BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg319056 Length=597 Score E Sequences producing significant alignments: (Bits) Value AT3G23380.1 | Symbols: RIC5 | ROP-interactive CRIB motif-contai... 717 0.0 > AT3G23380.1 | Symbols: RIC5 | ROP-interactive CRIB motif-containing protein 5 | chr3:8373947-8374708 FORWARD LENGTH=582 Length=582 Score = 717 bits (388), Expect = 0.0 Identities = 537/604 (89%), Gaps = 29/604 (5%) Strand=Plus/Plus Query 1 ATGACCTCACCAATGAAGGGTCTATTAAAAGGGTTGAGGTACATTGCTCGTATCTTCGAG 60 ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 1 ATGACCTCACCTATGAAGGGTCTATTAAAAGGTTTGAGGTACATTGCTCGTATCTTCGAG 60 Query 61 GATGAGAAGGAACCAGAGATGCAGATTGGAATACCGACCGATGTAAAACATGTTGCTCAT 120 ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| Sbjct 61 GATGAGAAGGAACCAGAGATGCAGATTGGAATACCAACCGATGTCAAACATGTTGCTCAT 120 Query 121 ATAGGATGGGAAGGGCCCTCTGCTACAACCCCAAGCTGGATGCATGATTTCAAGTCT-CA 179 |||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || | Sbjct 121 ATAGGATGGGAAGGGCCCTCAGCTACCACCCCAAGCTGGATGCATGATTTCAAGCCTACC 180 Query 180 AGATCGTACAAAGACTGAGAC-AAAGGGAAGC-TCTAACAAGAAACCTGGGAGTTCCGGG 237 |||| || ||||||||||| ||||| || | |||||||| |||||||||||||||||| Sbjct 181 -GATCAAACGAAGACTGAGACGAAAGG-AA-CATCTAACAAAAAACCTGGGAGTTCCGGG 237 Query 238 GAGAAGCATAGGAACAAGGGAAGGCGTAAAACATCCACAGGAAACAACTCACC-AGCAGA 296 ||||| |||||||| |||||| ||||||||||| ||||||||||||||||| | |||| Sbjct 238 GAGAAACATAGGAA---GGGAAGACGTAAAACATCAACAGGAAACAACTCACCTA-CAGA 293 Query 297 ATCTCCATCAAGGGTAGGAGGATCAGTGAGGCAATCAAGACGCAGCACGGGCAAACAGAG 356 ||||||||||||||||||||||||||| |||| ||||| ||||| |||||| ||||| || Sbjct 294 ATCTCCATCAAGGGTAGGAGGATCAGTAAGGCCATCAAAACGCAACACGGGGAAACAAAG 353 Query 357 AGAACAGAACACGGGTTCGGGGTCAGAGTCAGGGTCAGGGTTAGAGTTACCTCAACAGAC 416 ||| |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| Sbjct 354 AGAGCAGAACACGGGTTCAGGGTCAGAGTCAGGTTCAGGATTAGAGTTACCTCAACAGAC 413 Query 417 TGAACAGTCTGTTGGACCAAAACACTCAA-GACAGAAAAAA-TCAAAAGGATCAGCAGCa 474 ||| |||| ||||| ||||||||| |||| | || |||||| ||||||||||||||| || Sbjct 414 TGATCAGTTTGTTGTACCAAAACAATCAAAG-CA-AAAAAAGTCAAAAGGATCAGCAACA 471 Query 475 ggaggaggaggaggaggaggagAACCTCCTCCAGCTATTGAAC-ATGTAAAGACGAAAGA 533 |||||||| | | | ||||||||| ||| ||||| || ||| | |||||| Sbjct 472 GGAGGAGGCG-A--A---------CCTCCTCCATCTAATGAACCATC-AAACAAGAAAGA 518 Query 534 AACAGATATATCCGTGAGAGCGGTATACCCTTGTGCGGGTCTTGGAAGTTCTACAGGAAG 593 |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 519 AACAGATATATCTGTGAGAGCGGTTTACCCTTGTGCGGGTCTTGGAAGTTCTACAGGAAG 578 Query 594 ATGA 597 |||| Sbjct 579 ATGA 582 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28733932084 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5