BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg318936 Length=762 Score E Sequences producing significant alignments: (Bits) Value AT3G22050.1 | Symbols: | Domain of unknown function (DUF26) | ... 464 5e-130 AT3G22057.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 433 1e-120 AT3G22030.1 | Symbols: | Receptor protein kinase-related | chr... 272 3e-72 AT3G22053.1 | Symbols: | FUNCTIONS IN: molecular_function unkn... 224 9e-58 > AT3G22050.1 | Symbols: | Domain of unknown function (DUF26) | chr3:7764131-7765143 FORWARD LENGTH=777 Length=777 Score = 464 bits (251), Expect = 5e-130 Identities = 619/791 (78%), Gaps = 47/791 (6%) Strand=Plus/Plus Query 1 ATGTACTCTTCATATTCTCTATCCAAACGCCT-AGTTTCTATCCCTATCTTGGCTATACA 59 ||||||||||||||||||||||| |||||||| | ||| | |||||||| |||| || || Sbjct 1 ATGTACTCTTCATATTCTCTATCAAAACGCCTCA-TTTATGTCCCTATCCTGGCCATCCA 59 Query 60 ACTCCTTCTCATACGCAGCGTCTCGTCACTGAACCTTACCAATGACTATCTTAACCACAA 119 | |||| ||| |||||||||| || ||||| |||||||||||||| |||||||||||||| Sbjct 60 ATTCCTCCTCGTACGCAGCGTTTCATCACTAAACCTTACCAATGAGTATCTTAACCACAA 119 Query 120 ATGCCTCGTCAGTCAAGGGAAATATAGGCCTGGAGATAAGTACGAGGACAACCTCAACTT 179 |||| |||||||| |||||||||||| || ||| |||||||||||| | ||||||||| | Sbjct 120 ATGCTTCGTCAGTGAAGGGAAATATAAGCATGGTGATAAGTACGAGAATAACCTCAACGT 179 Query 180 TCTC-AC-CCAA-GT-CTTATCCTATAAT-TTTCCGGATGG-TTTCATACACATCTCTTA 233 |||| || || || ||| || ||| || || | | || |||| ||||| | ||| | Sbjct 180 TCTCAACAAGAATGTCCTT-TCTTATGATCTTACTAG-CGGTTTTC-TACACGTTTCTCA 236 Query 234 TGGCGAAGCACCCAG-TTTCGTCGCCGTCATATTACAGTGCCGCGGCGACTCCTACGACT 292 ||||| || || | || |||| || |||||||||| || || |||||||||| || | Sbjct 237 TGGCG-AGGGTCCTGATTCCGTCACCATCATATTACAATGTCGTGGCGACTCCTTCGGGT 295 Query 293 CCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGGCTTCGTAGGAGATGTCAGAGGA 352 | || |||| ||| |||||| |||||||| | |||| ||| ||||||||||||||| | Sbjct 296 CGAATTGCCGCTCTTGCTATACCACCGCCATCGACGGGTTTCATAGGAGATGTCAGAGAA 355 Query 353 ACAAAGGAAGAGTAATATGGTACGATCAATGTTTTC-TCTTCATTAATTCGATCAAA--T 409 ||||||| || | ||||||||||| |||||||||| | || ||| | |||||||| Sbjct 356 ACAAAGGGGGAATTATATGGTACGACCAATGTTTTCTTGTT-ATTTCTACGATCAAACCC 414 Query 410 CATC-CCCGAGGAAGAACGATTACAGGAATGCTTTCTCTATGCACAACCCAAACAACATG 468 || | ||| ||||||| |||| || || ||||||| |||||||||||||||||| || Sbjct 415 CAACTCCCAAGGAAGATTGATTTCAAAAACACTTTCTCAATGCACAACCCAAACAACGTG 474 Query 469 ATCAAG-G-A-CACGGAATTGTTCAACAAGAAAACGAA-GGATTTCCTCTACGAGCTCAT 524 | | || | | || || || ||| |||||| || || ||||||||||||| |||| | Sbjct 475 AGC-AGTGAACCA-GG-ATCGTTTGACAAGATGAC-AAGGGATTTCCTCTACAAGCTGGT 530 Query 525 