BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318939
Length=726
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22080.1 | Symbols: | TRAF-like family protein | chr3:77778... 582 1e-165
> AT3G22080.1 | Symbols: | TRAF-like family protein | chr3:7777818-7781718
REVERSE LENGTH=1947
Length=1947
Score = 582 bits (315), Expect = 1e-165
Identities = 450/511 (88%), Gaps = 26/511 (5%)
Strand=Plus/Plus
Query 219 GGGAGATCAATGTGAATTTGGTGTTGATG-TCTTGGTTGCTCCATCCCTTACTAAATGGG 277
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 471 GGGAGATCAATGTGAATTTGGTGTTGATGTTC-TGGTTGCTCCATCCCTTACTAAATGGG 529
Query 278 AAGTCGTGTCCTTTAATCAGAAAATCTCTA-ATCCCAAGTTCTCGTGGACTCTCAAGAAA 336
|||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||
Sbjct 530 AAGTCGTGTCCTTTAATCAGAAAATC-CTTGATCCCAAGTTCTCGTGGTCTCTCAAGAAA 588
Query 337 TTTAAAGAGTTAAAAGAGGAATTTTACGACTCAGTA-AAGTTTTTAGTAGGAGGAAGGCA 395
|||||||||||||||||||| || ||| |||||| | |||||||||||||||||||||||
Sbjct 589 TTTAAAGAGTTAAAAGAGGAGTTATACAACTCAG-ACAAGTTTTTAGTAGGAGGAAGGCA 647
Query 396 ATGGTTTCTAAAGGTGTATCCTAAGGGTGATATTAGAGCACGAGACAAGTCGTTATCCAT 455
|||||||||||||||| |||||||||||| || | |||||||||||| |||||||||||
Sbjct 648 ATGGTTTCTAAAGGTGCATCCTAAGGGTGTTA--A-AGCACGAGACAACTCGTTATCCAT 704
Query 456 TTATTTGT-TCTTAAGT-AAGAGTGAAACACTCAACGCAGAGGAGAAAATCTACACGCGA 513
|||| ||| | |||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 705 TTATGTGTAT-TTAAGTGAA-AGTGAAACACTCAATGCAGAGGAGAAAATCTACACGCGA 762
Query 514 GTACATGTTAGACTTTTAGATCC-TCTTGGATCCACTCATCACGTCGCTTGGACATTG-A 571
|||||| ||||| |||||||||| | ||||||||| ||| || | || || || || |
Sbjct 763 GTACATCTTAGAGTTTTAGATCCGT-TTGGATCCATTCACCAAGCCG---GG-CAATGCA 817
Query 572 CCTACTGGTACACAAAG-CAAA-ACA--C-A-GGCTATGGCTGGGATAAATTTGCGTCTT 625
|| |||| |||||| |||| | | | | |||||||| ||| || ||||||||||
Sbjct 818 ACTTCTGGCGCACAAATACAAATAAAAACCAAGGCTATGGTTGGCCTACTTTTGCGTCTT 877
Query 626 TAGATAAACTCCGGGCGCAGTACTTGGACAATGAGGGTTCTTTGAATATAGAGATTGAAT 685
|||||||| | || | | |||||||||||||||||||||||||||| |||||||||||||
Sbjct 878 TAGATAAAGTGCGAGAGAAGTACTTGGACAATGAGGGTTCTTTGAACATAGAGATTGAAT 937
Query 686 TTGCAGTTGTTTCAAGCACCAAATACTCTCC 716
||||||||||||| |||||||||||||||||
Sbjct 938 TTGCAGTTGTTTCTAGCACCAAATACTCTCC 968
Score = 158 bits (85), Expect = 9e-38
Identities = 103/112 (92%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 1 ATGTATGTGGAGATTGATAGCACAAACCTCTTGTCAACGCCACTAACTGATGTGGTTGCA 60
|||||||||||||||||||||||||||||||||||| | |||||||||| ||| ||||
Sbjct 202 ATGTATGTGGAGATTGATAGCACAAACCTCTTGTCATCACCACTAACTGGCGTGTTTGCG 261
Query 61 TGTCTCATATTCTTTGTTTACAACAAGAAAACAGACAAATACTTTACTATTA 112
| |||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 262 TATCTCGTATTCTTTGTCTACAACAAGAAAACAGACAAATACTTTACTATTA 313
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35214137047
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5