BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319024
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23050.1 | Symbols: IAA7, AXR2 | indole-3-acetic acid 7 | ch... 1122 0.0
AT4G14550.1 | Symbols: IAA14, SLR | indole-3-acetic acid induci... 641 0.0
> AT3G23050.1 | Symbols: IAA7, AXR2 | indole-3-acetic acid 7 |
chr3:8194679-8197153 FORWARD LENGTH=1258
Length=1258
Score = 1122 bits (607), Expect = 0.0
Identities = 691/732 (94%), Gaps = 3/732 (0%)
Strand=Plus/Plus
Query 1 ATGATCGGACAACTTATGAACCTCAAGGCGACGGAGCTCTGTCTTGGTCTCCCCGGCGGC 60
|||||||| |||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 90 ATGATCGGCCAACTTATGAACCTCAAGGCCACGGAGCTCTGTCTCGGCCTCCCCGGCGGC 149
Query 61 GCTGAAGCCGTTGAGAGCCCTGCCAAATCGGCGGTGGGAAGCAAGAGAGGCTTCTCCGAG 120
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 150 GCTGAAGCAGTTGAGAGTCCTGCCAAATCGGCGGTGGGAAGCAAGAGAGGCTTCTCCGAA 209
Query 121 ACCGTTGATCTTATGCTCAATCTTCAATCTAACAAAGAAGGCTCCGTCGATCTCAACAAC 180
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 210 ACCGTTGATCTCATGCTCAATCTTCAATCTAACAAAGAAGGCTCCGTTGATCTCAAAAAC 269
Query 181 GTCGCTGCAGCTCCTAAGGAGAAGACTACCCTCAAAGATCCTTCTAAGCCTCCTGCTAAA 240
|| |||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 270 GTTTCTGCTGTTCCCAAGGAGAAGACTACCCTTAAAGATCCTTCTAAGCCTCCTGCTAAA 329
Query 241 GCACAAGTGGTGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATGATGACTCAGCAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 330 GCACAAGTGGTGGGATGGCCACCTGTGAGGAACTACAGGAAGAACATGATGACTCAGCAG 389
Query 301 AAGACCAGT-G-GC-GAGGAAGAGGCCAGCAGCGAGAAGGCCGGGAGCGGCGGTGGAGGA 357
||||||||| | | | ||| ||||||||||| ||||||||||||| | |||||||||
Sbjct 390 AAGACCAGTAGTGGTGCGGAGGAGGCCAGCAGTGAGAAGGCCGGGAACTTTGGTGGAGGA 449
Query 358 GCGGTCGGAGCCGGCTTGGTGAAGGTGTCCATGGACGGTGCTCCCTATCTGAGGAAAGTT 417
|| | ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 450 GCAGCCGGAGCCGGCTTGGTGAAGGTCTCCATGGACGGTGCTCCATATCTGAGGAAAGTT 509
Query 418 GACCTCAAGATGTACAAAAGCTACCAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGC 477
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 510 GACCTCAAGATGTACAAAAGCTACCAGGATCTTTCTGATGCATTGGCCAAAATGTTCAGC 569
Query 478 TCCTTTACTATGGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAAG 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 570 TCCTTTACTATGGGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAAG 629
Query 538 CTTATGAATCTCCTGAATAGTTCTGAGTATGTCCCAAGCTACGAGGACAAAGATGGTGAT 597
|| |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 630 CTAATGAATCTGCTGAATAGCTCTGAGTATGTGCCAAGCTACGAGGACAAAGATGGTGAC 689
Query 598 TGGATGCTCGTCGGCGATGTCCCATGGGAAATGTTTGTCGAGTCCTGCAAACGTTTGCGC 657
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 690 TGGATGCTCGTTGGCGATGTCCCATGGGAAATGTTTGTCGAGTCTTGCAAACGTTTGCGC 749
Query 658 ATTATGAAGGGATCTGAAGCAATTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAG 717
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 750 ATTATGAAGGGATCTGAAGCAGTTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAG 809
