BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319035 Length=228 Score E Sequences producing significant alignments: (Bits) Value AT2G14935.1 | Symbols: LCR40 | low-molecular-weight cysteine-ri... 307 2e-83 AT3G23167.1 | Symbols: LCR39 | low-molecular-weight cysteine-ri... 228 2e-59 > AT2G14935.1 | Symbols: LCR40 | low-molecular-weight cysteine-rich 40 | chr2:6431471-6431826 FORWARD LENGTH=225 Length=225 Score = 307 bits (166), Expect = 2e-83 Identities = 210/230 (91%), Gaps = 7/230 (3%) Strand=Plus/Plus Query 1 ATGAAGAACTCTTCTACAATTTTATTCGTACTAGTTGTCTTTTTCTTCATTTCTTCTTCA 60 ||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||||||| Sbjct 1 ATGAAGAACTCTTCT---ATTATATTGGTACTAGTTTTCTTTTTCTTCATTTCTTCTTCA 57 Query 61 GGAGAAAG-AAAAAAGTGTTTTGATGGATGGACTTGTTTAGGAGAAGACAAATGCAAAGT 119 |||| ||| ||||| ||||| |||||||||||||||| |||||||||||||||||||||| Sbjct 58 GGAG-AAGCAAAAACGTGTTCTGATGGATGGACTTGTGTAGGAGAAGACAAATGCAAAGT 116 Query 120 AAAGTGCATGGCTAAACACAAAGGAGTTGGAACCTGTAACTT-GTATACTATTCCTTCTT 178 ||| ||||||||||||||||||||||||||||| |||| ||| ||||| ||||||||||| Sbjct 117 AAACTGCATGGCTAAACACAAAGGAGTTGGAACATGTA-CTTTGTATATTATTCCTTCTT 175 Query 179 TCCCTGCTCCGGGAGCTTCTTATATTTGCGATTGCAAGTTTGATTGCTAA 228 ||||||||||| | ||||||||||||||||||||| ||||||||||||| Sbjct 176 TCCCTGCTCCGATAACTTCTTATATTTGCGATTGCATGTTTGATTGCTAA 225 > AT3G23167.1 | Symbols: LCR39 | low-molecular-weight cysteine-rich 39 | chr3:8266218-8266585 REVERSE LENGTH=234 Length=234 Score = 228 bits (123), Expect = 2e-59 Identities = 203/239 (85%), Gaps = 16/239 (7%) Strand=Plus/Plus Query 1 ATGAAGAACTCTTCTACAATTTTATTCG-TACTAGTTGTCTTTTTCTTCATTTCTTCTTC 59 ||||||||||||||| ||| |||| | ||||||||||||||||| ||||||||||||| Sbjct 1 ATGAAGAACTCTTCT---ATTCTATT-GCTACTAGTTGTCTTTTTCGTCATTTCTTCTTC 56 Query 60 AGGAGAAAG-AAAAAAGTGTTTTGATGGATGGACTTG--T---T--T--AGGAGAAGACA 109 ||||| ||| ||||| ||||| ||||||||||||||| | | | || |||||||| Sbjct 57 AGGAG-AAGCAAAAACGTGTTCTGATGGATGGACTTGCTTAGGTCCTAAAGAAGAAGACA 115 Query 110 AATGCAAAGTAAAGTGCATGGCTAAACACAAAGGAGTTGGAACCTGTAACTTGTATACTA 169 ||||||||| ||| ||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 116 AATGCAAAGAAAACTGCATGGCTAAACACAAAGGAGTTGGAACCTGTAATTTGTATACTA 175 Query 170 TTCCTTCTTTCCCTGCTCCGGGAGCTTCTTATATTTGCGATTGCAAGTTTGATTGCTAA 228 |||| ||||| |||||| | ||| |||||| || ||||||| ||||||||||||| Sbjct 176 TTCCAGAATTCCCAGCTCCGATAACTTATTATATGTGTGATTGCATGTTTGATTGCTAA 234 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 10254620796 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5