BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319045
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23260.1 | Symbols: | F-box and associated interaction doma... 725 0.0
> AT3G23260.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8313334-8314422 FORWARD LENGTH=1089
Length=1089
Score = 725 bits (392), Expect = 0.0
Identities = 543/613 (89%), Gaps = 22/613 (4%)
Strand=Plus/Plus
Query 1 ATGGAGTGGAGAAGCCTTCCGTTGGAATTGCAAGAAGAGATACTTTCTAGGGTTCCGGCA 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTGGAGAAGCCTTCCGGTGGAATTGCAAGAAGAGATACTTTCTAGGGTTCCGGCT 60
Query 61 AAATCTCTGGCACGATTGCGTTCAACGTCGAAACGATGGAATGCTCTACT-GAAATCTGG 119
|||| | ||||||||||||| ||||| ||||||| |||||| |||||| | |||| ||||
Sbjct 61 AAATATTTGGCACGATTGCGATCAACATCGAAACAATGGAACGCTCTA-TCGAAAACTGG 119
Query 120 GAGCTTTGCTAAGATA-CACTCTGCTAATGCACCAACA-GAGTCTCTGATTATGATTATC 177
||| |||||||||| | ||||||||||||||| ||| | ||| | | | ||||||||
Sbjct 120 GAGTTTTGCTAAGA-AGCACTCTGCTAATGCAACAA-AGGAG-C-C----TCTGATTATC 171
Query 178 ATGTTGAAGGATTCTAGGGTTTACTTAG-AGATTGTCAATCTCCATGGAGTTCACAACAA 236
|||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct 172 ATGTTGAAGGATTCTAGGGTTTACTTAGCA-AGTGTCAATCTCCATGGAGTTCACAACAA 230
Query 237 CGTTGCCCCATCTTTTGAGTTAGGATCTCGATTATACCTTAAAGAGCCGCACATATGTAA 296
|||||| | |||||||||||||||||||||||| ||||||||||| |||||||| | |||
Sbjct 231 CGTTGCTCAATCTTTTGAGTTAGGATCTCGATTGTACCTTAAAGATCCGCACATTTCTAA 290
Query 297 CGTCTTTCACTGTGAAGGCTTATTATTGCTATGCACTATTAAGGAGAATAGACTCGAGGT 356
||||||||||||||| ||||| |||||||| ||| | ||||||||||||| |||||||||
Sbjct 291 CGTCTTTCACTGTGATGGCTTGTTATTGCTCTGCTCCATTAAGGAGAATACACTCGAGGT 350
Query 357 TTGGAATCCATGTTCAGGAGAAACCAAGTTAATTAAACCTAGAAACAGCTACTACAAGGA 416
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 351 TTGGAATCCATGTTCAGGAGAAGCCAAGTTAATTAAACCTAGACACAGCTACTACAAGGA 410
Query 417 ATCAAACTTTTTTGCTCTTGGTTACGCCAACAAATCTTCCGGCAAGAAATACAAAGTCTT 476
|||| |||||| |||||||||||| | ||||||||| ||| |||||||||||||||||||
Sbjct 411 ATCAGACTTTTATGCTCTTGGTTATGACAACAAATCCTCCTGCAAGAAATACAAAGTCTT 470
Query 477 GAGCGTGGATC-GTCGAGACCATGTTCCTGGT-ATCTCCAACAATGAGTACGAAATCTAT 534
||| ||| || ||| || |||||||| ||| | || ||| | ||||||||||||||||
Sbjct 471 GAGGGTG-ATTAGTCAAGTCCATGTTCAAGGTGA-CTTCAAGATTGAGTACGAAATCTAT 528
Query 535 GACTTTACCAATGATTCTTGGAGGGTTCTTGGTGTGACTACC-AA-TAGGATTATAAGAC 592
||||| |||||||||||||||||||||| ||||| ||||||| || | | | |||||||
Sbjct 529 GACTTCACCAATGATTCTTGGAGGGTTCATGGTGCGACTACCGAACT-GTCT-ATAAGAC 586
Query 593 AAAATCATCCCGT 605
|||| ||||||||
Sbjct 587 AAAAGCATCCCGT 599
Score = 435 bits (235), Expect = 5e-121
Identities = 370/433 (85%), Gaps = 18/433 (4%)
Strand=Plus/Plus
Query 606 TTTTGATTTTTCAACAGAGAGATTTCAAAGTCTGTCTCTTCCTCAGCCGTTTCCTTATAT 665
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 666 TTTTGATTTTTCAACCGAGAGATTTCAAAGTCTGTCTCTTCCTCAGCCGTTTCCTTATCT 725
Query 666 AGTTGCGGCTTTATCAGTGGTTAGAGAAGAACAACTCTGTTTGTTAGGTTATTATAATAA 725
||| ||| ||||||||||||||||||||| ||||||||| |||| ||||||||||||
Sbjct 726 GGTTACGGATTTATCAGTGGTTAGAGAAGAGCAACTCTGTCTGTTTGGTTATTATAATT- 784
Query 726 GGA-AACATA-TTCAGAAGACTTAAATTTATGGGTGACATCTAGTATCGGATCAGTCATG 783
|| |||| | |||||||||||||||| ||||||||||| ||||| ||||||||||| ||
Sbjct 785 GGTCAACA-ACTTCAGAAGACTTAAATGTATGGGTGACAACTAGTCTCGGATCAGTCGTG 843
Query 784 TCATGGAGCAAGTTCTTAACAGTGCACACCATTAATCCG-G-GTCGGGAAATATTGTTTG 841
||||||||||||||||||||| | || | |||||| ||| | || || | ||| |||||
Sbjct 844 TCATGGAGCAAGTTCTTAACAATACAAATCATTAAGCCGAGAGT-GG-A--TAT-GTTTG 898
Query 842 CTGATGGTATGAGTTTCTTGGCCGTGGAGCAAACCAAAGT-TTTAGTGTGTTTCAGTAAC 900
| |||| ||||||||||||| || ||||||| |||| | ||||||||||| | | |
Sbjct 899 ATTATGGGATGAGTTTCTTGGTCGACGAGCAAAACAAA-TCTTTAGTGTGTTGGA-TCTC 956
Query 901 C-AAA---TCTTACGTATTGTGGGAGAAAATAATAACATACAACATGTGGATGATCATGA 956
| ||| |||||| ||||||||||||| | || |||||||| || ||||||||||||
Sbjct 957 CCAAAAAGTCTTACACATTGTGGGAGAAATTTATCACATACAAGATTTGGATGATCATGG 1016
Query 957 TAGAGATTCTATGTCAAGATCATCTTGCTCAGTTCTTCTGAAATACGTTCCAAGTTTAGC 1016
|||||||||| || ||||||||| |||||||||||| |||| || ||||||||||||||
Sbjct 1017 TAGAGATTCTGCGTTAAGATCATCATGCTCAGTTCTTATGAATTATGTTCCAAGTTTAGC 1076
Query 1017 CCAAATCCAATAA 1029
|||||||||||||
Sbjct 1077 CCAAATCCAATAA 1089
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5