BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319056
Length=597
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23380.1 | Symbols: RIC5 | ROP-interactive CRIB motif-contai... 717 0.0
> AT3G23380.1 | Symbols: RIC5 | ROP-interactive CRIB motif-containing
protein 5 | chr3:8373947-8374708 FORWARD LENGTH=582
Length=582
Score = 717 bits (388), Expect = 0.0
Identities = 537/604 (89%), Gaps = 29/604 (5%)
Strand=Plus/Plus
Query 1 ATGACCTCACCAATGAAGGGTCTATTAAAAGGGTTGAGGTACATTGCTCGTATCTTCGAG 60
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGACCTCACCTATGAAGGGTCTATTAAAAGGTTTGAGGTACATTGCTCGTATCTTCGAG 60
Query 61 GATGAGAAGGAACCAGAGATGCAGATTGGAATACCGACCGATGTAAAACATGTTGCTCAT 120
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 61 GATGAGAAGGAACCAGAGATGCAGATTGGAATACCAACCGATGTCAAACATGTTGCTCAT 120
Query 121 ATAGGATGGGAAGGGCCCTCTGCTACAACCCCAAGCTGGATGCATGATTTCAAGTCT-CA 179
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| || |
Sbjct 121 ATAGGATGGGAAGGGCCCTCAGCTACCACCCCAAGCTGGATGCATGATTTCAAGCCTACC 180
Query 180 AGATCGTACAAAGACTGAGAC-AAAGGGAAGC-TCTAACAAGAAACCTGGGAGTTCCGGG 237
|||| || ||||||||||| ||||| || | |||||||| ||||||||||||||||||
Sbjct 181 -GATCAAACGAAGACTGAGACGAAAGG-AA-CATCTAACAAAAAACCTGGGAGTTCCGGG 237
Query 238 GAGAAGCATAGGAACAAGGGAAGGCGTAAAACATCCACAGGAAACAACTCACC-AGCAGA 296
||||| |||||||| |||||| ||||||||||| ||||||||||||||||| | ||||
Sbjct 238 GAGAAACATAGGAA---GGGAAGACGTAAAACATCAACAGGAAACAACTCACCTA-CAGA 293
Query 297 ATCTCCATCAAGGGTAGGAGGATCAGTGAGGCAATCAAGACGCAGCACGGGCAAACAGAG 356
||||||||||||||||||||||||||| |||| ||||| ||||| |||||| ||||| ||
Sbjct 294 ATCTCCATCAAGGGTAGGAGGATCAGTAAGGCCATCAAAACGCAACACGGGGAAACAAAG 353
Query 357 AGAACAGAACACGGGTTCGGGGTCAGAGTCAGGGTCAGGGTTAGAGTTACCTCAACAGAC 416
||| |||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||
Sbjct 354 AGAGCAGAACACGGGTTCAGGGTCAGAGTCAGGTTCAGGATTAGAGTTACCTCAACAGAC 413
Query 417 TGAACAGTCTGTTGGACCAAAACACTCAA-GACAGAAAAAA-TCAAAAGGATCAGCAGCa 474
||| |||| ||||| ||||||||| |||| | || |||||| ||||||||||||||| ||
Sbjct 414 TGATCAGTTTGTTGTACCAAAACAATCAAAG-CA-AAAAAAGTCAAAAGGATCAGCAACA 471
Query 475 ggaggaggaggaggaggaggagAACCTCCTCCAGCTATTGAAC-ATGTAAAGACGAAAGA 533
|||||||| | | | ||||||||| ||| ||||| || ||| | ||||||
Sbjct 472 GGAGGAGGCG-A--A---------CCTCCTCCATCTAATGAACCATC-AAACAAGAAAGA 518
Query 534 AACAGATATATCCGTGAGAGCGGTATACCCTTGTGCGGGTCTTGGAAGTTCTACAGGAAG 593
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 519 AACAGATATATCTGTGAGAGCGGTTTACCCTTGTGCGGGTCTTGGAAGTTCTACAGGAAG 578
Query 594 ATGA 597
||||
Sbjct 579 ATGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28733932084
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5