BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg318995
Length=1152
Score E
Sequences producing significant alignments: (Bits) Value
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 649 0.0
AT3G22700.1 | Symbols: | F-box and associated interaction doma... 268 6e-71
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 161 1e-38
AT3G25460.1 | Symbols: | F-box and associated interaction doma... 102 7e-21
AT2G04920.1 | Symbols: | F-box and associated interaction doma... 78.7 1e-13
AT3G21120.1 | Symbols: | F-box and associated interaction doma... 65.8 9e-10
AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 56.5 5e-07
AT3G24580.1 | Symbols: | F-box and associated interaction doma... 56.5 5e-07
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 649 bits (351), Expect = 0.0
Identities = 611/732 (83%), Gaps = 35/732 (5%)
Strand=Plus/Plus
Query 1 ATGATGTCTTATCTTCCACCGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCGGCGACA 60
|||||||| ||||| | ||||||||||||||||||||||||||||||||| || |||
Sbjct 4 ATGATGTCCGATCTTTCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCACA 63
Query 61 TCTTTGATACGATTACGATCTACTTGCAAACTATGGAACACTTTATTTAAACACCCAAAA 120
||| | | ||||||||||||||||||||||||||||||| ||||||||||| |||| |
Sbjct 64 TCTCTCAAACGATTACGATCTACTTGCAAACTATGGAACGCTTTATTTAAAAACCCGGGA 123
Query 121 TTCGCCGAA-AAGCAATTTCGTAAAGCACCAAAGGAGTCTTTTGTTCTCATGTTGAAGGA 179
|| || || |||||||||| |||||||||||||||||| | |||||||||||||||||
Sbjct 124 TTTACC-AAGAAGCAATTTCTTAAAGCACCAAAGGAGTCACTGGTTCTCATGTTGAAGGA 182
Query 180 GTATAGGGTTTGTCCAATGAACGTCAATCTCAACGTTTCTCCTCCA-CATATAGAGTTTA 238
|||||| ||||||||||||| || |||||||| ||||||| |||| | |||||||||||
Sbjct 183 GTATAGCGTTTGTCCAATGATCGCCAATCTCAGCGTTTCTGCTCCGTC-TATAGAGTTTA 241
Query 239 AGGGTGCACTTGCCCTAA-GTAATTATCCTTCTAATTCAGAAGAGGTCTATATACATGAA 297
| ||||||||| ||||| | ||||||||| || |||||||||| ||| |||||||||||
Sbjct 242 AAGGTGCACTTAACCTAAAG-AATTATCCTCCTTATTCAGAAGAAGTCGATATACATGAA 300
Query 298 GTTTTTCACTGCGACGGTTTATTGCTATGCAGAACCATGGACTACAGACTCGTGGTTTGG 357
| || |||||| || |||||||||||||| | ||| |||||||| ||| | |||||||||
Sbjct 301 GCTTGTCACTGTGATGGTTTATTGCTATGTACAACTATGGACTATAGAATAGTGGTTTGG 360
Query 358 AACCCGTGTTTGGGAGAAACAAGGTGGATCCAAA--CCGaaaaaaaGT-ACTCTAGGCTT 414
|||||||||||||| |||||||||||||||| | || ||||| | | |||||||| ||
Sbjct 361 AACCCGTGTTTGGGGGAAACAAGGTGGATCCGATGGCCCAAAAACATTTACTCTAGGTTT 420
Query 415 GCTCTAGGATACGAGAAAAACAAATCTTACCATATCTACAAAATCTTGAAGTGTAGGGA- 473
||||||||||||||||||||||||| | || ||||||||||||||||| |||| ||||
Sbjct 421 GCTCTAGGATACGAGAAAAACAAATATGGCCGTATCTACAAAATCTTGAGGTGTTGGGAT 480
Query 474 CA--ATA-T--ACCATAC-GGTCAAGTTGATGAGTTTGAAATATATGATTTTAGCTCTGA 527
| | | | |||| || || | |||||||||||||||||| ||||| |||||||||||
