BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319038
Length=654
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23180.1 | Symbols: | HR-like lesion-inducing protein-relat... 1037 0.0
> AT3G23180.1 | Symbols: | HR-like lesion-inducing protein-related
| chr3:8277037-8278396 FORWARD LENGTH=748
Length=748
Score = 1037 bits (561), Expect = 0.0
Identities = 626/657 (95%), Gaps = 6/657 (1%)
Strand=Plus/Plus
Query 1 ATGGATGTTGTGCAAAGAAAAGTGAACAAATTTGGaaaaaaaGTTGCTTCTTTCCCTCAT 60
|||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||
Sbjct 95 ATGGATGTTGTGCAAAGAAAAGTGAAAAAAATTGGAAGAAAAGTTGCTTCTTTCCCTCAT 154
Query 61 GTTGAAACTATTGGAAGATCTCTCTTTGCCTCCTCCTTCTTCCTCTCTGCTTGGCATGAT 120
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 155 GTTGAAACTATTGGAAGAGCTCTCTTTGCCTCCTCCTTCTTCCTCTCTTCTTGGCATGAT 214
Query 121 TATATGGAGCTCAGAGCCAACTGG-ATAGGAACAGAAGATTATTGGAGCCCAAAGTTTGG 179
|| |||||||||| |||||||||| || |||||||| |||||||||||||||||||||||
Sbjct 215 TACATGGAGCTCAAAGCCAACTGGAAT-GGAACAGAGGATTATTGGAGCCCAAAGTTTGG 273
Query 180 CTATTCAGGGGACCAGATTAAGTATCTTATGACAGTTAGTATCATAGTGAGAACTCTTGG 239
||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||||||
Sbjct 274 CTATTCAGGAGACCAGATTAAGCATCTTATGACAGTTAGTATCATTGTGAGAACTCTTGG 333
Query 240 AGGACTTATCTTCATCTATGGCAGCTTC-TCTGGAGCCTTTCTCTTGCTTATGTACCAAG 298
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 334 AGGACTTATCTTCATCTATGGCAGCTTCTTC-GGAGCCTTTCTCTTGCTTATGTACCAAG 392
Query 299 GTATTGCTACAATGATTCATCATGATTTCTACAATCATCATATCGACACTGAAGAATTTG 358
| |||||||||||| |||||||||||||||||||||||| | | || |||||||||||||
Sbjct 393 GCATTGCTACAATGGTTCATCATGATTTCTACAATCATCGTTTAGATACTGAAGAATTTG 452
Query 359 GACTGCTCTATCTCAAACTCAAAAGGATTCTGAACGAAACAGTGTCGTACAATACTGCAT 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GACTGCTCTATCTCAAACTCAAAAGGATTCTGAACGAAACAGTGTCGTACAATACTGCAT 512
Query 419 ACAACT-TCTACAAATCAGACTTTGACGAGCAGCAAATAGAGCAAGTCAAATCAAAATTC 477
|||| | |||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 513 ACAA-TCTCTACAAATCAGACTTTGACGAGCAGCAGATAGAGCAAGTGAAATCAAAATTC 571
Query 478 CGTGAGCTTGCGGATCACGCAATGACAAACCCTGCATTGTTCGGACATAATGAGTTTCTT 537
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 572 CGTGAGCTTGCGGATCACGCGATGACAAACCCTGCATTGTTCGGACATAATGAGTTTCTT 631
Query 538 CGTCGGCTCTTAAGCTTCGTCAAGGGATTGGCCGTAGTAGGAGCATTGCTCTTTTTCTTG 597
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||
Sbjct 632 CGTCGGCTCTTAAGCTTCGTCAAGGGATTGGCCGTAGTAGGAGCATTGCTGTTTTTCGTG 691
Query 598 GATATGAAGCATCGTCTCAACAAAGCCAAGAACCAATCCAAAGTTAAAACTGATTGA 654
||||||||| |||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 692 GATATGAAGTATCGTCTCAACAAAGCCAAGAAGCAATCCAAAGTTAAAAATGATTGA 748
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31597278463
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5