BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319027
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23080.1 | Symbols: | Polyketide cyclase/dehydrase and lipi... 1657 0.0
> AT3G23080.1 | Symbols: | Polyketide cyclase/dehydrase and lipid
transport superfamily protein | chr3:8207387-8209270 REVERSE
LENGTH=1574
Length=1574
Score = 1657 bits (897), Expect = 0.0
Identities = 1173/1298 (90%), Gaps = 52/1298 (4%)
Strand=Plus/Plus
Query 1 ATGGATATGTTCATGGATTTCTTCAATAAACCTTCTGTTACAGAAACATTCGTCGACGTT 60
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 90 ATGGATATTTTCATGGATTTCTTCAATAAACCTTCTGTTACAGAGACATTCGTCGACGTT 149
Query 61 TTGCTATGTGCAGTTCCGATTTGGGTCGCTGTTATGATCGGGCTTTTGATTGGTTGGTCT 120
||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||
Sbjct 150 TTGCTATGTGCAGTTCCGATTTGGGTCACTGTTATGATCGGGCTTCTGATCGGTTGGTCT 209
Query 121 TGGCGTCCAAGATGGACTGGCTTGTTTTATTTAGGGTTCCGTTCGAAGCTTCGGTTTCTA 180
|||||||| ||||||||| ||||| |||||||||| |||||||| |||||||||||||||
Sbjct 210 TGGCGTCCTAGATGGACTAGCTTGGTTTATTTAGGTTTCCGTTCTAAGCTTCGGTTTCTA 269
Query 181 TTG-ACTGCTCCTCCTGGTTTTGGTGCTCGTCGTATTTGGCTTGCTTTCACCGCTCTCTC 239
|| |||| ||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 270 -TGTACTGTTCCTCCTGGATTTGGTGCTCGTCGTATTTGGCTTGCTTTCACCG--CTCTC 326
Query 240 TGTTTTTTCCGTTTGTCGTACTCTTTGGTCAAGACTCGGTTCTACTTCCAAGAGATCGTC 299
| | | | || ||| || | | |||| || ||||| | ||| ||
Sbjct 327 -------T-C-----T-G--CT-TTT--TC-CG--TTTGTTCAACCTCCAATAAATCCTC 364
Query 300 GGTTAATAACGGTTTAGCTCCGTCGTCTAAACCGGTTGAGGAAGAAG--------C-AGT 350
|||||||||||| | | | | ||||||||||| || ||||||| | ||
Sbjct 365 GGTTAATAACGG--T---T-C--C-TCTAAACCGGTCGAAGAAGAAGCATTTTCACGAGC 415
Query 351 TAGTGATAAAATTACAGAGAAAGAGCCAGATGTTGTGACAGAGAAGGATTTAGAGCATTT 410
|||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 416 TAGTGATAAAGTTACAGAGAAAGAGAAAGATGTTGTGACAGAGAAGGATTTAGAGCATTT 475
Query 411 GTTGTATCTCCTTGAAGCTGGAAATGCTAATTTGGAGTGGCAATCTATGATGGATAAGTC 470
|||| |||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||
Sbjct 476 GTTGCATCTGCTTGAAGCTGGAAATGCTAGTTTTGAGTGGCAATCTATGATGGATAAGTC 535
Query 471 TACTCCTAATATGAGTTATCAAGCTTGGCGACATGAGCCTGAGACT-GGTCCTGTTGTTT 529
|||||| |||||||| |||||||||||||| ||||||||||||| | |||||||||||||
Sbjct 536 TACTCCGAATATGAGCTATCAAGCTTGGCGTCATGAGCCTGAGA-TAGGTCCTGTTGTTT 594
Query 530 ATCGTAGTCGAACTGTTTTTGAGGATGCAACACCAGACATTGTTAGGGATTTCTTCTGGG 589
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 595 ATCGTAGTCGAACTGTTTTTGAGGATGTAACACCAGACATTGTTAGGGATTTCTTCTGGG 654
