BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg319057
Length=852
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23400.1 | Symbols: FIB4 | Plastid-lipid associated protein ... 1266 0.0
> AT3G23400.1 | Symbols: FIB4 | Plastid-lipid associated protein
PAP / fibrillin family protein | chr3:8376444-8378305 REVERSE
LENGTH=1127
Length=1127
Score = 1266 bits (685), Expect = 0.0
Identities = 800/856 (93%), Gaps = 5/856 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGCTTCTTCTACTTTCTCGTCACTACTACCTTCACCACCGGCTCTTCTTTCCGAC 60
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 81 ATGGCGACTTCTTCTACTTTCTCGTCACTACTACCTTCACCACCAGCTCTTCTTTCCGAC 140
Query 61 CACCGCTCTCCTCCTCCATCCATCAGATTCTCTTTTTCCT-CCTTAACTGTTCCAAAATC 119
||||| |||||||| ||||||||||||| ||| |||| || |||||||| |||||||||
Sbjct 141 CACCGTTCTCCTCCACCATCCATCAGATACTCCTTTT-CTCCCTTAACTACTCCAAAATC 199
Query 120 GTCTCGTTTGGGTTTCACTGTACCGGAGAGGAGAAATCTCGCCGCGAATTCGTCTCTCGT 179
||||||||||||||||||||||||||||| |||||| ||||| || ||||||||||||||
Sbjct 200 GTCTCGTTTGGGTTTCACTGTACCGGAGAAGAGAAACCTCGCTGCTAATTCGTCTCTCGT 259
Query 180 TGAGGTATCTATCGGCGGCGACCGCGACCCACCA-C--CATCATCTGGATCGGGTGGAGA 236
||| ||||| || ||||| || | ||||||||| | ||||||||||||| || |||||
Sbjct 260 TGAAGTATCCATTGGCGGAGAAAGTGACCCACCACCATCATCATCTGGATCAGGAGGAGA 319
Query 237 CGACAAGCAAATTGCATTGCTTAAACTCAAATTACTTAGTGTAGTTTCGGGATTAAACAG 296
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 320 CGACAAGCAAATTGCATTACTCAAACTCAAATTACTTAGTGTAGTTTCGGGATTAAACAG 379
Query 297 AGGACTTGTGGCGAGTGTTGATGATTTACAAAGAGCTGAAGTGGCTGCTAAAGAACTTGA 356
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 380 AGGACTTGTGGCGAGTGTTGATGATTTAGAAAGAGCTGAAGTGGCTGCTAAAGAACTTGA 439
Query 357 AACCGCTGGTGGACCGGTTGATTTAACCGATGATCTTGACAAGCTTCAAGGGAAATGGAG 416
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 440 AACTGCTGGGGGACCGGTTGATTTAACCGATGATCTTGATAAGCTTCAAGGGAAATGGAG 499
Query 417 GCTTTTGTATAGCAGCGCGTTCTCGTCTCGGTCTTTAGGTGGTAGCCGTCCTGGTCTACC 476
||| |||||||| || |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 500 GCTGTTGTATAGTAGTGCGTTCTCTTCTCGGTCTTTAGGTGGTAGCCGTCCTGGTCTACC 559
Query 477 TACTGGACGTTTGATTCCTGTAACTCTTGGCCAGGTGTTTCAACGGATTGATGTGTTTAG 536
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 560 TACTGGACGTTTGATCCCTGTTACTCTTGGCCAGGTGTTTCAACGGATTGATGTGTTTAG 619
Query 537 CAAAGATTTCGATAACATAGCAGAGGTGGAATTAGGAGCTCCTTGGCCATTTCCGCCATT 596
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 620 CAAAGATTTTGATAACATAGCAGAGGTGGAATTAGGAGCCCCTTGGCCATTTCCGCCATT 679
Query 597 AGAAGCCACCGCGACACTGGCTCACAAATTTGAACTCTTAGGCACTTGCAAGATCAAAAT 656
||||||||| |||||| |||| ||||| ||||||||||||||||||||||||||||| ||
Sbjct 680 AGAAGCCACTGCGACATTGGCACACAAGTTTGAACTCTTAGGCACTTGCAAGATCAAGAT 739
Query 657 AACATTTGAGAAAACAACTGTGAAGACATCAGGAAACTTATCGCAGATTCCTCCGTTTGA 716
|||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 740 AACATTTGAGAAAACAACTGTGAAGACATCGGGAAACTTGTCGCAGATTCCTCCGTTTGA 799
Query 717 TATCCCAAGGCTTCCCGACAGTTTCCGGCCATCGTCAAACCCTGGAACTGGAGATTTCGA 776
|||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||
Sbjct 800 TATCCCGAGGCTTCCCGACAGTTTCAGACCATCGTCAAACCCTGGAACTGGGGATTTCGA 859
Query 777 AGTCACCTATGTTGATGATAATTTGCGTATAACTCGCGGGGACAGAGGTGAACTTAGGGT 836
||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 860 AGTTACCTATGTTGATGATACCATGCGCATAACTCGCGGGGACAGAGGTGAACTTAGGGT 919
Query 837 ATTCGTCATTGCTTAA 852
||||||||||||||||
Sbjct 920 ATTCGTCATTGCTTAA 935
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41543639569
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5