Sbjct 481 CGTCACAATTCACCA-ACTGGCCGAGTTGATGAGTTTGAAATCTATGAGTTTAGCTCTGA 539
Query 528 TTCATGGAGAGTTCTTGATGTTGTCGCT-TTGGATTGCTTCATA-CTATCA-AGTATTGG 584
||||||||| ||||||||| | |||||| ||| ||||| |||| | |||| | ||||||
Sbjct 540 TTCATGGAGGGTTCTTGATCTCGTCGCTCTTG-ATTGCCACATAGC-ATCACA-TATTGG 596
Query 585 CGTTTCTTTGAAGGGAAATACTTACTGGCGTGCTT-TGGATAAAGTAA-ACTACTATC-A 641
||||||||| |||||||||||||| |||| ||| | || ||||| || || | ||| |
Sbjct 597 CGTTTCTTTCAAGGGAAATACTTATTGGCTTGCGTCTG-ATAAAA-AAGACAAATATGGA 654
Query 642 GTTCTTAGTCAATT--TT-GATTTTACAGCAGAGAGATTTACACGTTTGTGTCTTCCGCC 698
| ||| | | || || ||||||||| |||| |||||||| ||| |||||||||| ||
Sbjct 655 CT-CTT-G-CT-TTGCTTCGATTTTACAACAGAAAGATTTACGCGTCTGTGTCTTCCACC 710
Query 699 ATTTCAGAATGT 710
|| |||| ||||
Sbjct 711 ATCTCAGGATGT 722
> AT3G22700.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8024798-8025814 REVERSE LENGTH=1017
Length=1017
Score = 268 bits (145), Expect = 6e-71
Identities = 315/393 (80%), Gaps = 27/393 (7%)
Strand=Plus/Plus
Query 4 ATGTCTTATCTTCCACCGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCGGCGACATCT 63
||||| ||||||| ||||||||||||||||||||||||||||||||| || ||||||
Sbjct 1 ATGTCGAATCTTCCTTTGGATTTGGTAGAGGAAATACTCTCTAGGGTTCCAGCCACATCT 60
Query 64 TTGATACGATTACGATCTACTTGCAAACTATGGAACACTTTATTTAAACACCCAAAATTC 123
| | |||||||||||| ||||| | || ||||||| ||||||| ||| ||| || ||||
Sbjct 61 CTCAAACGATTACGATCGACTTGTAGACAATGGAACGCTTTATTGAAAGACCGAAGATTC 120
Query 124 GCCGAAAAGCAATTTCGTAAAGCACCAAAGGAGTCTTTTGTTCTCATGTTGAAGGAGTAT 183
| || ||||| |||||||||||||||||||||||| | |||||||||||||| || |
Sbjct 121 ACAGAGAAGCACTTTCGTAAAGCACCAAAGGAGTCTCTAGTTCTCATGTTGAAAGA--A- 177
Query 184 AGGGTTTGTCCAATGAACGTCAATCTCAACGTTTCTCCTCCA-CATATAGAGTTTAAGGG 242
| | || | |||||||||||||||| |||||||| | |||||||||||| |
Sbjct 178 A---T------AA-G--CGTCAATCTCAACGTTACTCCTCCATC-TATAGAGTTTAAAGA 224
Query 243 TGCACTTGCCCTAA-GTAATTATCC-TTCTAATTCAGAAGAGGTCT-ATATACATG-AAG 298
|||||||| | ||| | | || || ||||||||||||| | || | ||||| | |||
Sbjct 225 TGCACTTGGCTTAAAGGA-TTC-CCATTCTAATTCAGAACAAGT-TGATATAG-TCCAAG 280
Query 299 TTTTTCACTGCGACGGTTTATTGCTATGCAGAACCATGGACTACAGACTCGTGGTTTGGA 358
|| |||||||||| ||||| ||| |||||| |||| |||| | |||| |||||||||||
Sbjct 281 TTCTTCACTGCGATGGTTTGTTGTTATGCACCACCAAGGACAATAGACACGTGGTTTGGA 340
Query 359 ACCCGTGTTTGGGAGAAACA-AGGTGGATCCAA 390
| ||||||||||| ||||| | |||||||||
Sbjct 341 ATCCGTGTTTGGGGGAAACCCAT-TGGATCCAA 372
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 161 bits (87), Expect = 1e-38
Identities = 183/227 (81%), Gaps = 16/227 (7%)
Strand=Plus/Plus
Query 757 ATGGCTCTATCAGTTGTTGGAGAAAAACAACTCTCAGTGCTAAGTCAGAGCGA-T-AGTA 814
|||||||||||||||||||||||| |||||||||||||| | | || || || | || |
Sbjct 733 ATGGCTCTATCAGTTGTTGGAGAAGAACAACTCTCAGTG-TTA--CA-AGAGATTGAG-A 787