Query 590 ACGATGAGTTTCGACCTAAATGGGATCCTATGCTTGCTTACTTCAAAACCTTGGAGGAAG 649
|||||||||||||||||||||||||| |||||||||||||||||||||| || |||||||
Sbjct 655 ACGATGAGTTTCGACCTAAATGGGATACTATGCTTGCTTACTTCAAAACTTTAGAGGAAG 714
Query 650 ATCCTAAGACAGGAACTACCATTGTTCACTGGATCAAAAAGTTCCCATTTTTCTGTAGTG 709
|||||||||||||||||||||||||||| ||||| |||||||||||||| ||||||||||
Sbjct 715 ATCCTAAGACAGGAACTACCATTGTTCATTGGATTAAAAAGTTCCCATTCTTCTGTAGTG 774
Query 710 ACCGGGAATACATTATTGGCAGGAGAATATGGGAGTCTGGAA-AAAAGTATTATGCTGTG 768
||||||||||||| ||||| |||||||||||||| ||||||| |||| ||||||||||||
Sbjct 775 ACCGGGAATACATCATTGGTAGGAGAATATGGGAATCTGGAAGAAAA-TATTATGCTGTG 833
Query 769 ACAAAGGGAGTACCTTATCAAGCTCTACCAAAGCGTGATAAGCCGAGGCGAGTTGAGCTT 828
|| ||||||||||| ||| ||||| || ||||||||||||||||||||||||| || |||
Sbjct 834 ACTAAGGGAGTACCGTATAAAGCTTTATCAAAGCGTGATAAGCCGAGGCGAGTCGAACTT 893
Query 829 TATTTCTCAAGTTGGATTATTAAAGCAGTTGAATCCAGAAAGAGG-GATGGGC-AGTTAT 886
|||||||||||||||||||| || ||||||||||| ||||| ||| ||||||| | | |
Sbjct 894 TATTTCTCAAGTTGGATTATCAATGCAGTTGAATCAAGAAA-AGGTGATGGGCAAATGA- 951
Query 887 CAGCTTGTGAAGTCTCTCTTGTCCACTACGAAGACATGGGAATCCCAAAAGATGTAGCAA 946
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 952 CAGCTTGTGAAGTCTCTCTTGTTCACTACGAAGACATGGGAATCCCAAAAGATGTAGCAA 1011
Query 947 AGTTAGGAGTCCGTCATGGCATGTGGGGAGCTGTAAAGAAGCTAAACTCTGGTTTGAGGG 1006
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1012 AGTTAGGAGTCCGTCATGGCATGTGGGGAGCTGTAAAGAAGCTAAACTCTGGCTTAAGGG 1071
Query 1007 CATACCAAAGCGCTAGAAAACCTGGGACGTCTCTCTCACGGAGTGCGCAGATGGCAAGTA 1066
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1072 CGTACCAAAGCGCTAGAAAACCTGGGACGTCGCTCTCACGGAGTGCGCAGATGGCAAGTA 1131
Query 1067 TCACCACAAAACTGAACATGGATTTGGTGGAAACATCTGGAGCAGAGGAAGAAGAGAGAG 1126
|||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1132 TCACCACAAAGCTGAACATGGATTTGGTGGAAACATCTGGGGCAGAGGACGAAGAGAGAG 1191
Query 1127 GACGAGCAGTGGAGAATGCGAGGAAACAAAAAGATCAGTTCAGTGTAGATTGGAAATGGA 1186
|||||||||| |||||||||||||||||||| ||||||||| ||||||| ||||||||||
Sbjct 1192 GACGAGCAGTAGAGAATGCGAGGAAACAAAATGATCAGTTCGGTGTAGACTGGAAATGGA 1251
Query 1187 TTGTTGTAGGAGGAGTGGCTTTGGCTTGTGGGCTTCATTCTAGTGCTATAGGCAAGGCGT 1246
| |||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1252 TCGTTGTAGGAGGAGTAGCTTTGGCTTGTGGGCTTCATTCTAGTGCTATAGGTAAGGCGT 1311
Query 1247 TGATGGTTGGAGCTGGGCACAGACTTGCTCGTAGGTGA 1284
| |||||||||||||| || ||||||||||||||||||
Sbjct 1312 TAATGGTTGGAGCTGGACAGAGACTTGCTCGTAGGTGA 1349
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63152285610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5