BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319034
Length=234
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23165.1 | Symbols: LCR42 | low-molecular-weight cysteine-ri... 311 2e-84
> AT3G23165.1 | Symbols: LCR42 | low-molecular-weight cysteine-rich
42 | chr3:8264650-8265060 REVERSE LENGTH=234
Length=234
Score = 311 bits (168), Expect = 2e-84
Identities = 215/237 (91%), Gaps = 6/237 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAACTCTTCTCTCCTATTCGTACTAATTGTCG-TTTTCGTCATTTCTTCTTCAGA 59
||||||||||||||| || | |||||||||||||||| ||||| | |||||||| |||||
Sbjct 1 ATGAAGAACTCTTCTATCATGTTCGTACTAATTGTCGTTTTTC-TTATTTCTTCATCAGA 59
Query 60 GAACCAAAAAATGGTAGGAGAAGCAAAA-AAGTGTAAAGCTGGATGGGCTTGTTCTGGAG 118
|||||||||||||||||||||||||||| || |||||| ||||||||||||||| |||||
Sbjct 60 GAACCAAAAAATGGTAGGAGAAGCAAAACAA-TGTAAAACTGGATGGGCTTGTTTTGGAG 118
Query 119 AAGATATATGCAAAGAAAAATGCATGGCTAAATACAATGGTGTTGGCACTGTTACTTATT 178
||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 119 AAGATGCATGCAAAGAAAAATGCATGGCTAAATACAAAGGTGTTGGAACTGTTACTTATT 178
Query 179 TTTCTTTCCCTCCGGAAACTATTACTATAT-TGTGCGATTGCGTGTATGATTGCTAA 234
|| | ||||||||||||||||||| ||||| | ||||| ||| ||||||||||||||
Sbjct 179 TTCCATTCCCTCCGGAAACTATTATTATATAT-TGCGAATGCTTGTATGATTGCTAA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10556227290
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5