BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318984
Length=804
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22550.1 | Symbols: | Protein of unknown function (DUF581) ... 1308 0.0
> AT3G22550.1 | Symbols: | Protein of unknown function (DUF581)
| chr3:7991646-7993454 REVERSE LENGTH=1483
Length=1483
Score = 1308 bits (708), Expect = 0.0
Identities = 773/805 (96%), Gaps = 2/805 (0%)
Strand=Plus/Plus
Query 1 ATGCTAAAGAAGAGATCAAGAAGCAAGCAAGCTTTAATGGCGGAAACGAACCAGAGTCAG 60
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 499 ATGCTAAAGAAGAGATCAAGAAGCAAGCAAGCTTTAATGGCGGAAACAAACCAGAGTCAG 558
Query 61 ACTCAGAAACAGAGTAAACCGACGCCGTTTCCAAGGCTCTTCACAGCTTTTAGTAGCTTT 120
| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 559 AATCAGAAACAGAGTAAAACGACGCCGTTTCCGAGGCTCTTCACAGCTTTTAGTAGCTTT 618
Query 121 AAAAGCTTCACTGAAAACGACGCCGTCGCGAGTCCAACTTCGATTCTCGACACCAAACCT 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 619 AAAAGCTTCACTGAAAACGACGCCGTCGCGAGTCCAACTTCAATTCTCGACACCAAACCT 678
Query 181 TTCTCTATTTTGAAAAACCCTTTTGGATCCGATAACCCGAAAACCCACGAACCCGAAACC 240
|||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 679 TTCTCTGTTTTGAAAAACCCATTTGGATCCGATAACCCGAAAACCCAAGAACCCGAAACC 738
Query 241 CGTCTCAGACTCGAACCCAAAAGAATCGGACTCGCCATTGTCGATTCTTTAATCCAAGAC 300
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 739 CGTCTCAAACTCGAACCCAAAAGAATCGGACTCGCCATTGTCGATTCTCTAATCCAAGAC 798
Query 301 GAAACACCCGAACCCGGACCGAGATCCGGGACGATTCTATTCGGGTCACAACTTCGGATC 360
|||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||
Sbjct 799 GAAACACCCGAACCCGGACCGAGATCCGGGACAATTCTATTCGGGTCTCAGCTTCGGATC 858
Query 361 CGGGTCCCGGATTCTCC-ACGTTCATCGTCGGATTTCGGGATCAAAACGAGGAATTCTCA 419
||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||
Sbjct 859 CGGGTCCCGGATTCTCCGA-TTTCCTCGTCGGATTTCGGGATCAAAACGAGGAATTCTCA 917
Query 420 ACCGGAGACGAAGAAGCCGGATCCCGGGTCGGGTCTTGGGTCGCCCCGAATCATCTCTGG 479
||||||||||||||| |||| | ||| ||||||||||||||| ||| |||||||||| ||
Sbjct 918 ACCGGAGACGAAGAAACCGGGTTCCGAGTCGGGTCTTGGGTCTCCCAGAATCATCTCCGG 977
Query 480 CTATTTCTCGGTGAGCGATATGGAGCTATCGGAGGATTACACATGCGTGACGTGTCACGG 539
||||||| ||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 978 CTATTTCCCGGCGAGCGATATGGAGTTATCGGAGGATTACACATGCGTGACGTGTCACGG 1037
Query 540 GCCTAACCCGAGAACCATTCATATATTCGATAACTGTATCGTAGAGAGCCAACCCGGCGT 599
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1038 GCCTAACCCGAGAACCATTCATATATTCGATAACTGTATCGTTGAGAGCCAACCCGGCGT 1097
Query 600 CGTTTTCTTCCGGAGCTCCGACCCGGTTAACGAATCGGATTCGGATTATTCCCCACCCGA 659
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1098 CGTTTTCTTCCGGAGCTCCGACCCGGTTAATGAATCGGATTCGGATTATTCCCCACCCGA 1157
Query 660 CAGTTTTCTCAGTTCTTGCTGTAACTGTAAGAAGAGTCTTGGACCTCGTGATGACATTTT 719
|||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1158 CAGTTTTCTCAGTTGTTGCTGTAACTGTAAGAAGAGTCTTGGGCCTCGTGATGACATTTT 1217
Query 720 CATGTACAGGGGAGATAGAGCTTTCTGTAGCAGTGAATGCAGGTCCATAGAGATGATGAT 779
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1218 CATGTACAGGGGAGATAGAGCTTTCTGTAGCAGTGAATGCAGGTCCATAGAGATGATGAT 1277
Query 780 GTCAGAGGAAAATGATATTAAATGA 804
||||||||||||||||| |||||||
Sbjct 1278 GTCAGAGGAAAATGATACTAAATGA 1302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39132400513
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5