sbjct 193 CTCACCC 199
Score = 111 bits (60), Expect = 8e-24
Identities = 60/60 (100%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 271 TGCCGCGGCGACTCCTACGACTCCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGG 330
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 205 TGCCGCGGCGACTCCTACGACTCCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGG 264
> AT3G22030.1 | Symbols: | Receptor protein kinase-related | chr3:7759317-7760738
FORWARD LENGTH=762
Length=762
Score = 272 bits (147), Expect = 3e-72
Identities = 595/798 (75%), Gaps = 84/798 (11%)
Strand=Plus/Plus
Query 1 ATGTACTCTTCATATTCTCTATCCAAACGCCTAGTTTCTATCCCTATCTTGGCTATACAA 60
|||| ||||||||||||||||| |||| |||| |||||| ||| ||| ||||||||||||
Sbjct 1 ATGTTCTCTTCATATTCTCTATGCAAATGCCTCGTTTCTTTCCATATATTGGCTATACAA 60
Query 61 CTCCTTCTCATACGC--AGCGTCTCGTCAC-TGAACCTTACCAATGACTATCTTAACCAC 117
| | |||||| || |||||| || | |||| ||||| ||||| ||||| ||||||
Sbjct 61 GT-C--CTCATAAGCTGTGCGTCT--TC-CTTGAATCTTACTAATGAGTATCTGAACCAC 114
Query 118 AAATGCCTCGTCAGTCAAGGGAAATA-TAGGCCTGG-AGATAAGTACGAGGACA-ACCTC 174
||||| | ||| | |||||| ||||| | || || || | ||||||| || | | |||
Sbjct 115 AAATGTCGCGTGA-TCAAGGAAAATACCA-ACCAGGAAG-TGAGTACGA-GAAAGAACTC 170
Query 175 AACTTTCTCA-CC-CA-AG-T-CTTATCCTATAATTTTCCGGATGGTTTCATACACATCT 229
||| ||||| || | || | | || ||| | | ||| | |||||||||| |||| |
Sbjct 171 AACACTCTCAGCCGTAGAGTTGC-TACCCT-TGACTTTACAGATGGTTTCACACACCGGT 228
Query 230 CTTAT-GGCGAAG-CACCCAGTTTCGTCGCCGTCATATTACAGTGCCGCGGCGACTCCTA 287
| || | | || ||| | | | ||| || ||||||| || || ||||| ||||| ||
Sbjct 229 CCAATAGTAG-AGATACCAAATCT-GTCACCATCATATTCCAATGTCGCGGTGACTCTTA 286
Query 288 CGA-CTCCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGGCTTCGTAGGAGATGTC 346
| | ||||||||| |||||||||||| ||||||| | | || || || | ||||
Sbjct 287 C-AGGTCCAAGTGCAACTCCTGCTATGCTACCGCCC--T-C--GC--CG--GG-G-TGTC 334
Query 347 AGAGGAACAAAGGAAGAGTAATATGGTACGATCAATGTTTTCTC--T-TCA-T-TAATTC 401
||| |||||||| || |||||||||| || |||||||||||| | | | | | |||
Sbjct 335 CGAGAAACAAAGGTGGAATAATATGGTATGACCAATGTTTTCTCGATGTTAGTATGATT- 393
Query 402 GATCA-AATCATCCCCGAGGAAGAACG-ATTACAG-GAATGCTTTCTCTATGCACAACCC 458
|| | ||| ||||| | || | | | | ||| | ||| ||| ||||||||||||||
Sbjct 394 AATGACAAT--TCCCC-AAGACGGATGAACTAC-GATAATATTTTTTCTATGCACAACCC 449
Query 459 AAACAACATGATCAAGGACACG-GAA-TTGTTCAACAAGAAA-ACGAAGGATTTCCTCTA 515
||||||| ||| | ||| | | || | |||||||| ||| |||| || ||||||||
Sbjct 450 AAACAACGTGA-GAGGGA-ATGTAAACTCATTCAACAA-AAAGACGACTGAATTCCTCTA 506