GTTGGAAGCCACTACACCCAA-C--AG--G-ACA--ATG-ATGC-T-TTACGCAGCAGGG 573 | | ||||| || | |||| | | | ||| | | | | | ||| || || ||| Sbjct 531 GCAGAAAGCCTCT-TATCCAACCGTGGTCGAACACCA-GTCTACATATTATGCTGCGGGG 588 Query 574 GAGAAGAAGCTAGGGACAAA-GAAATTGTATGCAATGGTGCAGTGTGC-GCAAGACATAT 631 ||||| || || |||| ||| ||| ||||||||||| |||||||||| | ||||||| Sbjct 589 GAGAAAAAACTCGGGA-AAAGGAAGCTGTATGCAATGATGCAGTGTGCATC-GGACATAT 646 Query 632 TGCGATGTAAGGGTTGTTTGGAATGGAGTATCA-ATGAGCTTTCCGAGTGCTGCCACAGT 690 ||| |||||||| ||||||||||||| |||||| | |||||| || |||| || | || Sbjct 647 TGCAATGTAAGGTTTGTTTGGAATGGTGTATCAGA-GAGCTTCCCAAGTGTTGTGATGGT 705 Query 691 AAACAAGGAGCAAGATTTTTGGGAACAGAG-TGTACTCTTAGGTATGAGCTATACCCTTT 749 |||||||||| ||| ||||||| | ||| |||| |||||||||||||||||||||||| Sbjct 706 AAACAAGGAGGGAGAATTTTGGGTA-TGAGTTGTAATCTTAGGTATGAGCTATACCCTTT 764 Query 750 TCTTAGGGGTT 760 |||| || ||| Sbjct 765 TCTTCGGCGTT 775 > AT3G22057.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: Domain of unknown function (DUF26) (TAIR:AT3G22050.1); Has 182 Blast hits to 182 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 182; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7769346-7770261 FORWARD LENGTH=525 Length=525 Score = 433 bits (234), Expect = 1e-120 Identities = 253/262 (97%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 408 ATCATCCCCGAGGAAGAACGATTACAGGAATGCTTTCTCTATGCACAACCCAAACAACAT 467 ||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| Sbjct 265 ATCATCCCCAAGGAAGAACGATTAAAGGAATGTTTTCTCTATGCACAACCCAAACAACAT 324 Query 468 GATCAAGGACACGGAATTGTTCAACAAGAAAACGAA-GGATTTCCTCTACGAGCTCATGT 526 |||| |||||||||||||||||||||||||||| || |||||||||||||||||||||| Sbjct 325 GATCGAGGACACGGAATTGTTCAACAAGAAAAC-AAGGGATTTCCTCTACGAGCTCATGC 383 Query 527 TGGAAGCCACTACACCCAACAGGACAATGATGCTTTACGCAGCAGGGGAGAAGAAGCTAG 586 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 384 TGGAAGCCACTACACCCAACAGGACAATGATGCTTTACGCAGCAGGGGAGAAGAAGCTAG 443 Query 587 GGACAAAGAAATTGTATGCAATGGTGCAGTGTGCGCAAGACATATTGCGATGTAAGGGTT 646 ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| Sbjct 444 GGACAAAGAAATTGTATGCAATGGTACAGTGTGCGCAAGACATATTGCGATGAAAGGGTT 503 Query 647 GTTTGGAATGGAGTATCAATGA 668 |||||||||||||||||||||| Sbjct 504 GTTTGGAATGGAGTATCAATGA 525 Score = 324 bits (175), Expect = 9e-88 Identities = 183/187 (98%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 1 ATGTACTCTTCATATTCTCTATCCAAACGCCTAGTTTCTATCCCTATCTTGGCTATACAA 60 |||||||||||||||||| |||||||||| || ||||||||||||||||||||||||||| Sbjct 13 ATGTACTCTTCATATTCTTTATCCAAACGTCTTGTTTCTATCCCTATCTTGGCTATACAA 72 Query 61 CTCCTTCTCATACGCAGCGTCTCGTCACTGAACCTTACCAATGACTATCTTAACCACAAA 