BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318974
Length=627
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Domain of... 970 0.0
> AT3G22430.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Domain
of unknown function XS (InterPro:IPR005380); BEST Arabidopsis
thaliana protein match is: XS domain-containing protein /
XS zinc finger domain-containing protein-related (TAIR:AT5G23570.1);
Has 565 Blast hits to 510 proteins in 121 species:
Archae - 2; Bacteria - 90; Metazoa - 191; Fungi - 32; Plants
- 51; Viruses - 4; Other Eukaryotes - 195 (source: NCBI BLink).
| chr3:7953260-7957884 FORWARD LENGTH=2007
Length=2007
Score = 970 bits (525), Expect = 0.0
Identities = 593/627 (95%), Gaps = 0/627 (0%)
Strand=Plus/Plus
Query 1 ATGCACACATACTGTTCTGGTGATGCTAGTTCACGTGTGCGTCACTTAGGCCTACACAAA 60
||||||||||||||||||| |||| |||| ||||| |||| ||| |||||||||||||||
Sbjct 1102 ATGCACACATACTGTTCTGATGATTCTAGCTCACGCGTGCATCATTTAGGCCTACACAAA 1161
Query 61 GCTCTCTGTGTATTGATGGGATGGAATTTCTCAAAGGCTCCTGATAATTCAAAGGCATAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1162 GCTCTCTGTGTATTGATGGGATGGAATTTCTCAAAGGCTCCTGATAATTCAAAGGCATAC 1221
Query 121 CAGAATCTACCTGCTGAAGAGGCAGCAATCAATCAAGCCCAGCTGATTATTTGGCCACCT 180
||||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1222 CAGAATCTACCTGCTGATGAGGCAGCAATCAACCAAGCCCAGCTAATTATTTGGCCACCT 1281
Query 181 CATGTTATTGTTCATAACACCAGTACAGGGAAGGGTAAAGAAGGGCGCATGGAAGGCTTT 240
|||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1282 CATGTTATTGTTCAGAATACCAGTACAGGGAAGGGAAAAGAAGGGCGCATGGAAGGCTTT 1341
Query 241 GGAAACAAAACAATGGATAACAGAATTAGAGAACTAGGACTCACTGGTGGGAAATCAAAG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1342 GGAAACAAAACAATGGATAACAGAATTAGAGAACTAGGACTCACTGGTGGGAAATCGAAG 1401
Query 301 TCACTGTATGGAAGAGAGGGTCATTTGGGAATTACATTGTTCAAGTTTGCGGGAGACGAT 360
|| ||||||||||||||||||||||||||||||| ||||||||||||| |||||||||
Sbjct 1402 TCGTTGTATGGAAGAGAGGGTCATTTGGGAATTACCCTGTTCAAGTTTGCTGGAGACGAT 1461
Query 361 TCAGGGCTCAGGGACGCTATGAGAATGGCAGAATATTTTGAGAAGATAAACCGTGGGCGT 420
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1462 TCAGGGCTCAGGGATGCTATGAGAATGGCAGAATATTTTGAGAAGATAAACCGTGGGCGT 1521
Query 421 AAGAGTTGGGGTAGGGTACAAACACTCACTCCAAGCAAAGATGATGAGCAAAACCCTAGT 480
||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 1522 AAGAGTTGGGGGAGGGTACAGCCACTCACTCCAAGCAAAGATGATGAGAAAAACCCTGGT 1581
Query 481 CTTGTCGAGGTTGATGGGAGGACAGGTGAGAAAAAGAGGATCTTTTATGGCTATCTTGCT 540
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||
Sbjct 1582 CTTGTCGAGGTTGATGGGAGGACGGGAGAGAAAAAGAGGATCTTTTATGGTTATCTCGCG 1641
Query 541 ACTGTAACAGACTTGGACAAAGTCGATATGGAGACAAAGAAGAAGACCACAATAGAGAGC 600
|||||||| |||||||||||||||||| |||||||||||||||| |||||||| ||||||
Sbjct 1642 ACTGTAACGGACTTGGACAAAGTCGATGTGGAGACAAAGAAGAAAACCACAATCGAGAGC 1701
Query 601 CTTAGAGAACTCACAGGAACAAAGTAA 627
||||||||||||||| |||||||||||
Sbjct 1702 CTTAGAGAACTCACAAGAACAAAGTAA 1728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30240956494
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5