Query 516 CGAGCTCATGTTGG--AAGC-CACTACACCCAAC-AGGAC--AAT-GA--TGC--T-TTA 563
| | || | |||| |||| | || || | || |||| || | | | | |||
Sbjct 507 CAAACTGA--TTGGAAAAGCTGA-TAGACTCGACGTGGACGGGATCAACTTTCTATATTA 563
Query 564 CGCAGCAGGGGAGAA-GAAGCTAGGG-A-CAAAGAAATTGTATGCAATGGTGCAGTGTGC 620
||| |||||||| || || ||| ||| | | || | ||||| |||||||||||| |||||
Sbjct 564 CGCGGCAGGGGA-AATGAGGCTTGGGAAGC-AA-ACATTGTTTGCAATGGTGCAATGTGC 620
Query 621 GCAA-GACATATTGCGATGTAAGGGTTGTTTGGAATGGAGTATCAATGAGCTTTCCGAGT 679
| || ||||||||| | ||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 621 G-AAGGACATATTGAGTTGTAAGGATTGTTTGGAATGGAGTATCAAGGAGCTTTCTAAGT 679
Query 680 GCTGCCACAGTAAACAAGGAGCAAGATTTTTGGGAACAGA-GTGTACTCTTAGGTATGAG 738
|||| | ||||||||||||| ||| || | || ||| | |||| |||||||||||||
Sbjct 680 GCTGTGATGGTAAACAAGGAGCGAGAGTTGTAGGTACA-ATTTGTAATCTTAGGTATGAG 738
Query 739 CTATACCCTTTTCTTAGG 756
||||||||||||||||||
Sbjct 739 CTATACCCTTTTCTTAGG 756
> AT3G22053.1 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; BEST Arabidopsis thaliana protein
match is: Receptor protein kinase-related (TAIR:AT3G22030.1);
Has 46 Blast hits to 46 proteins in 2 species: Archae -
0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7767433-7768526
FORWARD LENGTH=677
Length=677
Score = 224 bits (121), Expect = 9e-58
Identities = 226/274 (82%), Gaps = 17/274 (6%)
Strand=Plus/Plus
Query 486 GTTCAACAAGAAA-ACGAAGGATTTCCTCTACGAGCTCATGTTGGAAGC-CACTACACCC 543
||||||||| ||| || | ||||||||||||| | || ||| || |||| | || ||||
Sbjct 381 GTTCAACAA-AAAGACTAGGGATTTCCTCTACAATCTGATGCTGAAAGCTGA-TAAACCC 438
Query 544 AACAGGACAATGATGCTTTACGCAGCAGGGGAGAA-GAAGCTAGGGAC-AAAGAAATTGT 601
|| | | | | | | ||| || || || || || || ||| ||||| ||| || ||||
Sbjct 439 AA-AAGCCGGT-A-G--TTATGCGGCTGGTGA-AATGAGGCTTGGGACGAAA-AACTTGT 491
Query 602 ATGCAATGGTGCAGTGTGCGCAAGACATA-TTGCGATGTAAGGGTTGTTTGGAATGGAGT 660
||||||||||||||||||| | ||||||| ||| |||||| | ||||||||||||||||
Sbjct 492 ATGCAATGGTGCAGTGTGCTCTAGACATATTTG-AATGTAAAGTTTGTTTGGAATGGAGT 550
Query 661 ATCAATGAGCTTTCCGAGTGCTGCCACAGTAAACAAGGAGCAAGATTTTTGGGAACAGAG 720
||||||||||||||| |||||||||| |||||| ||||||||||||||||||| || |||
Sbjct 551 ATCAATGAGCTTTCCAAGTGCTGCCATAGTAAAAAAGGAGCAAGATTTTTGGGTAC-GAG 609
Query 721 -TGTACTCTTAGGTATGAGCTATACCCTTTTCTT 753
|||| | ||||||||||||||||||||||||||
Sbjct 610 CTGTAATATTAGGTATGAGCTATACCCTTTTCTT 643
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37022566339
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5