120 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 73 CTCCTTCTCATACGCAGTGTCTCGTCACTGAACCTTACCAATGACTATCTTAACCACAAA 132 Query 121 TGCCTCGTCAGTCAAGGGAAATATAGGCCTGGAGATAAGTACGAGGACAACCTCAACTTT 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133 TGCCTCGTCAGTCAAGGGAAATATAGGCCTGGAGATAAGTACGAGGACAACCTCAACTTT 192 Query 181 CTCACCC 187 ||||||| Sbjct 193 CTCACCC 199 Score = 111 bits (60), Expect = 8e-24 Identities = 60/60 (100%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 271 TGCCGCGGCGACTCCTACGACTCCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGG 330 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 205 TGCCGCGGCGACTCCTACGACTCCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGG 264 > AT3G22030.1 | Symbols: | Receptor protein kinase-related | chr3:7759317-7760738 FORWARD LENGTH=762 Length=762 Score = 272 bits (147), Expect = 3e-72 Identities = 595/798 (75%), Gaps = 84/798 (11%) Strand=Plus/Plus Query 1 ATGTACTCTTCATATTCTCTATCCAAACGCCTAGTTTCTATCCCTATCTTGGCTATACAA 60 |||| ||||||||||||||||| |||| |||| |||||| ||| ||| |||||||||||| Sbjct 1 ATGTTCTCTTCATATTCTCTATGCAAATGCCTCGTTTCTTTCCATATATTGGCTATACAA 60 Query 61 CTCCTTCTCATACGC--AGCGTCTCGTCAC-TGAACCTTACCAATGACTATCTTAACCAC 117 | | |||||| || |||||| || | |||| ||||| ||||| ||||| |||||| Sbjct 61 GT-C--CTCATAAGCTGTGCGTCT--TC-CTTGAATCTTACTAATGAGTATCTGAACCAC 114 Query 118 AAATGCCTCGTCAGTCAAGGGAAATA-TAGGCCTGG-AGATAAGTACGAGGACA-ACCTC 174 ||||| | ||| | |||||| ||||| | || || || | ||||||| || | | ||| Sbjct 115 AAATGTCGCGTGA-TCAAGGAAAATACCA-ACCAGGAAG-TGAGTACGA-GAAAGAACTC 170 Query 175 AACTTTCTCA-CC-CA-AG-T-CTTATCCTATAATTTTCCGGATGGTTTCATACACATCT 229 ||| ||||| || | || | | || ||| | | ||| | |||||||||| |||| | Sbjct 171 AACACTCTCAGCCGTAGAGTTGC-TACCCT-TGACTTTACAGATGGTTTCACACACCGGT 228 Query 230 CTTAT-GGCGAAG-CACCCAGTTTCGTCGCCGTCATATTACAGTGCCGCGGCGACTCCTA 287 | || | | || ||| | | | ||| || ||||||| || || ||||| ||||| || Sbjct 229 CCAATAGTAG-AGATACCAAATCT-GTCACCATCATATTCCAATGTCGCGGTGACTCTTA 286 Query 288 CGA-CTCCAAGTGCCTCTCCTGCTATGCCACCGCCCTTTCCGGGCTTCGTAGGAGATGTC 346 | | ||||||||| |||||||||||| ||||||| | | || || || | |||| Sbjct 287 C-AGGTCCAAGTGCAACTCCTGCTATGCTACCGCCC--T-C--GC--CG--GG-G-TGTC 334 Query 347 AGAGGAACAAAGGAAGAGTAATATGGTACGATCAATGTTTTCTC--T-TCA-T-TAATTC 401 ||| |||||||| || |||||||||| || |||||||||||| | | | | | ||| Sbjct 335 CGAGAAACAAAGGTGGAATAATATGGTATGACCAATGTTTTCTCGATGTTAGTATGATT- 393 Query 402 GATCA-AATCATCCCCGAGGAAGAACG-ATTACAG-GAATGCTTTCTCTATGCACAACCC 458 || | ||| ||||| | || | | | | ||| | ||| ||| |||||||||||||| Sbjct 394 AATGACAAT--TCCCC-AAGACGGATGAACTAC-GATAATATTTTTTCTATGCACAACCC 