Query 815 CATCAAAGATTGATATA-TGGATAACCAATGAAA-TTGATAATGATATTAAAGGTGTTTT 872
|||||||||| || ||| | | |||||||| ||| ||| || ||| | ||| || |||
Sbjct 788 CATCAAAGATGGAGATATTTG-TAACCAAT-AAAGTTGGTACTGA-A--GAAGCTGCTTT 842
Query 873 GCAGTGGAGCAAATCCTTTACAGTTGATATACCC-TTCGGCGGTTATAATTATTTGTTTT 931
| ||||||||||||||||| ||| ||| ||||| || |||||| || || | | |||
Sbjct 843 GTTGTGGAGCAAATCCTTTATAGTGGATTTACCCATT-GGCGGTCATTGTTCTGAGGTTT 901
Query 932 TCTTGAGTTTTTTAAACGACGAGGAGAAGAAAGTGGCCTTGTGTTGT 978
|| |||| |||||| | |||||||||||||||||||||||||||||
Sbjct 902 TCGCGAGTCTTTTAATCAACGAGGAGAAGAAAGTGGCCTTGTGTTGT 948
> AT3G25460.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:9231581-9232666 REVERSE LENGTH=1086
Length=1086
Score = 102 bits (55), Expect = 7e-21
Identities = 83/96 (86%), Gaps = 4/96 (4%)
Strand=Plus/Plus
Query 13 CTTCCACCGGATTTGGTAGAGGAAATACTCT-CTAGGGTTCCGGCGACATCTTTGATACG 71
|||||| ||||||| ||| ||| ||||||| | | |||||||| |||||||||| |||
Sbjct 16 CTTCCAGAGGATTTGTTAGTGGAGATACTCTGC-CGCGTTCCGGCTACATCTTTGAAACG 74
Query 72 ATTACGATCTACTTGCAAACTATGGAAC-ACTTTAT 106
|||||||||||||||||||||||||||| | |||||
Sbjct 75 ATTACGATCTACTTGCAAACTATGGAACCA-TTTAT 109
> AT2G04920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:1726138-1727268 FORWARD LENGTH=1131
Length=1131
Score = 78.7 bits (42), Expect = 1e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand=Plus/Plus
Query 1086 TCCAT-TTATTTTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTAGATGCAAAA 1144
||||| || || ||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1044 TCCATATT-TTGTCAGTTATGTTCCAAGTTTGGTTCAAATCCAGCAATGTAAAAGCAAA- 1101
Query 1145 GAGAATAA 1152
|| |||||
Sbjct 1102 GAAAATAA 1109
> AT3G21120.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7406326-7407429 FORWARD LENGTH=1104
Length=1104
Score = 65.8 bits (35), Expect = 9e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 1101 TTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTA 1135
|||||||||||||||||||||||||||||||||||
Sbjct 1065 TTATGTTCCAAGTTTGGTTCAAATCCAGCAAGGTA 1099
> AT4G04375.1 | Symbols: | pseudogene, hypothetical protein |
chr4:2136444-2137565 FORWARD LENGTH=1122
Length=1122
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1096 TTCAGTTATGTTCCAAGTTTGGTTCAAATCCAG 1128
|||| ||||||||||||||||||||||||||||
Sbjct 1079 TTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 1111
> AT3G24580.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8969162-8970298 FORWARD LENGTH=1137
Length=1137
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 296 AAGTTTTTCACTGCGACGGTTTATTGCTATGCA 328
|||| ||||||||||||||||||||||||||||
Sbjct 308 AAGTCTTTCACTGCGACGGTTTATTGCTATGCA 340
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56525813670
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5