BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319035
Length=228
Score E
Sequences producing significant alignments: (Bits) Value
AT2G14935.1 | Symbols: LCR40 | low-molecular-weight cysteine-ri... 307 2e-83
AT3G23167.1 | Symbols: LCR39 | low-molecular-weight cysteine-ri... 228 2e-59
> AT2G14935.1 | Symbols: LCR40 | low-molecular-weight cysteine-rich
40 | chr2:6431471-6431826 FORWARD LENGTH=225
Length=225
Score = 307 bits (166), Expect = 2e-83
Identities = 210/230 (91%), Gaps = 7/230 (3%)
Strand=Plus/Plus
Query 1 ATGAAGAACTCTTCTACAATTTTATTCGTACTAGTTGTCTTTTTCTTCATTTCTTCTTCA 60
||||||||||||||| ||| |||| ||||||||| |||||||||||||||||||||||
Sbjct 1 ATGAAGAACTCTTCT---ATTATATTGGTACTAGTTTTCTTTTTCTTCATTTCTTCTTCA 57
Query 61 GGAGAAAG-AAAAAAGTGTTTTGATGGATGGACTTGTTTAGGAGAAGACAAATGCAAAGT 119
|||| ||| ||||| ||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 58 GGAG-AAGCAAAAACGTGTTCTGATGGATGGACTTGTGTAGGAGAAGACAAATGCAAAGT 116
Query 120 AAAGTGCATGGCTAAACACAAAGGAGTTGGAACCTGTAACTT-GTATACTATTCCTTCTT 178
||| ||||||||||||||||||||||||||||| |||| ||| ||||| |||||||||||
Sbjct 117 AAACTGCATGGCTAAACACAAAGGAGTTGGAACATGTA-CTTTGTATATTATTCCTTCTT 175
Query 179 TCCCTGCTCCGGGAGCTTCTTATATTTGCGATTGCAAGTTTGATTGCTAA 228
||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 176 TCCCTGCTCCGATAACTTCTTATATTTGCGATTGCATGTTTGATTGCTAA 225
> AT3G23167.1 | Symbols: LCR39 | low-molecular-weight cysteine-rich
39 | chr3:8266218-8266585 REVERSE LENGTH=234
Length=234
Score = 228 bits (123), Expect = 2e-59
Identities = 203/239 (85%), Gaps = 16/239 (7%)
Strand=Plus/Plus
Query 1 ATGAAGAACTCTTCTACAATTTTATTCG-TACTAGTTGTCTTTTTCTTCATTTCTTCTTC 59
||||||||||||||| ||| |||| | ||||||||||||||||| |||||||||||||
Sbjct 1 ATGAAGAACTCTTCT---ATTCTATT-GCTACTAGTTGTCTTTTTCGTCATTTCTTCTTC 56
Query 60 AGGAGAAAG-AAAAAAGTGTTTTGATGGATGGACTTG--T---T--T--AGGAGAAGACA 109
||||| ||| ||||| ||||| ||||||||||||||| | | | || ||||||||
Sbjct 57 AGGAG-AAGCAAAAACGTGTTCTGATGGATGGACTTGCTTAGGTCCTAAAGAAGAAGACA 115
Query 110 AATGCAAAGTAAAGTGCATGGCTAAACACAAAGGAGTTGGAACCTGTAACTTGTATACTA 169
||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 116 AATGCAAAGAAAACTGCATGGCTAAACACAAAGGAGTTGGAACCTGTAATTTGTATACTA 175
Query 170 TTCCTTCTTTCCCTGCTCCGGGAGCTTCTTATATTTGCGATTGCAAGTTTGATTGCTAA 228
|||| ||||| |||||| | ||| |||||| || ||||||| |||||||||||||
Sbjct 176 TTCCAGAATTCCCAGCTCCGATAACTTATTATATGTGTGATTGCATGTTTGATTGCTAA 234
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10254620796
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5