449 Query 459 AAACAACATGATCAAGGACACG-GAA-TTGTTCAACAAGAAA-ACGAAGGATTTCCTCTA 515 ||||||| ||| | ||| | | || | |||||||| ||| |||| || |||||||| Sbjct 450 AAACAACGTGA-GAGGGA-ATGTAAACTCATTCAACAA-AAAGACGACTGAATTCCTCTA 506 Query 516 CGAGCTCATGTTGG--AAGC-CACTACACCCAAC-AGGAC--AAT-GA--TGC--T-TTA 563 | | || | |||| |||| | || || | || |||| || | | | | ||| Sbjct 507 CAAACTGA--TTGGAAAAGCTGA-TAGACTCGACGTGGACGGGATCAACTTTCTATATTA 563 Query 564 CGCAGCAGGGGAGAA-GAAGCTAGGG-A-CAAAGAAATTGTATGCAATGGTGCAGTGTGC 620 ||| |||||||| || || ||| ||| | | || | ||||| |||||||||||| ||||| Sbjct 564 CGCGGCAGGGGA-AATGAGGCTTGGGAAGC-AA-ACATTGTTTGCAATGGTGCAATGTGC 620 Query 621 GCAA-GACATATTGCGATGTAAGGGTTGTTTGGAATGGAGTATCAATGAGCTTTCCGAGT 679 | || ||||||||| | ||||||| ||||||||||||||||||||| |||||||| ||| Sbjct 621 G-AAGGACATATTGAGTTGTAAGGATTGTTTGGAATGGAGTATCAAGGAGCTTTCTAAGT 679 Query 680 GCTGCCACAGTAAACAAGGAGCAAGATTTTTGGGAACAGA-GTGTACTCTTAGGTATGAG 738 |||| | ||||||||||||| ||| || | || ||| | |||| ||||||||||||| Sbjct 680 GCTGTGATGGTAAACAAGGAGCGAGAGTTGTAGGTACA-ATTTGTAATCTTAGGTATGAG 738 Query 739 CTATACCCTTTTCTTAGG 756 |||||||||||||||||| Sbjct 739 CTATACCCTTTTCTTAGG 756 > AT3G22053.1 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: Receptor protein kinase-related (TAIR:AT3G22030.1); Has 46 Blast hits to 46 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:7767433-7768526 FORWARD LENGTH=677 Length=677 Score = 224 bits (121), Expect = 9e-58 Identities = 226/274 (82%), Gaps = 17/274 (6%) Strand=Plus/Plus Query 486 GTTCAACAAGAAA-ACGAAGGATTTCCTCTACGAGCTCATGTTGGAAGC-CACTACACCC 543 ||||||||| ||| || | ||||||||||||| | || ||| || |||| | || |||| Sbjct 381 GTTCAACAA-AAAGACTAGGGATTTCCTCTACAATCTGATGCTGAAAGCTGA-TAAACCC 438 Query 544 AACAGGACAATGATGCTTTACGCAGCAGGGGAGAA-GAAGCTAGGGAC-AAAGAAATTGT 601 || | | | | | | ||| || || || || || || ||| ||||| ||| || |||| Sbjct 439 AA-AAGCCGGT-A-G--TTATGCGGCTGGTGA-AATGAGGCTTGGGACGAAA-AACTTGT 491 Query 602 ATGCAATGGTGCAGTGTGCGCAAGACATA-TTGCGATGTAAGGGTTGTTTGGAATGGAGT 660 ||||||||||||||||||| | ||||||| ||| |||||| | |||||||||||||||| Sbjct 492 ATGCAATGGTGCAGTGTGCTCTAGACATATTTG-AATGTAAAGTTTGTTTGGAATGGAGT 550 Query 661 ATCAATGAGCTTTCCGAGTGCTGCCACAGTAAACAAGGAGCAAGATTTTTGGGAACAGAG 720 ||||||||||||||| |||||||||| |||||| ||||||||||||||||||| || ||| Sbjct 551 ATCAATGAGCTTTCCAAGTGCTGCCATAGTAAAAAAGGAGCAAGATTTTTGGGTAC-GAG 609 Query 721 -TGTACTCTTAGGTATGAGCTATACCCTTTTCTT 753 |||| | |||||||||||||||||||||||||| Sbjct 610 CTGTAATATTAGGTATGAGCTATACCCTTTTCTT 643 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37022566339 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5