Query 718 AACAGATCTTGA 729
||||||||||||
Sbjct 810 AACAGATCTTGA 821
> AT4G14550.1 | Symbols: IAA14, SLR | indole-3-acetic acid inducible
14 | chr4:8347822-8350019 REVERSE LENGTH=1482
Length=1482
Score = 641 bits (347), Expect = 0.0
Identities = 603/721 (84%), Gaps = 39/721 (5%)
Strand=Plus/Plus
Query 15 TATGAACCTCAAGGCGACGGAGCTCTGTCTTGGTCTCCCCGGCGGCGCTGAAGCCGTTGA 74
||||||||| |||| ||||||||| |||||||| |||||||| ||| ||||| |||||||
Sbjct 96 TATGAACCTTAAGGAGACGGAGCTTTGTCTTGGCCTCCCCGGAGGCACTGAAACCGTTGA 155
Query 75 GAGCCCTGCCAAATC-GGCGGTGGGAAGCAAGAGAGGCTTCTCCGAGACCGTTGATCTTA 133
|| || ||||| || || | |||||| |||||||||||||||||||||||||||||| |
Sbjct 156 AAGTCCGGCCAAGTCGGGTGTTGGGAA-CAAGAGAGGCTTCTCCGAGACCGTTGATCTCA 214
Query 134 TGCTCAATCTTCAATCTAACAAAGAAGGCTC-CGTCGATCTCAACAACGTCGCTGCAGCT 192
|| |||||||||||||||||| |||| | || ||||||||| || | || ||||
Sbjct 215 AACTTAATCTTCAATCTAACAAACAAGG-ACATGTGGATCTCAAC-AC-T-AATGGAGCT 270
Query 193 CCTAAGGAGAAGA-CTACCCTCAAAGATCCTTCTAAGCCTCCTGCTAAAGCACAAGTGGT 251
|| |||||||||| || ||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 271 CCCAAGGAGAAGACCT-TCCTTAAAGACCCTTCTAAGCCTCCTGCTAAAGCACAAGTGGT 329
Query 252 GGGATGGCCACCTGTGAGGAACTACAGGAAGAACATG--ATGACTCAGCAGAAGACCAGT 309
||| |||||||| |||||||||||| |||| || ||| ||| || | |||||| ||
Sbjct 330 GGGTTGGCCACCGGTGAGGAACTACCGGAA-AA-ATGTTATGGCTAATCAGAAG---AGC 384
Query 310 GGCGAGGAAGAGGCCAGCAGCGAGAAGGCCGGGAGCGGCGGTGGAGGAGCGGTCGGAGCC 369
||| | | | | ||| | | | |||| ||| | ||||||||| | ||| | |
Sbjct 385 GGC---G-A-A-G-CAG-A--G-G-AGGCAATGAGTAGTGGTGGAGGAACCGTC---G-C 428
Query 370 GGCTTGGTGAAGGTGTCCATGGACGGTGCTCCCTATCTGAGGAAAGTTGACCTCAAGATG 429
||| |||||||| |||||||| || ||||| ||||| |||| |||||||||||||||
Sbjct 429 --CTTTGTGAAGGTTTCCATGGATGGAGCTCCTTATCTTCGGAAGGTTGACCTCAAGATG 486
Query 430 TACAAAAGCTACCAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACTATG 489
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 487 TACACCAGCTACAAGGATCTCTCTGATGCCTTGGCCAAAATGTTCAGCTCCTTTACCATG 546
Query 490 GGAAACTATGGAGCACAAGGAATGATAGATTTCATGAACGAGAGCAA-GCTTATGAATCT 548
|| | |||||||||||||| ||||||||||||||||||||||| || | | ||| ||||
Sbjct 547 GGGAGTTATGGAGCACAAGGGATGATAGATTTCATGAACGAGAGTAAAG-TGATGGATCT 605
Query 549 CCTGAATAGTTCTGAGTATGTCCCAAGCTACGAGGACAAAGATGGTGATTGGATGCTCGT 608
|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 606 GTTGAACAGTTCTGAGTATGTTCCAAGCTACGAGGACAAAGATGGTGACTGGATGCTCGT 665
Query 609 CGGCGATGTCCCATGGGAAATGTTTGTCGAGTCCTGCAAACGTTTGCGCATTATGAAGGG 668
|| |||||||| ||| |||||||||||||| ||||||||||||||||| ||||| ||
Sbjct 666 TGGTGATGTCCCCTGGCCGATGTTTGTCGAGTCATGCAAACGTTTGCGCATAATGAAAGG 725
Query 669 ATCTGAAGCAATTGGACTTGCTCCGAGAGCAATGGAGAAGTACTGCAAGAACAGATCTTG 728
||| |||||||||||||||||||| |||||||||||||||| | |||||||||||| ||
Sbjct 726 ATCCGAAGCAATTGGACTTGCTCCAAGAGCAATGGAGAAGT--T-CAAGAACAGATCATG 782
Query 729 A 729
|
Sbjct 783 A 783
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5